TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0180a.6
         (731 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB827854                                                              286  1e-77
AV410483                                                              144  4e-35
AV769894                                                              114  4e-26
AV771450                                                               55  3e-12
AV407775                                                               31  0.80
AV409840                                                               30  1.1
BP030800                                                               28  5.2
AV423212                                                               28  5.2
CB828218                                                               28  5.2
BI419332                                                               28  5.2
TC8672 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partia...    28  6.8
BP036577                                                               28  6.8
BP036018                                                               28  6.8
BP030839                                                               28  6.8
BP072579                                                               27  8.9

>CB827854 
          Length = 564

 Score =  286 bits (731), Expect = 1e-77
 Identities = 142/142 (100%), Positives = 142/142 (100%)
 Frame = +2

Query: 590 AILMLWRRHFRKGRSLEAFIVTPPPNRNPVEQLLTLQEAITQFESLIQAGNIVLLKVRAL 649
           AILMLWRRHFRKGRSLEAFIVTPPPNRNPVEQLLTLQEAITQFESLIQAGNIVLLKVRAL
Sbjct: 2   AILMLWRRHFRKGRSLEAFIVTPPPNRNPVEQLLTLQEAITQFESLIQAGNIVLLKVRAL 181

Query: 650 LLALLPQATEKVALLLVFIAAVFAFVPPKYIIFVIFFEYYTREMPCRKESSDRWVRRMRE 709
           LLALLPQATEKVALLLVFIAAVFAFVPPKYIIFVIFFEYYTREMPCRKESSDRWVRRMRE
Sbjct: 182 LLALLPQATEKVALLLVFIAAVFAFVPPKYIIFVIFFEYYTREMPCRKESSDRWVRRMRE 361

Query: 710 WWIRIPAAPVELIKPDECKKRK 731
           WWIRIPAAPVELIKPDECKKRK
Sbjct: 362 WWIRIPAAPVELIKPDECKKRK 427


>AV410483 
          Length = 432

 Score =  144 bits (364), Expect = 4e-35
 Identities = 72/135 (53%), Positives = 93/135 (68%)
 Frame = +2

Query: 301 KPVRYDLGTDLKQVIKPDLTGPLGARLFDKAVMYKSTSVAEPVYFEFPEFKANVRRDYWL 360
           KP +YDL  DL QV+KP+LTGP G RLFDKAV Y S S++EPV  EFPE K + RRDYWL
Sbjct: 2   KPKKYDLSDDLNQVVKPELTGPWGTRLFDKAVFYSSVSLSEPVVLEFPELKGHARRDYWL 181

Query: 361 DISLEILRVHKFIRKYYLKETQKAEVLARAILGIYRYRAVREAFKYFSSHYKTLLSFNLA 420
            I  EIL VHKFI KY ++   + E L +A+LGI R +A+++          +LL F+L 
Sbjct: 182 AIIREILFVHKFISKYRIQGVARDEALWKAVLGILRLQALQDISSAIPIQNDSLLMFSLC 361

Query: 421 EALPRGDMILETLSN 435
           + LP GD+ILETL++
Sbjct: 362 DQLPGGDLILETLAD 406


>AV769894 
          Length = 467

 Score =  114 bits (286), Expect = 4e-26
 Identities = 55/107 (51%), Positives = 75/107 (69%)
 Frame = -1

Query: 625 LQEAITQFESLIQAGNIVLLKVRALLLALLPQATEKVALLLVFIAAVFAFVPPKYIIFVI 684
           +Q A++Q E LIQ GNI+LLK+R LLL++ PQATE +A  L+  A V A +P KY++ ++
Sbjct: 467 VQNAVSQAEQLIQDGNIILLKLRGLLLSIFPQATEMLAFALLSAALVLALLPCKYLVLLV 288

Query: 685 FFEYYTREMPCRKESSDRWVRRMREWWIRIPAAPVELIKPDECKKRK 731
           F   +T   P RK S++RW RR+REWW  IPAAPV L +  E KK+K
Sbjct: 287 FLAVFTMYSPPRKASTERWNRRLREWWFSIPAAPVTLERDKEEKKKK 147


>AV771450 
          Length = 436

 Score = 55.5 bits (132), Expect(2) = 3e-12
 Identities = 29/61 (47%), Positives = 41/61 (66%)
 Frame = +2

Query: 278 WPGRLTLTNYALYFESLGVGVHEKPVRYDLGTDLKQVIKPDLTGPLGARLFDKAVMYKST 337
           WPG+LTLT+ A+YFE+ G+  +++ +R DL  D  QV+K  + GP G+ LFD AV   S 
Sbjct: 32  WPGKLTLTDKAIYFEAAGLLGNKRAMRLDLTHDGLQVVKAKV-GPFGSALFDSAVSISSG 208

Query: 338 S 338
           S
Sbjct: 209 S 211



 Score = 33.1 bits (74), Expect(2) = 3e-12
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = +3

Query: 346 EFPEFKANVRRDYWLDISLEILRVHKFIRKY 376
           EF +    +RRD W  +  E++ +HKFIR+Y
Sbjct: 234 EFIDLGGEMRRDVWHALISEVISLHKFIREY 326


