BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0176a.15
(629 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP067249 247 4e-66
BP040784 237 4e-63
TC12060 similar to UP|Q9FKE6 (Q9FKE6) Similarity to cyclin, part... 185 2e-47
TC13006 144 3e-35
BP034132 140 5e-34
AW720223 77 1e-14
BP035364 36 0.021
BP053211 35 0.028
TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding l... 32 0.24
TC9142 similar to UP|Q8S3U2 (Q8S3U2) EDS1-like protein, partial ... 32 0.40
TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting pr... 31 0.69
TC17597 similar to UP|AZF1_YEAST (P41696) Asparagine-rich zinc f... 30 1.2
TC8053 similar to UP|Q94A20 (Q94A20) AT4g15470/dl3775w, partial ... 30 1.2
AW428918 30 1.5
TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, part... 28 3.4
BP034655 28 3.4
TC8309 UP|O22306 (O22306) Nlj21, complete 28 4.4
TC12406 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, p... 28 4.4
CB829198 28 4.4
TC14620 28 5.8
>BP067249
Length = 514
Score = 247 bits (631), Expect = 4e-66
Identities = 120/120 (100%), Positives = 120/120 (100%)
Frame = +3
Query: 1 MAGLLLGDTSHDGTHQSGSQGCSQENGSRWYLSRKEIEENSPSKQDGVDLKKEAYLRKSY 60
MAGLLLGDTSHDGTHQSGSQGCSQENGSRWYLSRKEIEENSPSKQDGVDLKKEAYLRKSY
Sbjct: 153 MAGLLLGDTSHDGTHQSGSQGCSQENGSRWYLSRKEIEENSPSKQDGVDLKKEAYLRKSY 332
Query: 61 CTYLQDLGMRLKVPQVTIASAIIFCHRFFLRQSHAKNDRRIIATSCMFLAGKVEETPRPL 120
CTYLQDLGMRLKVPQVTIASAIIFCHRFFLRQSHAKNDRRIIATSCMFLAGKVEETPRPL
Sbjct: 333 CTYLQDLGMRLKVPQVTIASAIIFCHRFFLRQSHAKNDRRIIATSCMFLAGKVEETPRPL 512
>BP040784
Length = 521
Score = 237 bits (605), Expect = 4e-63
Identities = 114/114 (100%), Positives = 114/114 (100%)
Frame = -1
Query: 516 VDRSAFENMQQGKHQDHSEEHLHLVKPSHETDLSAVEEGEVSALDDIDLGRKSSNHKRKA 575
VDRSAFENMQQGKHQDHSEEHLHLVKPSHETDLSAVEEGEVSALDDIDLGRKSSNHKRKA
Sbjct: 521 VDRSAFENMQQGKHQDHSEEHLHLVKPSHETDLSAVEEGEVSALDDIDLGRKSSNHKRKA 342
Query: 576 ESSPDKFAEGKKRHNYSFGSTHHNRIDYIEDQNNVNLLGHAERDSKRPVQENHI 629
ESSPDKFAEGKKRHNYSFGSTHHNRIDYIEDQNNVNLLGHAERDSKRPVQENHI
Sbjct: 341 ESSPDKFAEGKKRHNYSFGSTHHNRIDYIEDQNNVNLLGHAERDSKRPVQENHI 180
>TC12060 similar to UP|Q9FKE6 (Q9FKE6) Similarity to cyclin, partial (13%)
Length = 554
Score = 185 bits (470), Expect = 2e-47
Identities = 92/104 (88%), Positives = 97/104 (92%), Gaps = 3/104 (2%)
Frame = -3
Query: 1 MAGLLLGDTSHDGTHQSGSQGCSQEN---GSRWYLSRKEIEENSPSKQDGVDLKKEAYLR 57
MAGLLLGD SH G++QSGSQG SQ+N GSRWY SRKEIEENSPSKQDGVDLKKEAYLR
Sbjct: 312 MAGLLLGDISHHGSYQSGSQGGSQDNQEYGSRWYFSRKEIEENSPSKQDGVDLKKEAYLR 133
Query: 58 KSYCTYLQDLGMRLKVPQVTIASAIIFCHRFFLRQSHAKNDRRI 101
