BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0176a.1
(440 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific... 78 5e-32
TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromo... 102 1e-22
TC9055 96 1e-20
AW720409 86 1e-17
BG662160 86 1e-17
BP035281 78 3e-15
TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (... 77 4e-15
BP050476 75 3e-14
BP059894 66 1e-11
TC12990 65 2e-11
TC19187 65 2e-11
BI419994 61 3e-10
TC14801 60 5e-10
AV423520 60 9e-10
AV427033 59 1e-09
TC10709 59 2e-09
AV414925 59 2e-09
BP057238 58 3e-09
AV768207 55 2e-08
BP051299 54 4e-08
>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
protein a, partial (9%)
Length = 1602
Score = 77.8 bits (190), Expect(2) = 5e-32
Identities = 71/230 (30%), Positives = 110/230 (46%), Gaps = 11/230 (4%)
Frame = +1
Query: 207 SLVSVFTL-DGCNGWNGWRDIQNFPLLPFSYDDWGVN-----DGVHLSGTINWMTSRDKS 260
S+ +V+ + DGC WR IQ+FP F+ + WG +GV+L+GTINW+ + +
Sbjct: 727 SVANVYNMGDGC-----WRRIQSFP--DFTREHWGRGTAPDQNGVYLNGTINWVLRLNIA 885
Query: 261 APYYNPVTITVEQLGILSLDLRTETYTLLS----PPKGLDEVPSVVPSVGVLMNCLCFSH 316
I+SLDL +E + LS PP G V + P +GVL + LC H
Sbjct: 886 -------------YDIISLDLGSEVCSRLSLPCFPPPGPKCVYDLPPILGVLKDSLCVLH 1026
Query: 317 DLEGTHFVIWQMKKFGDAKSWTQLLKVRYQDLQREPLHSMFYCHYQLFPLCLHDGDTLIL 376
+ FVIW+M +FG +SWT L D ++E L Y+ + D ++L
Sbjct: 1027NNNDKTFVIWKMNEFGAHESWTPLFNF---DFKKEDL-------YRFDKFFFSENDEVLL 1176
Query: 377 ASYSDRYDGNEAILYDKRANTAERTALETESKYILGFSSF-YYVESLVSP 425
+ + + +LY+ T + + YI +++ YVESLVSP
Sbjct: 1177MTLT------KQVLYNHSDITFKFN--DRVHNYIHDWNNIENYVESLVSP 1302
Score = 77.0 bits (188), Expect(2) = 5e-32
Identities = 65/207 (31%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Frame = +3
Query: 23 PRTQLHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHLHRS-----ALHGK 77
P L ++LI E+LS LPVKSL R +CVCKSW L IS+ F+KLHL RS A
Sbjct: 66 PPPILIDELIWEILSLLPVKSLVRFRCVCKSW-KLTISNPQFMKLHLRRSSAKAAADFAD 242
Query: 78 PHLLLQRENSHHDHREFCVT-HLSGSSLSLVENPW-------------ISLAHNPR-YRL 122
+++ + H H H+ + PW +S+ + P +
Sbjct: 243 SQVVVMTKRDHIAHSPLLSKFHIVHDETFTADEPWPVHALREPFNQPHVSICYAPSLFSS 422
Query: 123 KKGDRY----HVVGCCNGLICLHGYSVDSIFQQGWLSF--WNPATRLMSEKLGCFCVKTK 176
+ D+ ++G CNGL+ + +S LS NPAT+L S+ + K
Sbjct: 423 QNNDKLKGHCRLIGACNGLVSVINEGYNSAESATKLSCCNLNPATKLRSQVSPTLSLCYK 602
Query: 177 NFDVKL-------SFGYDNSTDTYKVV 196
F + FGYD DTYKVV
Sbjct: 603 QFHSLIHSVFRIFGFGYDPLNDTYKVV 683
>TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromosome 5, TAC
clone:K14B20, partial (7%)
Length = 782
