TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0176a.13
         (515 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP056197                                                               59  2e-09
BE122582                                                               49  2e-06
BP053926                                                               42  2e-04
CB828788                                                               35  0.038
TC15063 homologue to UP|SARA_ARATH (O04834) GTP-binding protein ...    30  0.73
TC12986 homologue to UP|SARB_ARATH (Q01474) GTP-binding protein ...    30  1.2
AV410304                                                               29  2.1
TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogen...    28  2.8
BP043432                                                               28  4.7
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part...    28  4.7
TC16344 similar to UP|AAS44254 (AAS44254) Nucleoside transporter...    27  8.0

>BP056197 
          Length = 585

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 20/142 (14%)
 Frame = +2

Query: 316 SENVLILELKSIADVSFVGMPNAGKSTLLGAISRAKPAVGHYAFTTLRPNLGNLNFDD-- 373
           +E  ++    S      VG+PN GKSTL   +++      ++ F T+ PN   +N  D  
Sbjct: 104 AERPILGRFSSHLKXGIVGLPNVGKSTLFNTLTKMAIPAENFPFCTIEPNEARVNVPDER 283

Query: 374 ---------------FSITVADIPGLIKGAHQNRGLGHAFLRHIERTKVLAYVV---DLA 415
                            + + DI G ++GAHQ +GLG++FL HI     + +V+   + +
Sbjct: 284 FEWLCQLFKPKSEVSAFLEIHDIAGXVRGAHQGQGLGNSFLSHIRAVDGIFHVLRAFEDS 463

Query: 416 AALHGRKGIPPWEQLKDLILEL 437
             +H    + P   L+ +  EL
Sbjct: 464 DIVHVDDSVDPVRDLETITEEL 529


>BE122582 
          Length = 320

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 25/72 (34%), Positives = 43/72 (59%)
 Frame = +3

Query: 380 DIPGLIKGAHQNRGLGHAFLRHIERTKVLAYVVDLAAALHGRKGIPPWEQLKDLILELEY 439
           ++PGL++GAH+  GLGH FLRH ER   L +VVD ++         P  + + + LEL+ 
Sbjct: 12  ELPGLLEGAHRGFGLGHEFLRHTERCSALVHVVDGSSP-------QPDLEFEAVRLELKL 170

Query: 440 HQDGLSNRPSLI 451
               ++++P ++
Sbjct: 171 FNPEIADKPFIV 206


>BP053926 
          Length = 562

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 34/65 (51%)
 Frame = +1

Query: 330 VSFVGMPNAGKSTLLGAISRAKPAVGHYAFTTLRPNLGNLNFDDFSITVADIPGLIKGAH 389
           V   G PN GKS+ +  I+RA   V  YAFTT    +G+ ++      V D PG++    
Sbjct: 211 VLICGYPNVGKSSFINKITRADVEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 390

Query: 390 QNRGL 394
           ++R +
Sbjct: 391 EDRNI 405


>CB828788 
          Length = 448

 Score = 34.7 bits (78), Expect = 0.038
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
 Frame = +2

Query: 294 QHISNLEDSDSVCSSLNAGMPGSENVLILELKSIADVSFVGMPNAGKSTLLGA-ISRAKP 352
           Q  SN ED+ S         P +E     E K    ++ VG PN GKSTL+   +   + 
Sbjct: 74  QENSNSEDTSS---------PEAE-----ESKLPLQLAIVGRPNVGKSTLMNTLLQEDRV 211

Query: 353 AVGHYAFTTLRPNLGNLNFDDFSITVADIPGLIKGAHQNRGLGHAFLRHIERTKVLAYVV 412
            VG  A  T         F+  +I + D  G ++   Q +G     +    ++ + A+VV
Sbjct: 212 LVGPEAGLTRDSIRTQFEFEGRTIYLVDTAGWLQRTKQEKGAASLSIMQSRKSLLRAHVV 391

Query: 413 DL 414
            L
Sbjct: 392 AL 397


>TC15063 homologue to UP|SARA_ARATH (O04834) GTP-binding protein SAR1A,
           complete
          Length = 933

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 33/133 (24%), Positives = 59/133 (43%), Gaps = 3/133 (2%)
 Frame = +2