>AV407775 
          Length = 426

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 13/29 (44%), Positives = 19/29 (64%), Gaps = 1/29 (3%)
 Frame = +3

Query: 345 FEFPEFKANVRRDYWLDISLEILR-VHKF 372
           F FP F    R   WL++S+E+LR +H+F
Sbjct: 69  FRFPRFHFQTRASSWLNLSIELLRHLHEF 155


>AV409840 
          Length = 417

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/38 (36%), Positives = 20/38 (51%)
 Frame = +3

Query: 123 DKDFRRLTYDMMLAWETPSVHTDETPPPSSKDEHGGDD 160
           D+   RL   +  +   P  HTD++PPPSS  +   DD
Sbjct: 201 DESMNRLNLLLKDSKPPPRDHTDDSPPPSSSGDKVSDD 314


>BP030800 
          Length = 516

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -3

Query: 87  ELPLGVKELLTYARNLLEFCSYKALHKLSKSSDYLADKDFRRLTYDMMLAWETPSVH 143
           ++ LG+   L Y   L E CS   +HK  KS++ L D D      D  LA   P  +
Sbjct: 256 KIALGIARALEY---LHEVCSPSVVHKNIKSANILLDADINPHLSDSGLASYIPGAN 95


>AV423212 
          Length = 459

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/51 (27%), Positives = 24/51 (46%)
 Frame = +3

Query: 560 YKSTAFLLLTSYMILRGWIHYLLPSIFVVVAILMLWRRHFRKGRSLEAFIV 610
           +K   + LLT+ MI+  W H  L ++   +  L  W +   K     AF++
Sbjct: 96  FKIIKYFLLTAMMIVERWDHTFLATVSKSMLTLRRWLKKMMKKVPQAAFLL 248


>CB828218 
          Length = 502

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 692 EMPCRKESSDRWVRRMREW--WIRIPAAPVELIK 723
           +M  R+ S  RW   + +W  WI +P+   E++K
Sbjct: 359 KMKMRRSSRQRWSPEVNQWWEWILLPSIRTEVVK 258


>BI419332 
          Length = 471

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 22/77 (28%), Positives = 38/77 (48%), Gaps = 4/77 (5%)
 Frame = +2

Query: 48  AVNSPKPI--PLLSPLANSVVVRSSKILGISTE--ELQHAFDSELPLGVKELLTYARNLL 103
           A NSP  +  PL+  L N++ ++    + +S++  + QH ++       KELL   R L 
Sbjct: 56  ASNSPTDMANPLVLHLTNNLRLQQPMQIYLSSQVQKPQHRWEGRPLFNPKELLCPKRRLR 235

Query: 104 EFCSYKALHKLSKSSDY 120
           +FC   A + +    DY
Sbjct: 236 QFCWAAASN*VCSREDY 286


>TC8672 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (26%)
          Length = 665

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
 Frame = +2

Query: 655 PQATEKVALLLVFIAAVF--AFVPPKYIIFVIFFEYYTREMPCRKESSDRW 703
           P +T  V LLL+ +  +F   F    +   + FF Y     PC + SS +W
Sbjct: 20  PLSTTTVLLLLLLLCTLF*TLFF---HFFSLTFFNYPCLSQPCLRSSSSQW 163


>BP036577 
          Length = 561

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/60 (31%), Positives = 27/60 (44%)
 Frame = +2

Query: 575 RGWIHYLLPSIFVVVAILMLWRRHFRKGRSLEAFIVTPPPNRNPVEQLLTLQEAITQFES 634
           RG +    P I ++V I +  RR   + RS + F+  PP  R+P   L T     T   S
Sbjct: 227 RGDLRLTSPHILLLVTITITRRR---RRRSKQRFLAPPPLYRSPPVNLTTTTTTTTHQSS 397


>BP036018 
          Length = 488

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 23/52 (43%)
 Frame = +1

Query: 395 YRYRAVREAFKYFSSHYKTLLSFNLAEALPRGDMILETLSNSLTNLTVASSK 446
           +R    R    YF S   +L    L   LPRG  +   LSN L N  ++ ++
Sbjct: 322 HRLARNRAKLGYFGSQPTSLRVLELFNLLPRGPSVTVNLSNFLLNFPLSLTR 477


>BP030839 
          Length = 379

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +3

Query: 569 TSYMILRGWIHYLLPSIFVVVAI-----LMLWRRHFRK 601
           T+ +IL   +HY  P I +VVA      ++L RRH R+
Sbjct: 192 TTLLILHPQLHYRAPPIIIVVATAA*FRIILRRRHCRR 305


>BP072579 
          Length = 430

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 591 ILMLWRRHFRKGRSLEAFIVTPPPNRNP 618
           IL   R H R+ +SL+ + V P P RNP
Sbjct: 170 ILFRRRHHHRRLKSLKLWAVRPSPLRNP 253


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,626,706
Number of Sequences: 28460
Number of extensions: 157681
Number of successful extensions: 968
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of query: 731
length of database: 4,897,600
effective HSP length: 97
effective length of query: 634
effective length of database: 2,136,980
effective search space: 1354845320
effective search space used: 1354845320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)