KSYCT+LQDLGMRLKVPQVTIA+AIIFCHRFFLRQSHAKNDRRI
Sbjct: 132 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRI 1
>TC13006
Length = 497
Score = 144 bits (364), Expect = 3e-35
Identities = 70/85 (82%), Positives = 73/85 (85%)
Frame = +3
Query: 545 ETDLSAVEEGEVSALDDIDLGRKSSNHKRKAESSPDKFAEGKKRHNYSFGSTHHNRIDYI 604
E DLSAVEEGEVSALDDIDLG KSSN KRK ESSPD F EGKKRHNY GSTHHNRIDYI
Sbjct: 3 EADLSAVEEGEVSALDDIDLGPKSSNQKRKVESSPDNFVEGKKRHNYGSGSTHHNRIDYI 182
Query: 605 EDQNNVNLLGHAERDSKRPVQENHI 629
ED+N VN LGHAERDSKR +QEN +
Sbjct: 183 EDRNKVNRLGHAERDSKRHIQENPV 257
>BP034132
Length = 499
Score = 140 bits (354), Expect = 5e-34
Identities = 69/96 (71%), Positives = 79/96 (81%)
Frame = +2
Query: 1 MAGLLLGDTSHDGTHQSGSQGCSQENGSRWYLSRKEIEENSPSKQDGVDLKKEAYLRKSY 60
MA L+ G+ SH G S +E RWY+SRKEIEE+SPS++DG+DLKKE YLRKSY
Sbjct: 224 MAALVAGELSHHGV----SDDKQEEALGRWYMSRKEIEEHSPSRKDGIDLKKETYLRKSY 391
Query: 61 CTYLQDLGMRLKVPQVTIASAIIFCHRFFLRQSHAK 96
CT+LQDLGMRLKVPQVTIA+AIIFCHRFFLRQSHAK
Sbjct: 392 CTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAK 499
>AW720223
Length = 588
Score = 76.6 bits (187), Expect = 1e-14
Identities = 40/127 (31%), Positives = 78/127 (60%), Gaps = 2/127 (1%)
Frame = +3
Query: 30 WYLSRKEIEENSPSKQDGVDLKKEAYLRKSYCTYLQDLGMRLKVPQVTIASAIIFCHRFF 89
+YL+ +++ NSPS++DG+D E LR C +Q+ G+ L++PQ +A+ + HRF+
Sbjct: 195 FYLTDEQLT-NSPSRKDGIDETTETTLRIYGCDLIQESGILLRLPQAVMATGQVLFHRFY 371
Query: 90 LRQSHAKNDRRIIATSCMFLAGKVEETPRPLKDVILVSYEIIHKKD--PAAVQRIKQKEV 147
++S A+ + + +A SC++LA K+EE P+ + VI+V + + +++ P + K+
Sbjct: 372 CKKSFARFNVKKVAASCVWLASKLEENPKKARQVIIVFHRMECRRENLPMEYLDLXSKKY 551
Query: 148 YEQQKEL 154
+ + EL
Sbjct: 552 VDLKMEL 572
>BP035364
Length = 556
Score = 35.8 bits (81), Expect = 0.021
Identities = 25/85 (29%), Positives = 33/85 (38%)
Frame = +3
Query: 514 KPVDRSAFENMQQGKHQDHSEEHLHLVKPSHETDLSAVEEGEVSALDDIDLGRKSSNHKR 573
K S F + Q +HQ + HL P S E G V + D G + +H
Sbjct: 87 KARSHSQFHHHHQHQHQHQHQHQHHLS*PKPSGHFSPSEHGSVDHGNHRDDGSQCHDHSS 266
Query: 574 KAESSPDKFAEGKKRHNYSFGSTHH 598
+ S G+ RH YSF S H
Sbjct: 267 EIHS-------GENRHGYSFFSFSH 320
>BP053211
Length = 448
Score = 35.4 bits (80), Expect = 0.028
Identities = 26/69 (37%), Positives = 36/69 (51%)
Frame = -3
Query: 552 EEGEVSALDDIDLGRKSSNHKRKAESSPDKFAEGKKRHNYSFGSTHHNRIDYIEDQNNVN 611
EEGE+ ID N KRK ES P + E KKR GS++ N D+ E+ N
Sbjct: 431 EEGEM-----IDDASSFLNRKRKIESPPSREPEMKKR----LGSSYQN--DHAEEGNGEA 285
Query: 612 LLGHAERDS 620
+G+A+ D+
Sbjct: 284 RVGYADGDA 258
>TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding
