BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0173b.2
(347 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 40 6e-04
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 38 0.003
BP034655 35 0.014
TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, p... 34 0.041
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 33 0.071
AV780096 33 0.092
TC16667 similar to UP|O64594 (O64594) F17O7.4 (AT1G70420/F17O7_4... 32 0.16
TC9032 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Ara... 31 0.27
AV416122 31 0.35
TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoa... 30 0.60
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 30 0.78
BP029846 30 0.78
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28... 30 0.78
BP038960 29 1.0
BP036655 29 1.3
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 28 1.7
TC8679 homologue to UP|Q43466 (Q43466) Protein kinase 3 , partia... 28 1.7
AV419126 28 1.7
TC11672 similar to UP|Q9NGW5 (Q9NGW5) Brakeless protein, partial... 28 2.3
TC10770 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pro... 28 2.3
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 40.0 bits (92), Expect = 6e-04
Identities = 28/83 (33%), Positives = 40/83 (47%), Gaps = 1/83 (1%)
Frame = +3
Query: 142 HDYGVVEDMPSTPVKVYNSEEE-EVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYR 200
HD + D P PV+ N EEE + E +D+ ED+ +DD+ D G D D+ +E
Sbjct: 198 HDPEIYPDGPPKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEE--E 371
Query: 201 DGGLEGLRSGGDARIVAVQGGDG 223
+G E V V+G DG
Sbjct: 372 EGSEE----------VEVEGKDG 410
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 37.7 bits (86), Expect = 0.003
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = +2
Query: 168 DDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGG 211
DD+ ++D+ EDD+ D D DE DE +GG+EG R GG
Sbjct: 38 DDDGEDDDGDEDDDDDAPGGGDDDDDEEDE-EEEGGVEGGRGGG 166
Score = 29.6 bits (65), Expect = 0.78
Identities = 17/48 (35%), Positives = 26/48 (53%)
Frame = +2
Query: 136 EKDVEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKD 183
E++ E D G + T V +E+EE +D E +EDE ++DN D
Sbjct: 209 EEEEEEEDLGTEYLVRRT---VAAAEDEEASSDFEPEEDEGDDNDNDD 343
>BP034655
Length = 517
Score = 35.4 bits (80), Expect = 0.014
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 141 AHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKD 183
A D+G+ +D + EEEE E ++E +E+E +EDD +D
Sbjct: 115 AADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEED 243
>TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, partial
(54%)
Length = 710
Score = 33.9 bits (76), Expect = 0.041
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Frame = -2
Query: 96 PNVLRHRADFARVLVRMNHPLLHCFTMAVDVGGTSFIILVEK--------------DVEA 141
PNVL HR F V+V P + DV G I+VE+ DVE
Sbjct: 430 PNVLVHRTRFDVVVV---DPEALVWVADGDVEGE---IVVERVVSGEVELRERGVGDVEL 269
Query: 142 HDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRD 201
HD G +D P E+E+ +ADD+ ++ ED+ +D +A ++ +
Sbjct: 268 HDVG-ADDEP---------EDEDGDADDDEGGEDEFEDEAED-AAAAALEASAAASAWAV 122
Query: 202 GGLEGLRSGGDARIVAVQ 219
G G R GG A I +VQ
Sbjct: 121 VGFFGRRDGG-AVISSVQ 71
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 33.1 bits (74), Expect = 0.071
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 160 SEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGGDAR 214
S+ E++E DDE +++ EDD+ D D DE DE G +SG AR
Sbjct: 755 SDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDE--EGEGKSKSKSGSKAR 913
Score = 27.7 bits (60), Expect = 3.0
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 159 NSEEEEVEADDEVQEDEAQEDDNKD 183
+ +E+E E DD+ +E+E +DD++D
Sbjct: 788 DGDEDEDEDDDDDEEEEDDDDDDED 862
>AV780096
Length = 564
Score = 32.7 bits (73), Expect = 0.092
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 2/141 (1%)
Frame = +1
Query: 159 NSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGGDARIVAV 218
+SEEEE E +E D+ +EDD + A + D DE GG + + + D +
Sbjct: 49 DSEEEEEEQQEEEVHDQIEEDDEELEAVARSASSD--DEPDESGGEDAVAADDDNQDDEG 222
Query: 219 QGGD-GISPEEVA-VKNNQPEKKESFGPNSNSNSLSLMAALNSVAEQKEQLRDIIDAGYS 276
D IS E A +K Q KK+ ++ + ++ A +N+ + + Y
Sbjct: 223 NAADPEISKREKARLKELQQLKKQKIQEILDAQNAAIDADMNNRGKGR--------LNYL 378
Query: 277 LEEIEGWMENLKADGILSKDK 297
L++ E + KAD S+ K
Sbjct: 379 LQQTELFAHLAKADQSSSQKK 441
>TC16667 similar to UP|O64594 (O64594) F17O7.4 (AT1G70420/F17O7_4), partial
(23%)
Length = 953
Score = 32.0 bits (71), Expect = 0.16
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Frame = +2
Query: 137 KDVEAHDYGVVEDMPS------TPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTI 190
+D +D+ +V+D T +K+ E EVE +++V+ED DD ++ S +
Sbjct: 110 RDSSDYDHELVDDSAKFELDFITKLKI----ENEVEDEEQVEED----DDEEEEFSFVLV 265
Query: 191 DPD----EIDEIYRDGGLEGLRSGGDARIVAVQGGD 222
+PD D+ + +G + + D +++ GGD
