TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0178.14
         (599 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                               161  2e-40
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...    98  3e-21
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {...    28  5.6
TC10429 similar to UP|Q9ZR46 (Q9ZR46) P69C protein, partial (52%)      28  5.6
CB827304                                                               27  7.3
TC9125 similar to UP|Q40316 (Q40316) Vestitone reductase, complete     27  9.5

>TC18710 
          Length = 843

 Score =  161 bits (408), Expect = 2e-40
 Identities = 81/152 (53%), Positives = 103/152 (67%)
 Frame = +2

Query: 439 GPDGLNGLFYKNHWDTVHEVFCEAARSFFSTGHLPSKINETVVTLIPKVPNPESITHYRP 498
           G DG+NGLFY+ + D V +    A  +F     +P++INET+VTLIPKVP+PESI  +RP
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367

Query: 499 ISCCNFTYKVISRIIVTRLKGGLNQLITLNQSAFIGVKMIQDNIMIAQEAFHNILRKGRA 558
           IS C F YKVIS+I V RLK  +  LI+  QS FI  + IQDN++I QEAFH I R G  
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGAL 547

Query: 559 SKEHVALKLDMSKAYERVEWSFLEKNPPCFRF 590
            + H  +KLDM+KAY+RVEW FLE +   F F
Sbjct: 548 GRNHSIIKLDMNKAYDRVEWKFLESSLLAFGF 643


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score = 98.2 bits (243), Expect = 3e-21
 Identities = 48/91 (52%), Positives = 63/91 (68%)
 Frame = -3

Query: 436 KFEGPDGLNGLFYKNHWDTVHEVFCEAARSFFSTGHLPSKINETVVTLIPKVPNPESITH 495
           K  G DG+NGLFY+ + + V      A   FF  G LP ++NET+VTLIPK+P+ E+I  
Sbjct: 281 KAPGMDGINGLFYQQNREIVKNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQ 102

Query: 496 YRPISCCNFTYKVISRIIVTRLKGGLNQLIT 526
           +RPISCC+F YKVIS+IIV RLK  +  LI+
Sbjct: 101 FRPISCCSFIYKVISKIIVARLKPDMVNLIS 9


>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
           thaliana;}, partial (87%)
          Length = 1385

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 10/21 (47%), Positives = 11/21 (51%)
 Frame = +2

Query: 90  YASCGPGKWSWKW*MSARTYY 110
           Y  C  G W W W*  + TYY
Sbjct: 641 YRICSDGVWKWXW***SATYY 703


>TC10429 similar to UP|Q9ZR46 (Q9ZR46) P69C protein, partial (52%)
          Length = 1742

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 6/44 (13%)
 Frame = -2

Query: 466 FFSTGHLPSKINETVVTLIPK------VPNPESITHYRPISCCN 503
           F   G +P+ +NE    +IP+       P P+  + + P+SCCN
Sbjct: 553 FGGGGGIPTSLNEG*PGVIPESSTPMITPFPKLDSFHTPVSCCN 422


>CB827304 
          Length = 506

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 14/29 (48%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
 Frame = -2

Query: 487 VPNPESITH-YRPISCCNFTYKVISRIIV 514
           + NP S  + YR ++ CN  YKVIS I V
Sbjct: 163 IDNPTSSRYCYRYVNPCNHIYKVISHITV 77


>TC9125 similar to UP|Q40316 (Q40316) Vestitone reductase, complete
          Length = 1200

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 456 HEVFCEAARSFFSTG---HLPSKINETVVTLIPKV 487
           H + C+  R+        HLP ++N T VTLI ++
Sbjct: 569 HSLLCQCLRNCIGPAKRFHLPKQVNITPVTLIQRI 465


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.350    0.155    0.548 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,935,280
Number of Sequences: 28460
Number of extensions: 156265
Number of successful extensions: 1457
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of query: 599
length of database: 4,897,600
effective HSP length: 95
effective length of query: 504
effective length of database: 2,193,900
effective search space: 1105725600
effective search space used: 1105725600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 58 (26.9 bits)