BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0176a.14
(641 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP067249 221 4e-58
TC12060 similar to UP|Q9FKE6 (Q9FKE6) Similarity to cyclin, part... 216 1e-56
BP040784 203 6e-53
TC13006 172 1e-43
BP034132 147 7e-36
AW720223 75 4e-14
TC13374 similar to UP|Q9FJK7 (Q9FJK7) Cyclin C-like protein, par... 64 7e-11
TC10968 39 0.003
BP053211 37 0.007
TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding l... 35 0.037
TC9875 similar to UP|Q9FJK7 (Q9FJK7) Cyclin C-like protein, part... 34 0.083
BI419653 32 0.41
TC18339 weakly similar to GB|AAF21246.1|6648604|AF048705 ubiquit... 30 0.91
TC17394 30 1.2
TC14415 similar to UP|O04237 (O04237) Transcription factor, part... 30 1.6
TC17597 similar to UP|AZF1_YEAST (P41696) Asparagine-rich zinc f... 29 2.0
AV410992 28 3.5
TC10201 similar to UP|O81618 (O81618) F8M12.11 protein, partial ... 28 3.5
TC11624 28 4.5
BP067888 28 5.9
>BP067249
Length = 514
Score = 221 bits (562), Expect = 4e-58
Identities = 110/123 (89%), Positives = 115/123 (93%)
Frame = +3
Query: 1 MAGLLLGDISHHGSYQSGSQGGSQDNQEYGSRWYFSRKEIEENSPSKQDGVDLKKEAYLR 60
MAGLLLGD SH G++QSGSQG SQ+N GSRWY SRKEIEENSPSKQDGVDLKKEAYLR
Sbjct: 153 MAGLLLGDTSHDGTHQSGSQGCSQEN---GSRWYLSRKEIEENSPSKQDGVDLKKEAYLR 323
Query: 61 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRIIATVCMFLAGKVEETP 120
KSYCT+LQDLGMRLKVPQVTIA+AIIFCHRFFLRQSHAKNDRRIIAT CMFLAGKVEETP
Sbjct: 324 KSYCTYLQDLGMRLKVPQVTIASAIIFCHRFFLRQSHAKNDRRIIATSCMFLAGKVEETP 503
Query: 121 RPL 123
RPL
Sbjct: 504 RPL 512
>TC12060 similar to UP|Q9FKE6 (Q9FKE6) Similarity to cyclin, partial (13%)
Length = 554
Score = 216 bits (549), Expect = 1e-56
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = -3
Query: 1 MAGLLLGDISHHGSYQSGSQGGSQDNQEYGSRWYFSRKEIEENSPSKQDGVDLKKEAYLR 60
MAGLLLGDISHHGSYQSGSQGGSQDNQEYGSRWYFSRKEIEENSPSKQDGVDLKKEAYLR
Sbjct: 312 MAGLLLGDISHHGSYQSGSQGGSQDNQEYGSRWYFSRKEIEENSPSKQDGVDLKKEAYLR 133
Query: 61 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRI 104
KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRI
Sbjct: 132 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRI 1
>BP040784
Length = 521
Score = 203 bits (517), Expect = 6e-53
Identities = 97/114 (85%), Positives = 101/114 (88%)
Frame = -1
Query: 528 LDRSAFENMQHGKHQDHSEEHLHLVKPSHEADLSAVEEGEVSALDDIDLGPKSSNQKRKV 587
+DRSAFENMQ GKHQDHSEEHLHLVKPSHE DLSAVEEGEVSALDDIDLG KSSN KRK
Sbjct: 521 VDRSAFENMQQGKHQDHSEEHLHLVKPSHETDLSAVEEGEVSALDDIDLGRKSSNHKRKA 342
Query: 588 ESSPDNFVEGKKRHNYGSGSTHHNRIDYIEDRNKVNRLGHAERDSKRHIQENQV 641
ESSPD F EGKKRHNY GSTHHNRIDYIED+N VN LGHAERDSKR +QEN +
Sbjct: 341 ESSPDKFAEGKKRHNYSFGSTHHNRIDYIEDQNNVNLLGHAERDSKRPVQENHI 180
>TC13006
Length = 497