like-protein, partial (16%)
Length = 779
Score = 32.3 bits (72), Expect = 0.24
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 563 DLGRKSSNHKRKAESSPDKFAEGKKRHNYSFG----STHHNRIDYIEDQNNVNLLGHAER 618
D R HKR+ SS DK++ +H S S+HH++ D D+ + +
Sbjct: 131 DRDRDGRKHKRRHSSSKDKYSYRGAKHGISDDEHQHSSHHHKYDSSSDEKHRSSRRRQRE 310
Query: 619 DSKRPVQENH 628
DS + H
Sbjct: 311 DSMSDHEHKH 340
Score = 31.6 bits (70), Expect = 0.40
Identities = 35/191 (18%), Positives = 74/191 (38%), Gaps = 5/191 (2%)
Frame = +2
Query: 350 AKGNQHPEQEPPPHKENLQEAQDTVRSRSGYSEEPEINIGRSNMKEDVELNDKHSSK--N 407
++ + E+E +E ++ +D RSR + + R ++ + +HSS
Sbjct: 8 SRHEEEEEEEEEEEEEKREDVRDHKRSRKKHRSHRSSHTSRDRDRDGRKHKRRHSSSKDK 187
Query: 408 LNHRDGTFAPPSLEAIKKIDRDKVKAALEKRKKAVGNITKKTELMDDEDLFER--VRELE 465
++R E K ++ +++ ++ ++ + D E R E
Sbjct: 188 YSYRGAKHGISDDEHQHSSHHHKYDSSSDEKHRSSRRRQREDSMSDHEHKHSRRHKHETS 367
Query: 466 DGIELAAQSEKNKQDDEDLIERVRELEDGIELAAQSEKNKQDGQKSLSKPVDRSAFENMQ 525
E +S K +ER ELE+G + +S+K++Q + + ++ N
Sbjct: 368 SEDERRHRSRHTKHKSRSHVERESELEEGEVM--KSDKSQQASEVERASREPSASLSNAN 541
Query: 526 QGKH-QDHSEE 535
G D S+E
Sbjct: 542 HGPEISDVSDE 574
Score = 30.8 bits (68), Expect = 0.69
Identities = 29/146 (19%), Positives = 56/146 (37%)
Frame = +2
Query: 465 EDGIELAAQSEKNKQDDEDLIERVRELEDGIELAAQSEKNKQDGQKSLSKPVDRSAFENM 524
E+ E + E+ K++D +R R+ + S +DG+K + +
Sbjct: 17 EEEEEEEEEEEEEKREDVRDHKRSRKKHRSHRSSHTSRDRDRDGRKHKRRHSSSKDKYSY 196
Query: 525 QQGKHQDHSEEHLHLVKPSHETDLSAVEEGEVSALDDIDLGRKSSNHKRKAESSPDKFAE 584
+ KH +EH H H+ D S+ E+ S + HK + +E
Sbjct: 197 RGAKHGISDDEHQH-SSHHHKYDSSSDEKHRSSRRRQREDSMSDHEHKHSRRHKHETSSE 373
Query: 585 GKKRHNYSFGSTHHNRIDYIEDQNNV 610
++RH T H ++E ++ +
Sbjct: 374 DERRHRSR--HTKHKSRSHVERESEL 445
>TC9142 similar to UP|Q8S3U2 (Q8S3U2) EDS1-like protein, partial (20%)
Length = 982
Score = 31.6 bits (70), Expect = 0.40
Identities = 19/57 (33%), Positives = 32/57 (55%)
Frame = +2
Query: 477 NKQDDEDLIERVRELEDGIELAAQSEKNKQDGQKSLSKPVDRSAFENMQQGKHQDHS 533
NK+ ED++ERV +LE ++ +S+K + + L P +EN+ Q +HQ S
Sbjct: 461 NKKPFEDVMERVLQLEPNLKKWTESDKGELKKEVFLKDPTFIKWWENLPQ-EHQAKS 628
>TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting protein 102
(Fragment), partial (13%)
Length = 667
Score = 30.8 bits (68), Expect = 0.69
Identities = 32/119 (26%), Positives = 52/119 (42%), Gaps = 9/119 (7%)
Frame = +1
Query: 426 IDRDKVKAALEKRKKAVGNITKKTELMDDEDLFERVRELEDGIELAAQSEKNKQDDEDLI 485
+D KVK +E KK KK + D++ E A S++ K + E
Sbjct: 43 VDEGKVKVEVEGEKKE-----KKKKKKKDQENGE-----------VASSDEEKAEKEKKK 174