Score = 102 bits (254), Expect = 1e-22
Identities = 90/266 (33%), Positives = 129/266 (47%), Gaps = 8/266 (3%)
Frame = +3
Query: 27 LHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHL-----HRSALHGKPHLL 81
L ++LI E+LSWLPVKSL + + V K+W S ISD F+KLHL R+A LL
Sbjct: 48 LPDELIIEILSWLPVKSLLQFRVVSKTWKS-FISDPQFVKLHLLHRLSFRNADFEHTSLL 224
Query: 82 LQRENSHHDHREFCVTHLSGSSL-SLVENPWISLAHNPRYRLKKGDRYHVVGCCNGLICL 140
++ H D +F ++S ++ SL+E+P +A Y +G CNGL+ L
Sbjct: 225 IK---CHTD--DFGRPYISSRTVSSLLESPSAIVASRSCI-----SGYDFIGTCNGLVSL 374
Query: 141 HGYSVDSIFQQGW--LSFWNPATRLMSEKLGCFCVKTKNFDVKLSFGYDNSTDTYKVVFF 198
+ D + + FWNPATR MS+ ++ L FGYD S+DTYKVV
Sbjct: 375 RKLNYDESNTNNFSQVRFWNPATRTMSQDSP---PSWSPRNLHLGFGYDCSSDTYKVV-- 539
Query: 199 EIEKIRRASLVSVFTLDGCNGWNGWRDIQNFPLLPFSYDDWGVNDGVHLSGTINWMTSRD 258
I ++V+V+ + G N WR IQ P P V++S T+NW+ +
Sbjct: 540 --GMIPGLTMVNVYNM----GDNCWRTIQISPHAPMHLQ----GSAVYVSNTLNWLAGTN 689
Query: 259 KSAPYYNPVTITVEQLGILSLDLRTE 284
PY+ I+S DL E
Sbjct: 690 ---PYF-----------IVSFDLEKE 725
>TC9055
Length = 577
Score = 95.9 bits (237), Expect = 1e-20
Identities = 66/177 (37%), Positives = 93/177 (52%)
Frame = +2
Query: 249 GTINWMTSRDKSAPYYNPVTITVEQLGILSLDLRTETYTLLSPPKGLDEVPSVVPSVGVL 308
G +NW+ + K P+ EQL I+SLD+R E Y LLS P+G E+PS + VL
Sbjct: 2 GCVNWLAN--KFEPF--------EQLVIVSLDMRQEAYRLLSLPQGTSELPSA--EIQVL 145
Query: 309 MNCLCFSHDLEGTHFVIWQMKKFGDAKSWTQLLKVRYQDLQREPLHSMFYCHYQLFPLCL 368
NCLC +D + THFV W+M ++G +SWT LL + Y+ L+ + FY + L LC
Sbjct: 146 GNCLCLFYDFKRTHFVAWKMSEYGLPESWTPLLTISYEHLRWD---HRFYLNQWLICLC- 313
Query: 369 HDGDTLILASYSDRYDGNEAILYDKRANTAERTALETESKYILGFSSFYYVESLVSP 425
DG +LA I+Y+ N+ + L + L + YVESLVSP
Sbjct: 314 GDGHIFMLAKKQ-----KLVIIYNLSDNSVKYVELASNK---LWLDANDYVESLVSP 460
>AW720409
Length = 575
Score = 85.9 bits (211), Expect = 1e-17
Identities = 63/170 (37%), Positives = 84/170 (49%), Gaps = 10/170 (5%)
Frame = +3
Query: 30 DLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHLHRSALHGKPHLLLQREN--S 87
+L E+LSWLPVK+L R CV KSW SLI D+ F KLHL RS + +L ++ S
Sbjct: 102 ELWIEILSWLPVKTLMRFSCVSKSWKSLIYQDRDFKKLHLDRSPKNNNQVILTLQKPLFS 281
Query: 88 HHDHREFCVTHL----SGSSLSLVENPWISLAHNPRYRLKKGDRYH-VVGCCNGLICLHG 142
F V L SS S++++ I + D YH +G CNGL+CL+G
Sbjct: 282 GRTFFPFPVRRLLQDQEPSSSSIIDD--IPFEEEDE---DEEDNYHDTIGSCNGLVCLYG 446
Query: 143 YSVDSIFQQGWLSFWNPATRLMSEK---LGCFCVKTKNFDVKLSFGYDNS 189
+ + W WNPATR K L T +F +FGYD+S
Sbjct: 447 INDHGL----WFRLWNPATRFRFHKSPPLDAVIGSTLHF----AFGYDHS 572
>BG662160
Length = 445
Score = 85.9 bits (211), Expect = 1e-17