Score = 172 bits (437), Expect = 1e-43
Identities = 84/85 (98%), Positives = 84/85 (98%)
Frame = +3
Query: 557 EADLSAVEEGEVSALDDIDLGPKSSNQKRKVESSPDNFVEGKKRHNYGSGSTHHNRIDYI 616
EADLSAVEEGEVSALDDIDLGPKSSNQKRKVESSPDNFVEGKKRHNYGSGSTHHNRIDYI
Sbjct: 3 EADLSAVEEGEVSALDDIDLGPKSSNQKRKVESSPDNFVEGKKRHNYGSGSTHHNRIDYI 182
Query: 617 EDRNKVNRLGHAERDSKRHIQENQV 641
EDRNKVNRLGHAERDSKRHIQEN V
Sbjct: 183 EDRNKVNRLGHAERDSKRHIQENPV 257
>BP034132
Length = 499
Score = 147 bits (370), Expect = 7e-36
Identities = 74/100 (74%), Positives = 81/100 (81%), Gaps = 1/100 (1%)
Frame = +2
Query: 1 MAGLLLGDISHHGSYQSGSQGGSQDNQEYG-SRWYFSRKEIEENSPSKQDGVDLKKEAYL 59
MA L+ G++SHHG S D QE RWY SRKEIEE+SPS++DG+DLKKE YL
Sbjct: 224 MAALVAGELSHHGV--------SDDKQEEALGRWYMSRKEIEEHSPSRKDGIDLKKETYL 379
Query: 60 RKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAK 99
RKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAK
Sbjct: 380 RKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAK 499
>AW720223
Length = 588
Score = 74.7 bits (182), Expect = 4e-14
Identities = 34/91 (37%), Positives = 59/91 (64%)
Frame = +3
Query: 43 NSPSKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDR 102
NSPS++DG+D E LR C +Q+ G+ L++PQ +AT + HRF+ ++S A+ +
Sbjct: 222 NSPSRKDGIDETTETTLRIYGCDLIQESGILLRLPQAVMATGQVLFHRFYCKKSFARFNV 401
Query: 103 RIIATVCMFLAGKVEETPRPLKDVILVSYEI 133
+ +A C++LA K+EE P+ + VI+V + +
Sbjct: 402 KKVAASCVWLASKLEENPKKARQVIIVFHRM 494
>TC13374 similar to UP|Q9FJK7 (Q9FJK7) Cyclin C-like protein, partial (64%)
Length = 569
Score = 63.9 bits (154), Expect = 7e-11
Identities = 39/145 (26%), Positives = 74/145 (50%)
Frame = +2
Query: 43 NSPSKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDR 102
N K+ G+ L+ ++ ++ L ++KV Q +ATA+ + R + R+S + D
Sbjct: 146 NPLDKEKGITLEDFKLIKMHMANYILKLAQQVKVRQRVVATAVAYMRRVYTRKSMTEYDP 325
Query: 103 RIIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAVQRIKQKDVYEQQKELILLGE 162
R++A C++LA K EE+ ++ +LV Y ++++ D Y + + IL E
Sbjct: 326 RLVAPTCLYLASKAEES--TVQARLLVFY----------IKKLYADDKYRYEIKDILEME 469
Query: 163 RVVLATLGFDLNVHHPYKPLVEAIK 187
+L L + L V HPY+ L + ++
Sbjct: 470 MKILEALNYYLVVFHPYRSLSQFLQ 544
>TC10968
Length = 531
Score = 38.5 bits (88), Expect = 0.003
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +3
Query: 219 HHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQM 263
HHIAAGA++LAA+FL + + + E + QEF TP L++VS +
Sbjct: 3 HHIAAGALYLAAEFLYMDVAAH-ENI-CQEFQTTPSVLQDVSKHI 131
>BP053211
Length = 448
Score = 37.4 bits (85), Expect = 0.007
Identities = 27/69 (39%), Positives = 38/69 (54%)
Frame = -3
Query: 564 EEGEVSALDDIDLGPKSSNQKRKVESSPDNFVEGKKRHNYGSGSTHHNRIDYIEDRNKVN 623
EEGE+ ID N+KRK+ES P E KKR GS++ N D+ E+ N
Sbjct: 431 EEGEM-----IDDASSFLNRKRKIESPPSREPEMKKR----LGSSYQN--DHAEEGNGEA 285