Query: 486 ERVRELEDGIELAAQSEKNK-----QDGQKSLSK----PVDRSAFENMQQGKHQDHSEE 535
+ ++EDG QSEK K QD + + ++ DR + + ++ K+QD EE
Sbjct: 175 KHKVKVEDGSPDLDQSEKKKKKKKDQDAEDNAAEISNGKEDRKSEKKHKKKKNQDAEEE 351
>TC17597 similar to UP|AZF1_YEAST (P41696) Asparagine-rich zinc finger
protein AZF1, partial (3%)
Length = 399
Score = 30.0 bits (66), Expect = 1.2
Identities = 13/43 (30%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +3
Query: 112 KVEETPRPLKDVILVSYEI-IHKKDPAAVQRIKQKEVYEQQKE 153
+++ P+P + ++SYE+ I KK Q+++Q++++EQQ++
Sbjct: 174 QLKPKPKPKPIIFIISYELSISKKQC*QQQQLQQQQLHEQQQQ 302
>TC8053 similar to UP|Q94A20 (Q94A20) AT4g15470/dl3775w, partial (82%)
Length = 1109
Score = 30.0 bits (66), Expect = 1.2
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 23/157 (14%)
Frame = -3
Query: 492 EDGIELAAQSEKNKQDGQKS---LSKPVDR--SAFENMQQGKHQDHS-----------EE 535
+DG E Q+ K K D + +S+ +D+ S +N+ H +S EE
Sbjct: 798 QDGEE-EVQNVKIKSDRGPNVFIISEALDQIVSVIDNITTENHSTNSTIESM*CWAKREE 622
Query: 536 HLHLVKPSHETDLSAVEEGEVSALDDIDL-------GRKSSNHKRKAESSPDKFAEGKKR 588
HLH P+ E A E+ + + L RK NH+R S +
Sbjct: 621 HLH--HPNEEEGKEAGEQNRAKVAEILPLL*SPEGISRKR*NHRRCQNQS--------LK 472
Query: 589 HNYSFGSTHHNRIDYIEDQNNVNLLGHAERDSKRPVQ 625
HN++ G + N GHA R+ K+P Q
Sbjct: 471 HNFTIGVSTGNSN------------GHANRNGKKPKQ 397
>AW428918
Length = 454
Score = 29.6 bits (65), Expect = 1.5
Identities = 17/55 (30%), Positives = 23/55 (40%)
Frame = -3
Query: 523 NMQQGKHQDHSEEHLHLVKPSHETDLSAVEEGEVSALDDIDLGRKSSNHKRKAES 577
N+ +G HS +HLH P ETD E L + RK N K ++
Sbjct: 416 NLLKGSSPSHSSQHLHTEPPHSETDPMCYETETFLELA*QEGQRKQQNQHLKLDA 252
>TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, partial (10%)
Length = 981
Score = 28.5 bits (62), Expect = 3.4
Identities = 24/96 (25%), Positives = 41/96 (42%)
Frame = +3
Query: 274 EGTAGGGNRATPKASTSNDEAATTNNNLYIRGPSPRLEASKLAISKNVVSSANHVGPVSN 333
+G A +R TP+ +T D+ TNN+ P+ LE + S + P S+
Sbjct: 300 DGKASNNSRHTPERNTQQDKVENTNNS-----PTKSLEGC-------LESGSRDKKPRSS 443
Query: 334 HGTNGSTEMIHLVEGDAKGNQHPEQEPPPHKENLQE 369
++ + K NQ+P++ KE+L E
Sbjct: 444 TRQRLGDVVVQRLHKSFKDNQYPDRAT---KESLAE 542
>BP034655
Length = 517
Score = 28.5 bits (62), Expect = 3.4
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +1
Query: 453 DDEDLFERVRELEDGIELAAQSEKNKQDDEDLIERVRELEDGIELAAQSEKNKQDGQKSL 512
DDE+ E E E+ E + E+ ++D+ED + E ED I +A + Q
Sbjct: 139 DDEEEEEEEEEEEEEEEEEEEEEEEEEDEED--DEEDEDEDYIPVAPSHRVSPNVHQNPT 312
Query: 513 SKPVDRSAFENMQQGKHQDHSEE 535
S V+ + +Q Q++SEE
Sbjct: 313 SDSVEVILIPDSEQ---QNYSEE 372
