TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0173b.3
         (286 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14664 weakly similar to AAR24650 (AAR24650) At5g63160, partial...   309  4e-85
TC18497 similar to UP|Q9FJX5 (Q9FJX5) Genomic DNA, chromosome 5,...   192  5e-50
TC14373 weakly similar to UP|Q9FJX5 (Q9FJX5) Genomic DNA, chromo...   189  6e-49
TC18112 similar to UP|Q9FJX5 (Q9FJX5) Genomic DNA, chromosome 5,...    66  8e-12
TC11272 similar to UP|Q8LIQ8 (Q8LIQ8) OJ1370_E02.2 protein (OJ13...    60  6e-10
TC17708 similar to UP|Q9FJX5 (Q9FJX5) Genomic DNA, chromosome 5,...    47  3e-06
TC9847 similar to UP|AAR14272 (AAR14272) Predicted protein, part...    32  0.12
TC14626 weakly similar to GB|AAO39889.1|28372814|BT003661 At5g09...    31  0.28
TC9781 similar to PIR|T52422|T52422 alternative oxidase-related ...    28  2.3
TC8418 weakly similar to UP|Q8LFH1 (Q8LFH1) Aldose 1-epimerase-l...    27  5.2
TC16653 similar to UP|Q8W1A1 (Q8W1A1) Adenosine 5'-phosphosulfat...    26  8.9

>TC14664 weakly similar to AAR24650 (AAR24650) At5g63160, partial (24%)
          Length = 589

 Score =  309 bits (791), Expect = 4e-85
 Identities = 150/150 (100%), Positives = 150/150 (100%)
 Frame = +2

Query: 1   MDPQSEQTTRVEPEPDIFIHTSDGTRIPAHSNILASMSPVLESMIDRPRKHRSSERIIQI 60
           MDPQSEQTTRVEPEPDIFIHTSDGTRIPAHSNILASMSPVLESMIDRPRKHRSSERIIQI
Sbjct: 140 MDPQSEQTTRVEPEPDIFIHTSDGTRIPAHSNILASMSPVLESMIDRPRKHRSSERIIQI 319

Query: 61  HGVPGDAVTAFLTFLYSRRCTEDEMDRYGMHLLALSHVYMVPHLKQRCTKGLSQRVNTEN 120
           HGVPGDAVTAFLTFLYSRRCTEDEMDRYGMHLLALSHVYMVPHLKQRCTKGLSQRVNTEN
Sbjct: 320 HGVPGDAVTAFLTFLYSRRCTEDEMDRYGMHLLALSHVYMVPHLKQRCTKGLSQRVNTEN 499

Query: 121 VVDMLQLARLCDAPDLHLRCMNHLTRNFKT 150
           VVDMLQLARLCDAPDLHLRCMNHLTRNFKT
Sbjct: 500 VVDMLQLARLCDAPDLHLRCMNHLTRNFKT 589


>TC18497 similar to UP|Q9FJX5 (Q9FJX5) Genomic DNA, chromosome 5, TAC
           clone:K9I9 (AT5g67480/K9I9_4), partial (61%)
          Length = 696

 Score =  192 bits (488), Expect = 5e-50
 Identities = 102/233 (43%), Positives = 150/233 (63%), Gaps = 2/233 (0%)
 Frame = +2

Query: 19  IHTSDGTRIPAHSNILASMSPVLESMIDRPRKHRSSERIIQIHGVPGDAVTAFLTFLYSR 78
           I+T +G  + AHSNIL   SPV+  M+ + ++H +  R I I GVP D V  F+ FLYS 
Sbjct: 5   INTENGGIVYAHSNILGMTSPVIRGMLKQAKRH-NRWRSISIFGVPHDVVRVFIRFLYSS 181

Query: 79  RCTEDEMDRYGMHLLALSHVYMVPHLKQRCTKGLSQRVNT-ENVVDMLQLARLCDAPDLH 137
           R  ++EM+ Y +HLL LSHVYMVP LK+ C + L   + T +N+VD+ QLA LCDAP L 
Sbjct: 182 RLEKEEMEEYILHLLVLSHVYMVPDLKRECEQKLELGLLTIDNLVDVFQLALLCDAPRLS 361