Query: 624 RLGHAERDS 632
R+G+A+ D+
Sbjct: 284 RVGYADGDA 258
>TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding
like-protein, partial (16%)
Length = 779
Score = 35.0 bits (79), Expect = 0.037
Identities = 40/190 (21%), Positives = 76/190 (39%), Gaps = 4/190 (2%)
Frame = +2
Query: 388 AKGNQHPKQEPSTYEEKMQEAQDMVRSRSGYGKEQESNVGRSNIKEEDVELNDKHSSKN- 446
++ + ++E EEK ++ +D RSR + + S+ R ++ SSK+
Sbjct: 8 SRHEEEEEEEEEEEEEKREDVRDHKRSRKKHRSHRSSHTSRDRDRDGRKHKRRHSSSKDK 187
Query: 447 LNHRDATFASPNLEGIKKIDRDKVKAALEKRKKATGNISKKTELVDDEDLIER--VRELE 504
++R A + E K ++ +++ +++ ++ + D E R E
Sbjct: 188 YSYRGAKHGISDDEHQHSSHHHKYDSSSDEKHRSSRRRQREDSMSDHEHKHSRRHKHETS 367
Query: 505 DGIELAAQSEKNKQDGRKSLSKSLDRSAFENMQHGKHQDHSEEHLHLVKPSHEADLSAVE 564
E +S K R + + + E M+ K Q SE +PS A LS
Sbjct: 368 SEDERRHRSRHTKHKSRSHVERESELEEGEVMKSDKSQQASEVERASREPS--ASLSNAN 541
Query: 565 EG-EVSALDD 573
G E+S + D
Sbjct: 542 HGPEISDVSD 571
>TC9875 similar to UP|Q9FJK7 (Q9FJK7) Cyclin C-like protein, partial (26%)
Length = 553
Score = 33.9 bits (76), Expect = 0.083
Identities = 17/55 (30%), Positives = 29/55 (51%)
Frame = +1
Query: 218 PHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRM 272
PH IA I++A+ + VW++E V ++ +S ++L+ YE NRM
Sbjct: 10 PHLIALACIYIASA-----VREKDTTVWFEELHVDMNVVKNISMEILDFYESNRM 159
>BI419653
Length = 629
Score = 31.6 bits (70), Expect = 0.41
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +2
Query: 281 TTGGGNRATPKAPTSNDEAASTNRNLHIGGPSSTLETSKPATSKNVFVSSANHVGRPVSN 340
+TG + P PT+ A S++ N G P S+ +TS S ++ P S
Sbjct: 191 STG*ASTLLPPPPTTTSSATSSSPNPRPGNPGRAPSPSRSSTSDPTTPSGSSDGPAPKST 370
Query: 341 HGVSGSTEVKHPVED 355
+T + +P +
Sbjct: 371 RSARTTTTIPYPAPE 415
>TC18339 weakly similar to GB|AAF21246.1|6648604|AF048705 ubiquitin-specific
protease {Arabidopsis thaliana;}, partial (12%)
Length = 500
Score = 30.4 bits (67), Expect = 0.91
Identities = 33/138 (23%), Positives = 60/138 (42%), Gaps = 20/138 (14%)
Frame = +3
Query: 392 QHPKQEPSTY-EEKMQEAQDMVRSRSGYGKEQ------ESNVGRSNIKEEDVELNDKHSS 444
+ K +P + EE+ + ++ R R G++ S+ + EE + + D +
Sbjct: 42 EEKKGKPGDWVEEEREREREREREREREGEKMTEVSMCSSSTSELSPDEERIMIRDIALA 221
Query: 445 KNLNHRDA-TFASPNLE----GIKKIDRDKVKAA------LEKRKKATGNISKKTELVDD 493
N ++ TF S GI+ +++D + LE+ A N+SKK +D+
Sbjct: 222 SQANSKEGDTFFSITQRWWQHGIEYVNQDHTNTSYDGSSFLEQCDMAYANVSKKASGIDN 401
Query: 494 EDLIERV--RELEDGIEL 509
DLI V + GIE+
Sbjct: 402 SDLIHDVAPEDSSTGIEI 455
>TC17394
Length = 441
Score = 30.0 bits (66), Expect = 1.2
Identities = 18/57 (31%), Positives = 27/57 (46%)
Frame = +2
Query: 360 NLHPKQEPSAYEENMQEAQDMVRSRSGYAKGNQHPKQEPSTYEEKMQEAQDMVRSRS 416
+LH PSA + + AQD SR + N P+ E T ++ QE + V + S
