TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0180b.2
         (57 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP067897                                                               26  1.8
TC9003                                                                 25  2.4
CB828218                                                               25  3.1
BP034289                                                               24  5.3
BP063295                                                               23  9.0

>BP067897 
          Length = 500

 Score = 25.8 bits (55), Expect = 1.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 21  WAAALQGHMMWLQRQDSFKHKFRNL 45
           WAA++QG  +W  +     H+F+ +
Sbjct: 295 WAASIQGSQIWPHQSMHMTHEFKTV 369


>TC9003 
          Length = 613

 Score = 25.4 bits (54), Expect = 2.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 10  KKFWVASFLIAWAAALQ 26
           +KFW+  FL++W  +LQ
Sbjct: 154 RKFWMFIFLLSWTPSLQ 204


>CB828218 
          Length = 502

 Score = 25.0 bits (53), Expect = 3.1
 Identities = 11/34 (32%), Positives = 17/34 (49%)
 Frame = -1

Query: 17  FLIAWAAALQGHMMWLQRQDSFKHKFRNLDDDDR 50
           F + W    +G  M  +R+ + KHKFR   +  R
Sbjct: 466 FFLCWIILKRGSQMKSERKIT*KHKFRKFQNRAR 365


>BP034289 
          Length = 492

 Score = 24.3 bits (51), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 13  WVASFLIAWAAALQGHMMWL 32
           WV S L +WA+ +   M+W+
Sbjct: 312 WVLSLLQSWASTVAVFMIWM 371


>BP063295 
          Length = 537

 Score = 23.5 bits (49), Expect = 9.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 11  KFWVASFLIAWAAALQGHMMW 31
           K W AS  ++W + ++ H +W
Sbjct: 519 KSWHASSALSWXSPMRAH*VW 457


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.133    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,189,570
Number of Sequences: 28460
Number of extensions: 12039
Number of successful extensions: 59
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of query: 57
length of database: 4,897,600
effective HSP length: 33
effective length of query: 24
effective length of database: 3,958,420
effective search space: 95002080
effective search space used: 95002080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)