Identities = 65/173 (37%), Positives = 83/173 (47%), Gaps = 3/173 (1%)
Frame = +2
Query: 21 NLPRTQ-LHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHLHRSALHGKPH 79
N R Q L +L E+LSWLPVKSL R +CV KSW S IISD FIKLHLHRS+ +
Sbjct: 2 NSARAQFLPEELRLEILSWLPVKSLVRFRCVSKSWKS-IISDSQFIKLHLHRSSSTTR-- 172
Query: 80 LLLQRENSHHDHREFCVTHLSGS-SLSLVENPWISLAHNPRYRLKKGDRYHVVGCCNGLI 138
N+ + + +T S S S + P D Y G CNGL+
Sbjct: 173 ------NTDFAYLQSLITSPRKSRSASTIAIP---------------DDYDFCGTCNGLV 289
Query: 139 CLHGYSVDSIFQ-QGWLSFWNPATRLMSEKLGCFCVKTKNFDVKLSFGYDNST 190
CLH D + + WNPA R MS++ + +D F YD+ST
Sbjct: 290 CLHSSKYDRKDKYTSHVRLWNPAMRSMSQRSPPLYLPIV-YDSYFGFDYDSST 445
>BP035281
Length = 498
Score = 77.8 bits (190), Expect = 3e-15
Identities = 47/115 (40%), Positives = 66/115 (56%), Gaps = 2/115 (1%)
Frame = +2
Query: 29 NDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHLHRSALHGKPHLLLQRENSH 88
++L+ E+LSWLPV SL R KCVCKSW SLI ++ F KL L R++L H++L +S
Sbjct: 128 SELVIEILSWLPVLSLIRFKCVCKSWKSLISHNKAFAKLQLERTSLKIN-HVILTSSDS- 301
Query: 89 HDHREFCVTHLSGSSLSLVENPWISLAHNPR--YRLKKGDRYHVVGCCNGLICLH 141
+ + S L+E+P + + RL K + V+G CNGLICLH
Sbjct: 302 --------SFIPCSLPRLLEDPSSIMDQDQDRCLRLDKFEYNEVIGSCNGLICLH 442
>TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (SLF)-S4
protein, partial (10%)
Length = 551
Score = 77.4 bits (189), Expect = 4e-15
Identities = 75/242 (30%), Positives = 101/242 (40%), Gaps = 4/242 (1%)
Frame = +3
Query: 27 LHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHL-HRSALHGKPHLLLQRE 85
L ++LI E+LSWLPVKSL + + V K+W S I SD F+KLHL HR L
Sbjct: 21 LPDELIIEILSWLPVKSLLQFRVVSKTWKSFI-SDPQFVKLHLLHR----------LSFR 167
Query: 86 NSHHDHREF---CVTHLSGSSLSLVENPWISLAHNPRYRLKKGDRYHVVGCCNGLICLHG 142
N+ +H C T G P+IS
Sbjct: 168 NADFEHTSLLIKCHTDDFG-------RPYIS----------------------------- 239
Query: 143 YSVDSIFQQGWLSFWNPATRLMSEKLGCFCVKTKNFDVKLSFGYDNSTDTYKVVFFEIEK 202
+ FWNPATR MS+ ++ L FGYD S+DTYKVV
Sbjct: 240 --------SRTVRFWNPATRTMSQDSP---PSWSPRNLHLGFGYDCSSDTYKVV----GM 374
Query: 203 IRRASLVSVFTLDGCNGWNGWRDIQNFPLLPFSYDDWGVNDGVHLSGTINWMTSRDKSAP 262
I ++V+V+ + G N WR IQ P P V++S T+NW+ + P
Sbjct: 375 IPGLTMVNVYNM----GDNCWRTIQISPHAPMHLQ----GSAVYVSNTLNWLAGTN---P 521
Query: 263 YY 264
Y+
Sbjct: 522 YF 527
>BP050476
Length = 520
Score = 74.7 bits (182), Expect = 3e-14
Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Frame = +2
Query: 61 DQTFIKLHLHRSALHGKPHLLLQRENSHHDHREFCVTHLSGSSLSLVENPWISLAHNPRY 120
D +F+KLHL+RS + H+LL N +D + S L+E+ + Y
