TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0176a.2
         (342 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17901 weakly similar to UP|Q94EI5 (Q94EI5) AT5g62130/mtg10_150...   434  e-123
TC17004 similar to GB|AAM70808.1|21645108|AE003790 CG3271-PA {Dr...   192  5e-50
BG662120                                                              124  2e-29
AV772011                                                               39  0.002
TC13865 similar to UP|V714_ARATH (Q9FMR5) Vesicle-associated mem...    31  0.26
TC9952                                                                 29  1.0
AV772956                                                               29  1.3
TC16081 similar to UP|Q9XGQ5 (Q9XGQ5) ESTs AU064813(E40579), par...    28  2.9
TC13422                                                                27  3.8
TC19370 homologue to UP|CC21_MEDSA (P24923) Cell division contro...    27  5.0
TC9923 homologue to UP|Q7XHJ0 (Q7XHJ0) Formate dehydrogenase, pa...    27  6.5
BP033690                                                               27  6.5
TC16925 weakly similar to UP|O22208 (O22208) bZIP family transcr...    26  8.5
BP054410                                                               26  8.5
CB827157                                                               26  8.5

>TC17901 weakly similar to UP|Q94EI5 (Q94EI5) AT5g62130/mtg10_150, partial
           (52%)
          Length = 763

 Score =  434 bits (1117), Expect = e-123
 Identities = 198/198 (100%), Positives = 198/198 (100%)
 Frame = +2

Query: 1   MIGGYVFAFLLVLSWSVEVIDASAGDVDPRYRDCIRQCQETGCVAQSCFPHCKFPSDGEH 60
           MIGGYVFAFLLVLSWSVEVIDASAGDVDPRYRDCIRQCQETGCVAQSCFPHCKFPSDGEH
Sbjct: 170 MIGGYVFAFLLVLSWSVEVIDASAGDVDPRYRDCIRQCQETGCVAQSCFPHCKFPSDGEH 349

Query: 61  FDRPWYMQEPLYLQWKKWDCQNDCRYHCMLDREKERKLLNLVPVKYHGKWPFARIYGMQE 120
           FDRPWYMQEPLYLQWKKWDCQNDCRYHCMLDREKERKLLNLVPVKYHGKWPFARIYGMQE
Sbjct: 350 FDRPWYMQEPLYLQWKKWDCQNDCRYHCMLDREKERKLLNLVPVKYHGKWPFARIYGMQE 529

Query: 121 AASVAFSALNLAMHFHGWVSFFILLYYKLPLKDGKEAYYEYAGLWHIYGLLSLNSWFWSA 180
           AASVAFSALNLAMHFHGWVSFFILLYYKLPLKDGKEAYYEYAGLWHIYGLLSLNSWFWSA
Sbjct: 530 AASVAFSALNLAMHFHGWVSFFILLYYKLPLKDGKEAYYEYAGLWHIYGLLSLNSWFWSA 709

Query: 181 VFHSRDVDLTETLDYSSA 198
           VFHSRDVDLTETLDYSSA
Sbjct: 710 VFHSRDVDLTETLDYSSA 763


>TC17004 similar to GB|AAM70808.1|21645108|AE003790 CG3271-PA {Drosophila
           melanogaster;} , partial (9%)
          Length = 543

 Score =  192 bits (489), Expect = 5e-50
 Identities = 90/90 (100%), Positives = 90/90 (100%)
 Frame = +3

Query: 253 VCVVMAVVQLVIWAVWAGLSGHPSRWKLWLVVIAGGLAMLLEIYDFPPYEGLLDAHALWH 312
           VCVVMAVVQLVIWAVWAGLSGHPSRWKLWLVVIAGGLAMLLEIYDFPPYEGLLDAHALWH
Sbjct: 3   VCVVMAVVQLVIWAVWAGLSGHPSRWKLWLVVIAGGLAMLLEIYDFPPYEGLLDAHALWH 182

Query: 313 ATTIPLTYIWWSFIRDDAEFRTSIRVKKAK 342
           ATTIPLTYIWWSFIRDDAEFRTSIRVKKAK
Sbjct: 183 ATTIPLTYIWWSFIRDDAEFRTSIRVKKAK 272


>BG662120 
          Length = 458

 Score =  124 bits (311), Expect = 2e-29
 Identities = 51/77 (66%), Positives = 64/77 (82%)
 Frame = +1

Query: 266 AVWAGLSGHPSRWKLWLVVIAGGLAMLLEIYDFPPYEGLLDAHALWHATTIPLTYIWWSF 325
           A+WAG+S HP+RWKLW VV+   LAM++E YDFPPY G +DAHA+W+A  IPLT++WWS+
Sbjct: 16  AIWAGVSSHPARWKLWTVVVGQALAMVMETYDFPPYMGYVDAHAVWNACCIPLTFLWWSY 195