Sbjct: 239 SLHRLHPPSASTDEFEVAQDSTDSR----QDNPEPEPETETSDKPQQEEEQKVSTSS 397
>TC14415 similar to UP|O04237 (O04237) Transcription factor, partial (83%)
Length = 1666
Score = 29.6 bits (65), Expect = 1.6
Identities = 27/118 (22%), Positives = 55/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 371 EENMQE---AQDMVRSRSGYAKGNQHPKQEPSTYEEKMQEAQDMVRSRSGYGKEQESNVG 427
E+N+ + A + V + + N++ ++EP E ++E + ++ + + Q++
Sbjct: 830 EKNLSDEKPAVEDVADGNKESSANENEEKEPEDKEMTLEEYEKVLEEKRKALQAQKTEGR 1009
Query: 428 RSNIKEEDVELNDKHSSKNLNHRDATFASPNLEGIKKIDRDKVKAALEKRKKATGNIS 485
+ +IKE + + K+ N A S D+DK K A EK +KA ++S
Sbjct: 1010KVDIKEFE-SMQPLSCKKDNNDIFAKLGS---------DKDKRKEAFEKEEKAKKSVS 1153
>TC17597 similar to UP|AZF1_YEAST (P41696) Asparagine-rich zinc finger
protein AZF1, partial (3%)
Length = 399
Score = 29.3 bits (64), Expect = 2.0
Identities = 13/43 (30%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 115 KVEETPRPLKDVILVSYEI-IHKKDPAAVQRIKQKDVYEQQKE 156
+++ P+P + ++SYE+ I KK Q+++Q+ ++EQQ++
Sbjct: 174 QLKPKPKPKPIIFIISYELSISKKQC*QQQQLQQQQLHEQQQQ 302
>AV410992
Length = 418
Score = 28.5 bits (62), Expect = 3.5
Identities = 19/68 (27%), Positives = 24/68 (34%)
Frame = +3
Query: 306 LHIGGPSSTLETSKPATSKNVFVSSANHVGRPVSNHGVSGSTEVKHPVEDDVKGNLHPKQ 365
LH+ P +T KP +S NH P + STE P G L PK
Sbjct: 66 LHLPSPVPPSKTFKP-------FASTNHRHNPPPSENPPFSTESDSPTRSSAPGQLTPKT 224
Query: 366 EPSAYEEN 373
+ N
Sbjct: 225 RTTTTNNN 248
>TC10201 similar to UP|O81618 (O81618) F8M12.11 protein, partial (8%)
Length = 687
Score = 28.5 bits (62), Expect = 3.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 247 QEFDVTPRQLEEVSNQMLELYEQNRM---AQSNDVEGTTGGGNRATP 290
+ DV P+Q + + + ++ RM + NDV GGGNR P
Sbjct: 129 ENVDVMPKQKPKTLDSLFANMKEQRMRDLSMRNDVGPRNGGGNRRQP 269
>TC11624
Length = 531
Score = 28.1 bits (61), Expect = 4.5
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 592 DNFVEGKKRHNYG-SGSTHHNRIDYIEDRNKVNRLGHAER 630
+N E K R Y S THH+ +YI + +VNRL H+++
Sbjct: 510 NNHKERKLRIYYI*SSVTHHSIFNYI*ENVEVNRLSHSKK 391
>BP067888
Length = 534
Score = 27.7 bits (60), Expect = 5.9
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = -2
Query: 416 SGYGKEQESNVGRSNIKEEDVELNDKHSSKNLNHRD 451
SG+ + E+N+G ++ E E+ HSS + H++
Sbjct: 446 SGHERNTEANIGFDFLRPEPAEVPPHHSSPVMRHQE 339
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,585,492
Number of Sequences: 28460
Number of extensions: 117671
Number of successful extensions: 546
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of query: 641
length of database: 4,897,600
effective HSP length: 96
effective length of query: 545
effective length of database: 2,165,440
effective search space: 1180164800
effective search space used: 1180164800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0176a.14