Sbjct: 17 DSSFVKLHLNRSPKN--THILLNIANDPYDFENDDTWVVPSSVCCLIEDLSSMIDAKGCY 190
Query: 121 RLKKGDRYHVVGCCNGLICLHGYSVDSIFQQGWLSFWNPATRLMSEKLGCFCVKTKNF-- 178
LK G + V+G NGLIC + ++ W+ WNPAT L S+K F + +
Sbjct: 191 LLKDG--HLVIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSVD 364
Query: 179 ----DVKLSFGYDNSTDTYKVV 196
V L FGYDN DTYKVV
Sbjct: 365 APPGKVNLGFGYDNLHDTYKVV 430
>BP059894
Length = 474
Score = 66.2 bits (160), Expect = 1e-11
Identities = 41/110 (37%), Positives = 61/110 (55%)
Frame = -3
Query: 290 SPPKGLDEVPSVVPSVGVLMNCLCFSHDLEGTHFVIWQMKKFGDAKSWTQLLKVRYQDLQ 349
S PKG E+P V + VL NCLC HD THFV W+M ++G +SWT++L + YQ Q
Sbjct: 472 SLPKGTSELPYV--EIQVLGNCLCLFHDDNRTHFVGWKMTEYGVPESWTRMLSISYQHFQ 299
Query: 350 REPLHSMFYCHYQLFPLCLHDGDTLILASYSDRYDGNEAILYDKRANTAE 399
+ + H L LC DG+ L+LA + +G I+++ N+ +
Sbjct: 298 ---CNDVILRHRWLVCLC-GDGNILMLA----KDEGGLVIIFNLSDNSVK 173
>TC12990
Length = 518
Score = 65.5 bits (158), Expect = 2e-11
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Frame = +1
Query: 306 GVLMNCLCFSHDLEGTH-FVIWQMKKFGDAKSWTQLLKVRYQDLQREPLHSMFYCHYQLF 364
GVL CLC S + + TH FV+WQMK+FG +SWTQL + + H F
Sbjct: 1 GVLGGCLCISQNNKETHSFVVWQMKEFGVHESWTQLFNIIVHER---------ILHTPCF 153
Query: 365 PLCL-HDGDTLILASYSDRYDGNEAILYDKRANTAERTALETESKYILGFSSFYYVESLV 423
+C+ +GD L+ A + ++A+LY++R E T + I+G Y+ESLV
Sbjct: 154 AMCMSENGDALLFA----KSGVSQAVLYNQREKKFEDTKI---GNNIVGSYVRNYIESLV 312
Query: 424 SP 425
SP
Sbjct: 313 SP 318
>TC19187
Length = 632
Score = 65.1 bits (157), Expect = 2e-11
Identities = 37/103 (35%), Positives = 57/103 (54%), Gaps = 1/103 (0%)
Frame = +1
Query: 242 NDGVHLSGTINWMTSRDKSAPYYNPVTITVEQLGIL-SLDLRTETYTLLSPPKGLDEVPS 300
+ G +SGT+NW + ++ V L I+ SLDL+ ETY + PP E S
Sbjct: 1 SSGKFVSGTLNWAAN----------YSVGVSSLWIIVSLDLQKETYKEILPPDYEKEECS 150
Query: 301 VVPSVGVLMNCLCFSHDLEGTHFVIWQMKKFGDAKSWTQLLKV 343
P++ VL CLC ++D + T FV+W MK +G +SW +L+ +
Sbjct: 151 T-PTLSVLKGCLCMNYDHKRTDFVVWMMKDYGVRESWVKLVTI 276
>BI419994
Length = 549
Score = 61.2 bits (147), Expect = 3e-10
Identities = 57/186 (30%), Positives = 78/186 (41%), Gaps = 11/186 (5%)
Frame = +2
Query: 25 TQLHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHL-------HRSALHGK 77
+ L ++LI ++L LPV+SL R K VCKSW L ISD F K H HR L+
Sbjct: 41 SHLPDELILQILLRLPVRSLLRFKTVCKSWRYL-ISDPQFTKSHFNLAASPTHRIFLNNT 217
Query: 78 PHL---LLQRENSHHDHREFCVTHLSGSSLSLVENPWISLAHNPRYRLKKG-DRYHVVGC 133
L ++S HD SSL ++ P ++ H +R V+G
Sbjct: 218 NGF*IESLDTDSSLHDE----------SSLVHLKFP-LAPPHPDNHRFGSSVTGLKVLGS 364