Query: 138 LRCMNHLTRNFKTVEETEGWRFLTKHDPWLELEVLR-FMDESETRREKSRRSREVQGLYA 196
           L C   + +NFK V  +EGW+ + +  P LE E+L   +DE  +++E+ R+  E + +Y 
Sbjct: 362 LICHRKILKNFKAVSVSEGWKAMKQSHPILEKEILESVIDEENSKKERIRKINERE-IYL 538

Query: 197 QLSEAMECLDHICTEGCTLVGPHHVEVDRKSGPCNKFATCQGVQQLIRHYATC 249
           QL +AME L HIC +GC  +GPH  +  + + PC ++A C+ ++ L+RH+A C
Sbjct: 539 QLYDAMEALVHICRDGCRTIGPHDKDF-KANQPC-RYAACKALELLVRHFAGC 691


>TC14373 weakly similar to UP|Q9FJX5 (Q9FJX5) Genomic DNA, chromosome 5, TAC
           clone:K9I9 (AT5g67480/K9I9_4), partial (12%)
          Length = 974

 Score =  189 bits (479), Expect = 6e-49
 Identities = 82/82 (100%), Positives = 82/82 (100%)
 Frame = +2

Query: 205 LDHICTEGCTLVGPHHVEVDRKSGPCNKFATCQGVQQLIRHYATCTKRMGGGCLRCKRMW 264
           LDHICTEGCTLVGPHHVEVDRKSGPCNKFATCQGVQQLIRHYATCTKRMGGGCLRCKRMW
Sbjct: 2   LDHICTEGCTLVGPHHVEVDRKSGPCNKFATCQGVQQLIRHYATCTKRMGGGCLRCKRMW 181

Query: 265 QLFRLHSYGCEHADSCNVPLCR 286
           QLFRLHSYGCEHADSCNVPLCR
Sbjct: 182 QLFRLHSYGCEHADSCNVPLCR 247


>TC18112 similar to UP|Q9FJX5 (Q9FJX5) Genomic DNA, chromosome 5, TAC
           clone:K9I9 (AT5g67480/K9I9_4), partial (18%)
          Length = 469

 Score = 65.9 bits (159), Expect = 8e-12
 Identities = 27/45 (60%), Positives = 31/45 (68%)
 Frame = +2

Query: 242 LIRHYATCTKRMGGGCLRCKRMWQLFRLHSYGCEHADSCNVPLCR 286
           L+RH+A C  R+ GGC+ CKRMWQL  LHS  C   D C VPLCR
Sbjct: 5   LVRHFAGCKLRVPGGCVHCKRMWQLLELHSRLCADPDFCRVPLCR 139


>TC11272 similar to UP|Q8LIQ8 (Q8LIQ8) OJ1370_E02.2 protein (OJ1354_H07.12
           protein), partial (59%)
          Length = 1070

 Score = 59.7 bits (143), Expect = 6e-10
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
 Frame = +2

Query: 27  IPAHSNILASMSPVLESMIDRPRKHRSSERIIQIHGVPGDAVTAFLTFLYSRRCTEDEMD 86
           +PAH  +L S SPV  +M++   +  S    I+I  +  D + +F+ +LY+       +D
Sbjct: 338 VPAHKAVLVSRSPVFRAMLENDMEE-SRSGTIRITDISYDTLCSFVNYLYTAEAIASSLD 514

Query: 87  -RYGMHLLALSHVYMVPHLKQRCTKGLSQRVNTENVVDMLQLARLCDAPDLHLRCMNHLT 145
            +   +LLAL+  Y V HLK  C K L  ++N E  + +   A   +A  L    +  + 
Sbjct: 515 SQMACNLLALAEKYQVNHLKTFCEKYLISKLNWEKALALYSFANQHNANQLQDAALEFII 694