Query: 328 ADVSFVGMPNAGKSTLLGAISRAKPAVGHYAF---TTLRPNLGNLNFDDFSITVADIPGL 384
           A + F+G+ NAGK+TLL  + + +  V H      T+   ++G + F  F +        
Sbjct: 227 AKILFLGLDNAGKTTLLHML-KDERLVQHQPTQYPTSEELSIGKIKFKAFDL-------- 379

Query: 385 IKGAHQNRGLGHAFLRHIERTKVLAYVVDLAAALHGRKGIPPWEQLKDLILELEYHQDGL 444
             G HQ       +  +  +   + Y+VD     + ++     ++  D +L      + L
Sbjct: 380 --GGHQI--ARRVWKDYYAKVDAVVYLVD----AYDKERFAESKKELDALLS----DESL 523

Query: 445 SNRPSLIVANKID 457
           +N P LI+ NKID
Sbjct: 524 ANVPFLILGNKID 562


>TC12986 homologue to UP|SARB_ARATH (Q01474) GTP-binding protein SAR1B,
           partial (80%)
          Length = 515

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
 Frame = +1

Query: 328 ADVSFVGMPNAGKSTLLGAISRAKPAVGHYAF---TTLRPNLGNLNFDDFSITVADIPGL 384
           A + F+G+ NAGK+TLL  + + +  V H      T+   ++G + F  F +        
Sbjct: 112 AKILFLGLDNAGKTTLLHML-KDERLVQHQPTQHPTSEELSIGKIKFKAFDL-------- 264

Query: 385 IKGAHQNRGLGHAFLRHIERTKVLAYVVDLAAALHGRKGIPPWEQLKDLILELEYHQDGL 444
             G HQ       +  +  +   +AY+VD     + ++     ++  D +L      + L
Sbjct: 265 --GGHQ--VARRVWKDYYAKVDAVAYLVD----AYDKERFAESKKELDALLS----DEAL 408

Query: 445 SNRPSLIVANKID 457
           ++ P L++ NKID
Sbjct: 409 ASVPFLVLGNKID 447


>AV410304 
          Length = 416

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 2/41 (4%)
 Frame = +3

Query: 148 PSIVKTESSADTDPWEISGALVDDLPDH--GNGSISNATNG 186
           PS+       D+  W  SGA +DD   H  GNG+  N++ G
Sbjct: 180 PSVGSQSDPFDSQKWPNSGAYLDDKKVHYQGNGAHLNSSRG 302


>TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogenase-like
           protein , partial (47%)
          Length = 1041

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 76  RQGRADGGNGGRGG 89
           R+GR  GGNGGRGG
Sbjct: 172 RRGRRGGGNGGRGG 131


>BP043432 
          Length = 487

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 16/45 (35%), Positives = 23/45 (50%), Gaps = 3/45 (6%)
 Frame = -3

Query: 174 DHGNGSISNATNGEEVKTIHPTGCSS---SQAAEKNVEKSVKSGH 215
           DH +GS + A   E++  +HP+G SS       E+N E     GH
Sbjct: 479 DHPSGSSNPAIELEKLTQVHPSGSSSPAIGPPQEQNDEGKSIGGH 345


>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
          Length = 505

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 13/31 (41%), Positives = 16/31 (50%)
 Frame = -3

Query: 58  KAGDGGSGCSSFHRSRHDRQGRADGGNGGRG 88
           ++G GG G     RSR    G  +GG  GRG
Sbjct: 287 RSGGGGGGGGGGRRSRGSGGGGTNGGRRGRG 195


>TC16344 similar to UP|AAS44254 (AAS44254) Nucleoside transporter, NupC
           family, partial (4%)
          Length = 604

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 11/34 (32%), Positives = 16/34 (46%)
 Frame = -3

Query: 197 CSSSQAAEKNVEKSVKSGHVASTDVLSQLSISNG 230
           C SS+    N+E SV   ++  T +     I NG
Sbjct: 530 CKSSRGCGSNIESSVSDSYIKGTRIWKHERIKNG 429


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,059,863
Number of Sequences: 28460
Number of extensions: 105934
Number of successful extensions: 442
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of query: 515
length of database: 4,897,600
effective HSP length: 94
effective length of query: 421
effective length of database: 2,222,360
effective search space: 935613560
effective search space used: 935613560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)