Sbjct: 266 NPDGSPISADDAFDNGQIRQIYPVFDQNLLSSDGGD 373
>TC9032 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Arabidopsis
thaliana;}, partial (50%)
Length = 502
Score = 31.2 bits (69), Expect = 0.27
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -3
Query: 160 SEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGG--DARIVA 217
S+++ D+ V+ED QED + G ++ + E D +EG+ G D +V
Sbjct: 341 SDQDNQLGDNHVEEDTQQEDSLE--GGNQVVEDTHVVEGIHDQAVEGIPEVGTQDMPLVV 168
Query: 218 VQGGDGISPEEVAVKNNQPEKKE 240
V+G + E +++P+ ++
Sbjct: 167 VEGMPQVGTHEKLQLSHEPDVRK 99
>AV416122
Length = 414
Score = 30.8 bits (68), Expect = 0.35
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 158 YNSEEEEVEADDEVQEDEAQEDDNKDLGSATTID 191
+ EEEE + +D+ +EDE ++D++ D +D
Sbjct: 294 FEGEEEEDDEEDKEEEDEEEDDEDDDSNGEAEVD 395
>TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (4%)
Length = 756
Score = 30.0 bits (66), Expect = 0.60
Identities = 11/30 (36%), Positives = 22/30 (72%)
Frame = -2
Query: 159 NSEEEEVEADDEVQEDEAQEDDNKDLGSAT 188
N EEEVEA++ +++E ++D+++D G +
Sbjct: 308 NEGEEEVEAEEGEEDEEEEDDEDEDPGEVS 219
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 29.6 bits (65), Expect = 0.78
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 143 DYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGS 186
D +VED+ ++++ EADD+ ED+ EDD+K+ G+
Sbjct: 207 DAPIVEDV---------KDDDKDEADDDEDEDDDDEDDDKEDGA 311
>BP029846
Length = 401
Score = 29.6 bits (65), Expect = 0.78
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 334 CNTPISRCHFSNQK 347
CNTPI CHFSN K
Sbjct: 155 CNTPIFGCHFSNSK 196
>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
{Arabidopsis thaliana;}, partial (8%)
Length = 937
Score = 29.6 bits (65), Expect = 0.78
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 148 EDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDD 180
+D P + VK +EEEE+ +++E +E +ED+
Sbjct: 812 DDQPLSQVKHAAAEEEELSSEEEGSSEEEEEDE 714
>BP038960
Length = 524
Score = 29.3 bits (64), Expect = 1.0
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 156 KVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLE 205
+V +SEEE + DD+ +E+E +E++++ P + I R+G E
Sbjct: 297 RVEDSEEEAADYDDDEEEEEEEEEEDEHADRVAVSGPGK-GPILREGFYE 443
>BP036655
Length = 556
Score = 28.9 bits (63), Expect = 1.3
Identities = 18/55 (32%), Positives = 32/55 (57%), Gaps = 3/55 (5%)
Frame = -3
Query: 156 KVYNSEEEEVEA---DDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGL 207
+V + EEE VE DD++ +DE+ DD + S T I+ ++ +E + G+E +
Sbjct: 374 EVVDEEEEVVEEWSDDDDINDDES--DDEVEEESETEIETEKEEEEEEECGVENV 216
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 28.5 bits (62), Expect = 1.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 135 VEKDVEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDL 184
VE++VE V E+ + EEEE E ++E E EA+E+D++ +
Sbjct: 205 VEEEVEEE---VEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEEEDDEPI 345
>TC8679 homologue to UP|Q43466 (Q43466) Protein kinase 3 , partial (70%)
Length = 972
Score = 28.5 bits (62), Expect = 1.7
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = +2
Query: 152 STPVKVYN---SEEEEVEADDEVQEDEAQEDD 180
S PVK + EE+E + ++EV+E+E +ED+
Sbjct: 608 SRPVKGFGWEGEEEDEEDVEEEVEEEEDEEDE 703
>AV419126
Length = 230
Score = 28.5 bits (62), Expect = 1.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Frame = -2
Query: 153 TPVKVYNSEEEEVEA---DDEVQEDEAQEDDNKD---------LGSATTIDPDEIDE 197
T V NS+ E+ E DDE + DE +ED +D +G+ +PD DE
Sbjct: 226 TSTLVGNSKREDGECEDEDDEEEHDEEEEDTERDDGTLQPALAVGAGLLAEPDAGDE 56
>TC11672 similar to UP|Q9NGW5 (Q9NGW5) Brakeless protein, partial (3%)
Length = 555
Score = 28.1 bits (61), Expect = 2.3
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -3
Query: 154 PVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTID 191
PV + +E++ E DEV EDE + D G T D
Sbjct: 142 PVWLQYDDEDDTEDADEVDEDEDADFDRDGCGVETLFD 29
>TC10770 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
(LIM domain interacting RING finger protein) (RING
finger LIM domain-binding protein) (R-LIM) (NY-REN-43
antigen), partial (4%)
Length = 481
Score = 28.1 bits (61), Expect = 2.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 148 EDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDD 180
E++PS P+ EE+ AD E+ EDE +EDD
Sbjct: 203 EELPSVPL-------EELLADLELGEDEDEEDD 280
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,870,359
Number of Sequences: 28460
Number of extensions: 74675
Number of successful extensions: 713
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of query: 347
length of database: 4,897,600
effective HSP length: 91
effective length of query: 256
effective length of database: 2,307,740
effective search space: 590781440
effective search space used: 590781440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0173b.2