Query: 146 R-NFKTVEETEGWRFLTKHDPWLELEV 171
             N   +   E ++ L   +P L +E+
Sbjct: 695 NDNMAGLAAHEDYQDLVDSNPRLVVEI 775


>TC17708 similar to UP|Q9FJX5 (Q9FJX5) Genomic DNA, chromosome 5, TAC
           clone:K9I9 (AT5g67480/K9I9_4), partial (10%)
          Length = 556

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = +2

Query: 252 RMGGGCLRCKRMWQLFRLHSYGCEHADSCNVPLCR 286
           R+ G C+ C+RMW L  LHS  C   D C VPLCR
Sbjct: 2   RVPGACVHCQRMWLLLELHSRLCADPDFCRVPLCR 106


>TC9847 similar to UP|AAR14272 (AAR14272) Predicted protein, partial (73%)
          Length = 952

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 18/62 (29%), Positives = 31/62 (49%)
 Frame = +1

Query: 147 NFKTVEETEGWRFLTKHDPWLELEVLRFMDESETRREKSRRSREVQGLYAQLSEAMECLD 206
           +F      +GW  + K    + ++V+  M     + E +R+ RE+ GL  QL E   CL+
Sbjct: 433 DFDAANYPKGW-LIGKKRKLVNVDVVESMRRIAIQ-EMNRKDREIDGLNEQLDEDSRCLE 606

Query: 207 HI 208
           H+
Sbjct: 607 HL 612


>TC14626 weakly similar to GB|AAO39889.1|28372814|BT003661 At5g09570
           {Arabidopsis thaliana;}, partial (60%)
          Length = 745

 Score = 30.8 bits (68), Expect = 0.28
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +2

Query: 227 SGPCNKFATCQGVQQLIRHYATCTK--RMGGGCLRCKRMWQLFRLHSYGCEHADSC 280
           S PC+  ++C   + +   +  C    R G G       W+ +R   YGC H  SC
Sbjct: 125 SQPCSSSSSCSEQRWIYARWPWCNHGPRYGFG------HWKCYRT*GYGCSHGSSC 274


>TC9781 similar to PIR|T52422|T52422 alternative oxidase-related protein
           IMMUTANS [validated] -                Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (23%)
          Length = 588

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 21/79 (26%), Positives = 31/79 (38%), Gaps = 6/79 (7%)
 Frame = +1

Query: 176 DESETRREKSRRSREVQGLY-----AQLSEAMECLD-HICTEGCTLVGPHHVEVDRKSGP 229
           DE +T R  + R  +++ LY      +  EA  C     C     L  PH    D +   
Sbjct: 10  DEFQTSRVPNTRRPKIENLYDVFVNVRDDEAEHCKTMKACQTHGNLRSPHSYAEDDEDTV 189

Query: 230 CNKFATCQGVQQLIRHYAT 248
           C   A C+G+   I+   T
Sbjct: 190 CPLEADCEGIVDCIKKSVT 246


>TC8418 weakly similar to UP|Q8LFH1 (Q8LFH1) Aldose 1-epimerase-like
           protein, partial (87%)
          Length = 1344

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = -2

Query: 237 QGVQQLIRHYATCTKRMGGGCLRC 260
           Q VQ+++ HY  C + M  GCL C
Sbjct: 509 QVVQEILVHYQNCGR*M*CGCLPC 438


>TC16653 similar to UP|Q8W1A1 (Q8W1A1) Adenosine 5'-phosphosulfate reductase,
            partial (69%)
          Length = 1242

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 246  YATCTKRMGGGCLRCKRMWQLFRLHSYGC 274
            + +C+     GC RC+R WQ      + C
Sbjct: 1123 FQSCSS*PHSGC*RCRRQWQCHLYWQHHC 1037


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,005,791
Number of Sequences: 28460
Number of extensions: 93043
Number of successful extensions: 567
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of query: 286
length of database: 4,897,600
effective HSP length: 89
effective length of query: 197
effective length of database: 2,364,660
effective search space: 465838020
effective search space used: 465838020
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)