>TC8309 UP|O22306 (O22306) Nlj21, complete
Length = 1063
Score = 28.1 bits (61), Expect = 4.4
Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 12/179 (6%)
Frame = +3
Query: 284 TPKASTSNDEAATTNNNLYIRGPSPRLEASKLAISKNVVSSANHVGPVSNHGT--NGSTE 341
T KAS + E TT + + P P + K + V+ A+ P ++ + +TE
Sbjct: 234 TTKASLKDHEEKTTEQVVETQTPEPEPVSEKTKEEDSAVTEASEPEPTEDNPSIEAETTE 413
Query: 342 MIHLV---------EGDAKGNQHPEQEPPPHKENLQEAQDTVRSRSGYSEEPE-INIGRS 391
++ V + + K + ++E KE + A EEPE + +
Sbjct: 414 VVEEVVTVTVTDEPKVEEKTDGEAKKEATETKETKESADPVEVQAPEAGEEPETVTLKED 593
Query: 392 NMKEDVELNDKHSSKNLNHRDGTFAPPSLEAIKKIDRDKVKAALEKRKKAVGNITKKTE 450
KE+ ++ + + + + + T AP + +K+D + E+ + +KTE
Sbjct: 594 ASKEEEKVAEPEAKEEVVN---TEAPDEKKEEEKLDTEGSDEKKEEEEVIKVAPAEKTE 761
>TC12406 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial (6%)
Length = 450
Score = 28.1 bits (61), Expect = 4.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 261 LYEQNQIAPSNDVEG-TAGGGNRATPKASTSNDEAATTNNNLYIRGPSPRLEASKL 315
L Q Q+ P N + G GGG A N++ TT +LY+ P + S+L
Sbjct: 263 LMAQVQVQPQNAMPGPNGGGGGGAAAAGGAGNNQFVTT--SLYVGDLDPNVTDSQL 424
>CB829198
Length = 562
Score = 28.1 bits (61), Expect = 4.4
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Frame = +3
Query: 456 DLFERVRELEDGIELAAQSEKNKQDDEDLIERVRELEDGIELAAQS-------EKNKQDG 508
DL +R + + ++L Q+E Q++E ++ D +E + S E+ +DG
Sbjct: 159 DLSDRKAFIREQVDLFLQTEHQPQEEEQHDDQEEPQNDDVEESQHSDSKEETEEEEDEDG 338
Query: 509 QKSLSKPVDRSAFENMQQGKHQDHSEEHL 537
+KP A + + + + S+ +
Sbjct: 339 DNENNKPKRAKAAKKKKNKERSNKSDNEV 425
>TC14620
Length = 1260
Score = 27.7 bits (60), Expect = 5.8
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 91 RQSHAKN--DRRIIATSCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAVQRIKQKEVY 148
+++H +N RR+ SC + E +I +SY+I+H + I K
Sbjct: 805 KRNHKQNTESRRV---SCFSMIYTTREVIHSFNCIIQLSYKILHSQLHFTSSEIHSKSGS 635
Query: 149 EQQKELILLGERVVLATLGFDFHVQHPYKPLV 180
E L ER + +TL D PY+ L+
Sbjct: 634 EPSSS*TLRMERTISSTLKAD---TTPYRKLL 548
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.130 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,752,311
Number of Sequences: 28460
Number of extensions: 124963
Number of successful extensions: 609
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of query: 629
length of database: 4,897,600
effective HSP length: 96
effective length of query: 533
effective length of database: 2,165,440
effective search space: 1154179520
effective search space used: 1154179520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0176a.15