Query: 134 CNGLICLHGYSVDSIFQQGWLSFWNPATRLMSEKLGCFCVKTKNFDVKLSFGYDNSTDTY 193
C G + L + QG + WNP+T + + GYD S D Y
Sbjct: 365 CRGFVLLANH-------QGNVVVWNPSTGVRRRVPEWCSYLASQCEFLYGIGYDESNDDY 523
Query: 194 KVVFFE 199
VVF E
Sbjct: 524 LVVFIE 541
>TC14801
Length = 595
Score = 60.5 bits (145), Expect = 5e-10
Identities = 42/123 (34%), Positives = 64/123 (51%), Gaps = 2/123 (1%)
Frame = +2
Query: 305 VGVLMNCLCFSHDLEGTH-FVIWQMKKFGDAKSWTQLLKVRYQDLQREPLHSMFYCHYQL 363
+GVL CLC S + TH FV+ QMK++G +SWTQL + + H
Sbjct: 101 LGVLRGCLCISQYHKETHSFVVSQMKEYGVNESWTQLFNIIVHER---------ILHSPC 253
Query: 364 FPLCL-HDGDTLILASYSDRYDGNEAILYDKRANTAERTALETESKYILGFSSFYYVESL 422
F +C+ +GD L+ A ++A+LY++R N E T + + I+G Y+ESL
Sbjct: 254 FAMCMSENGDVLLFAESG----VSQAVLYNQRDNKLEDTKI---ANNIVGSYVRNYIESL 412
Query: 423 VSP 425
+SP
Sbjct: 413 ISP 421
>AV423520
Length = 468
Score = 59.7 bits (143), Expect = 9e-10
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Frame = +3
Query: 13 SMNTPHPDNL----PRTQLHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLH 68
S + PH D+L P L +L+ E+L LPVKSL + +CVCKSWNSLI D F + H
Sbjct: 111 SSSNPHGDSLHPPPPLPTLPFELVVEILCRLPVKSLLQFRCVCKSWNSLISGDPKFARKH 290
Query: 69 LHRSALHGKPHLLL 82
L S H L+
Sbjct: 291 LRCSPKDFTRHHLI 332
>AV427033
Length = 420
Score = 59.3 bits (142), Expect = 1e-09
Identities = 38/86 (44%), Positives = 47/86 (54%)
Frame = +1
Query: 5 SNNTVTVLSMNTPHPDNLPRTQLHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTF 64
S T+T S+ P D+L L DL+ E+L LPV SL + +CVCKSWNSL ISD F
Sbjct: 61 STETLTPPSL-PPAGDSLHAPPLPFDLVVEILCRLPVNSLLQFRCVCKSWNSL-ISDPKF 234
Query: 65 IKLHLHRSALHGKPHLLLQRENSHHD 90
K HLH S H L+ + D
Sbjct: 235 AKNHLHCSPPDFTRHHLMGSDIEDED 312
>TC10709
Length = 578
Score = 58.9 bits (141), Expect = 2e-09
Identities = 41/123 (33%), Positives = 60/123 (48%)
Frame = +3
Query: 303 PSVGVLMNCLCFSHDLEGTHFVIWQMKKFGDAKSWTQLLKVRYQDLQREPLHSMFYCHYQ 362
PS+ VL N + HD H +W+M K+G +SWTQLL + Y E LH + + +
Sbjct: 12 PSLKVLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLSISY-----ERLHCIGFPYIP 176
Query: 363 LFPLCLHDGDTLILASYSDRYDGNEAILYDKRANTAERTALETESKYILGFSSFYYVESL 422
+ L DGD L++A + E I Y+ R + E E + ++ YV SL
Sbjct: 177 VPMFLLEDGDILMIAI----TENLEFIKYNIRDYSMEYIPNPNE---VFWMDAYGYVPSL 335
Query: 423 VSP 425
VSP
Sbjct: 336 VSP 344
>AV414925
Length = 414
Score = 58.5 bits (140), Expect = 2e-09
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Frame = +1
Query: 17 PHPDNLPRTQLHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHLHRSALHG 76