Query: 326 IRDDAEFRTSIRVKKAK 342
           IRDDAEFRTS  +KK K
Sbjct: 196 IRDDAEFRTSALLKKVK 246


>AV772011 
          Length = 447

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = -3

Query: 186 DVDLTETLDYSSAVILLGYSLILAIL 211
           DVD+ E LDYSSAV+ +GYSL L+IL
Sbjct: 295 DVDVAEKLDYSSAVVPVGYSLTLSIL 218


>TC13865 similar to UP|V714_ARATH (Q9FMR5) Vesicle-associated membrane
           protein 714 (AtVAMP714), partial (34%)
          Length = 543

 Score = 31.2 bits (69), Expect = 0.26
 Identities = 11/26 (42%), Positives = 18/26 (68%)
 Frame = +2

Query: 136 HGWVSFFILLYYKLPLKDGKEAYYEY 161
           H +++ F +LYYK  L+ GK  +Y+Y
Sbjct: 377 HVFIALFFILYYKSTLEPGKVLFYDY 454


>TC9952 
          Length = 630

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 230 IAFVITHVMYINFYKLDYGWNMIVCVVMAVV 260
           + F+ITH  +I F+ L + W+   CV++ ++
Sbjct: 457 LEFIITHSSFITFFSLFFCWSDHGCVIIPIL 549


>AV772956 
          Length = 315

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 232 FVITHVMYINFYKLDYGWNMIVCV 255
           FVI +VMYI F+ L   WN  VC+
Sbjct: 158 FVIVYVMYILFFLLFLDWNGGVCL 87


>TC16081 similar to UP|Q9XGQ5 (Q9XGQ5) ESTs AU064813(E40579), partial (37%)
          Length = 1189

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 14/49 (28%)
 Frame = +3

Query: 176 WFWSAVFHSRDV--------------DLTETLDYSSAVILLGYSLILAI 210
           W+W A F S  V              DL       SAV+ LGYSL++A+
Sbjct: 501 WWWKAFFASGSVALYVFLYSVNYLVFDLQSLSGPVSAVLYLGYSLLMAV 647


>TC13422 
          Length = 490

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 164 LWHIYGLLSLNSWFWSAVFH 183
           LWH +G + +N WF  A+++
Sbjct: 248 LWHTFGSIFVNEWFDRAIYN 307


>TC19370 homologue to UP|CC21_MEDSA (P24923) Cell division control protein 2
           homolog 1  (Fragment) , partial (34%)
          Length = 537

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +3

Query: 272 SGHPSRWKLWLVVIAGGLAMLLEIYDF---PPYEGLLDAHALWHATT 315
           SGHP  W LW  ++   L ++  +  F   PP E L    ALW   T
Sbjct: 144 SGHPRTWHLWFQILI-QLVLIFFLVCFAWIPPKESL--PGALWSMNT 275


>TC9923 homologue to UP|Q7XHJ0 (Q7XHJ0) Formate dehydrogenase, partial
          (56%)
          Length = 755

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 3/36 (8%)
 Frame = +2

Query: 48 CFPHCKFPSDGEHFDRPWYMQ---EPLYLQWKKWDC 80
          CF  C FPS   +  +P++     EP  L WK+ DC
Sbjct: 59 CFLCCSFPSHCSN-TKPFFFHFL*EPSCLWWKEEDC 163


>BP033690 
          Length = 546

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 11/36 (30%), Positives = 17/36 (46%)
 Frame = +1

Query: 19  VIDASAGDVDPRYRDCIRQCQETGCVAQSCFPHCKF 54
           V+  ++  V+ R RD + QC          +PHC F
Sbjct: 337 VV*GASWSVEYRSRDAVFQCGSQSSQFSYAYPHCSF 444


>TC16925 weakly similar to UP|O22208 (O22208) bZIP family transcription
           factor, partial (19%)
          Length = 642

 Score = 26.2 bits (56), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 54  FPSDGEHFDRPWYMQEPL 71
           FPS  E F+ PW+ Q PL
Sbjct: 352 FPSWPEQFEMPWFSQWPL 299


>BP054410 
          Length = 572

 Score = 26.2 bits (56), Expect = 8.5
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 173 LNSWFWSAVFHSRDVDLTETLDYSSAVILLGYSLIL 208
           ++S+F+  +FH     LTET + ++  +L+ Y+L+L
Sbjct: 267 VSSYFYMELFHGCINHLTETSEGATDKLLVQYNLLL 374


>CB827157 
          Length = 536

 Score = 26.2 bits (56), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = +1

Query: 242 FYKLDYGWNMIVCVVMAVVQLVIWAVWAGL 271
           FY L+  W  I+ V   + +L  W +W GL
Sbjct: 151 FYLLNQQWRQILRVPRRLGKLRGWVIWLGL 240


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.142    0.485 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,310,619
Number of Sequences: 28460
Number of extensions: 148779
Number of successful extensions: 976
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of query: 342
length of database: 4,897,600
effective HSP length: 91
effective length of query: 251
effective length of database: 2,307,740
effective search space: 579242740
effective search space used: 579242740
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)