TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0177.9
         (113 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15312 UP|RPOD_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'...   210  3e-56
BP065711                                                               23  0.81
AV778756                                                               24  4.1
TC20070 similar to PIR|JQ1073|JQ1073 tryptophan synthase  beta-2...    24  4.1
TC12936 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, pa...    24  4.1
TC10389 homologue to UP|Q39821 (Q39821) SDL12A, partial (37%)          23  5.4
TC14305 homologue to UP|Q84VT6 (Q84VT6) Carbonic anhydrase  , co...    23  7.0
TC13264 UP|Q9SWS9 (Q9SWS9) Ribosomal protein S26, partial (93%)        23  9.2

>TC15312 UP|RPOD_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain
            (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
            (RNA polymerase beta'' subunit) , partial (84%)
          Length = 3522

 Score =  210 bits (534), Expect = 3e-56
 Identities = 110/113 (97%), Positives = 112/113 (98%)
 Frame = +3

Query: 1    AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
            AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 2895 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 3074

Query: 61   QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
            QRTGRALEESICYRT+LLGITKTS+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 3075 QRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRID 3233


>BP065711 
          Length = 524

 Score = 23.5 bits (49), Expect(2) = 0.81
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 2   QSRISLVNKIQRVYRSQGVH 21
           ++ ISLVNKIQR   + G H
Sbjct: 123 ENLISLVNKIQRACTALGDH 182



 Score = 21.2 bits (43), Expect(2) = 0.81
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 57  LLRAQRTGRALEESICYRTILLGIT 81
           LL      RALE   C+R +L  I+
Sbjct: 226 LLSPSSVARALESPRCWRALLAKIS 300


>AV778756 
          Length = 513

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 9  NKIQRVYRSQGVHIHNRH 26
          NK Q ++ +QGV +HN H
Sbjct: 41 NKKQALFGAQGVGVHNWH 94


>TC20070 similar to PIR|JQ1073|JQ1073 tryptophan synthase  beta-2 chain
           precursor -                Arabidopsis thaliana
           {Arabidopsis thaliana;}  , partial (14%)
          Length = 453

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 33  QITSKVLVSEDGMSNVFSLGELI 55
           Q++ K+L+S +GM     LGE +
Sbjct: 389 QLSLKILISSEGMKRRVKLGESV 321


>TC12936 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, partial (48%)
          Length = 491

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 52  GELIGLLRAQRTGR 65
           G+ +GL+ AQRTGR
Sbjct: 292 GQKVGLIAAQRTGR 333


>TC10389 homologue to UP|Q39821 (Q39821) SDL12A, partial (37%)
          Length = 1008

 Score = 23.5 bits (49), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 2   QSRISLVNKIQRVYRSQGVH 21
           ++ ISLVNKIQR   + G H
Sbjct: 91  ENLISLVNKIQRACTALGDH 150


>TC14305 homologue to UP|Q84VT6 (Q84VT6) Carbonic anhydrase  , complete
          Length = 1083

 Score = 23.1 bits (48), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = -3

Query: 34  ITSKVLVSEDGMSNVFSL 51
           ITS + VS D +S+ FSL
Sbjct: 190 ITSSIFVSADSLSSSFSL 137


>TC13264 UP|Q9SWS9 (Q9SWS9) Ribosomal protein S26, partial (93%)
          Length = 691

 Score = 22.7 bits (47), Expect = 9.2
 Identities = 6/14 (42%), Positives = 12/14 (84%)
 Frame = -3

Query: 11  IQRVYRSQGVHIHN 24
           I ++YR++G+ +HN
Sbjct: 551 ILKIYRAKGIQVHN 510


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.134    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,300,013
Number of Sequences: 28460
Number of extensions: 11285
Number of successful extensions: 63
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of query: 113
length of database: 4,897,600
effective HSP length: 89
effective length of query: 24
effective length of database: 2,364,660
effective search space: 56751840
effective search space used: 56751840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)