P L ++ ++IA++LS LPV SL R + + KSW SLI S + F+KLHL+ S +
Sbjct: 67 PQNPTLMAEEIPVEVIADILSRLPVTSLLRFRSISKSWRSLIDS-KHFMKLHLNNSLTNP 243
Query: 77 KPHL--LLQRENSHHDHREFCVTHLSGSSLSLVENPWISLAHNPRYRLK-KGDRYHVVGC 133
P+L L+ R N+ +F P I A N + L +R +++G
Sbjct: 244 NPNLTNLILRHNTDLYRADF---------------PSIGAAVNLNHPLMCYSNRINILGS 378
Query: 134 CNGLICL 140
C+GL+C+
Sbjct: 379 CHGLLCI 399
>BP057238
Length = 434
Score = 58.2 bits (139), Expect = 3e-09
Identities = 36/111 (32%), Positives = 53/111 (47%)
Frame = -2
Query: 185 GYDNSTDTYKVVFFEIEKIRRASLVSVFTLDGCNGWNGWRDIQNFPLLPFSYDDWGVNDG 244
GYD S DTYK V I + T C G + WR I + P + DG
Sbjct: 433 GYDESRDTYKAVMALCHSIEPEPKME--TTVYCMGDSCWRKISSSPSSSVLLQQF---DG 269
Query: 245 VHLSGTINWMTSRDKSAPYYNPVTITVEQLGILSLDLRTETYTLLSPPKGL 295
+ G +NW+ + + P Y ++T++QL I+ +R E YT LS P+G+
Sbjct: 268 QFVGGCVNWLALDNLNGPNYEWQSVTLDQLVIVCFHMREEAYTYLSLPEGV 116
>AV768207
Length = 374
Score = 55.5 bits (132), Expect = 2e-08
Identities = 37/87 (42%), Positives = 47/87 (53%)
Frame = +1
Query: 1 MLPNSNNTVTVLSMNTPHPDNLPRTQLHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIIS 60
+LP+S+N P D+ P L +L E+L LPVKSL +L+CVCKSW SL IS
Sbjct: 22 LLPSSSN---------PPGDSPPFPTLPFELGVEILCRLPVKSLLQLRCVCKSWKSL-IS 171
Query: 61 DQTFIKLHLHRSALHGKPHLLLQRENS 87
D F K HL S+ H L N+
Sbjct: 172DPKFAKNHLRCSSTDFTRHRLFLSYNT 252
>BP051299
Length = 539
Score = 54.3 bits (129), Expect = 4e-08
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Frame = +2
Query: 27 LHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHLHRSALHGKPHLLLQREN 86
L ++ AE+L LP K+L + VCKSW SLI S +FI LH + H LLLQ +
Sbjct: 5 LPQEIWAEILHRLPPKTLVKCTSVCKSWRSLITS-TSFISLHRN----HSPSSLLLQLCD 169
Query: 87 SHHDHREFCVTHLSGSSLSLVENPWISLAHNPRYRLKKGDRYHVVGCCNGLICLHGYSVD 146
E + + SL ++P++S + + R + VVG C+GL+C +
Sbjct: 170 ------ERAIPNFIHYSLRR-DDPFLSESSSLRLPSSFNREFSVVGICHGLVC-----IT 313
Query: 147 SIFQQGWLSFWNPATRL---MSEKLGCFCVKTKNFDVKLSFGYDNSTDTYKVV 196
S L NP+ RL + E + + ++FG+D+ + YKV+
Sbjct: 314 STENCRDLIICNPSLRLHITLPEPSDYPSLHS----ASVAFGFDSRNNDYKVI 460
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,152,643
Number of Sequences: 28460
Number of extensions: 177192
Number of successful extensions: 1058
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of query: 440
length of database: 4,897,600
effective HSP length: 93
effective length of query: 347
effective length of database: 2,250,820
effective search space: 781034540
effective search space used: 781034540
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0176a.1