TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0173a.1
         (217 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...    61  2e-10
TC18710                                                                51  1e-07
CB828334                                                               33  0.049
TC15311 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, p...    28  1.6
TC11228 similar to UP|AAP86780 (AAP86780) Mal d 1-associated pro...    27  2.1
TC9335 weakly similar to UP|Q9LL85 (Q9LL85) DNA-binding protein ...    26  4.6
TC19564 similar to UP|ERG_ARATH (O82653) GTP-binding protein ERG...    26  6.0
BP056144                                                               25  7.9

>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 35/106 (33%), Positives = 60/106 (56%)
 Frame = -3

Query: 103 TSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLVEGLNLKF 162
           +++EI E V +    +A G  G N +F+++  +I+K+D+    ++F++ G+L   LN   
Sbjct: 326 STDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDVNNAILDFFDHGELPVELNETL 147

Query: 163 IALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLS 208
           + LIPK    EA+  +RPIS    IY +I+K +  R    M  L+S
Sbjct: 146 VTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLKPDMVNLIS 9


>TC18710 
          Length = 843

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 30/97 (30%), Positives = 51/97 (51%)
 Frame = +2

Query: 121 GPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRP 180
           G  G N +F+++  D++KD +    + F E  ++   +N   + LIPK    E+++ +RP
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367

Query: 181 ISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFTKG 217
           IS    +Y +I+K    R    MP L+S  Q  F +G
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQG 478


>CB828334 
          Length = 541

 Score = 32.7 bits (73), Expect = 0.049
 Identities = 17/45 (37%), Positives = 25/45 (54%)
 Frame = +2

Query: 96  SMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDD 140
           S LE++FT EE+ ++  ACD N  +G     FI       ++KDD
Sbjct: 128 SKLEISFTEEEVNDLFEACDINEDMGMEFSEFIVLLCLVHLLKDD 262


>TC15311 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, partial
           (69%)
          Length = 966

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +3

Query: 181 ISLTGSIYILIAKD----LT*RFHMVMPYLLSWNQFS 213
           +++  +IYI + K     L+  F+ +MPYLL W+ F+
Sbjct: 663 VNIDENIYIPVTKAELAVLSSIFNFIMPYLLGWHTFA 773


>TC11228 similar to UP|AAP86780 (AAP86780) Mal d 1-associated protein,
           partial (59%)
          Length = 591

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 2   VERVQIRGEYVVTEIKDEVVKGG 24
           VE +Q   EY   ++ DEVVKGG
Sbjct: 228 VEVLQSNNEYTEEDVTDEVVKGG 296


>TC9335 weakly similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24,
           partial (28%)
          Length = 580

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 199 FHMVMPYLLSWNQF 212
           F+ ++PYLL WN F
Sbjct: 150 FNFILPYLLGWNAF 191


>TC19564 similar to UP|ERG_ARATH (O82653) GTP-binding protein ERG, partial
           (7%)
          Length = 566

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 32/106 (30%), Positives = 47/106 (44%)
 Frame = +3

Query: 79  CLQLTGDGF*KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIK 138
           CL LT     KV    K++LEV    E        C+G R+L      +  F  F+ ++ 
Sbjct: 186 CLTLTL----KVHEAYKTVLEVRVIIEN------HCNGERSLVH***WWQTFVPFYYLVA 335

Query: 139 DDMMKLFVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLT 184
                LF++FYEF K    + L F+ L     IL   S+  P+ +T
Sbjct: 336 YV*GILFIKFYEFKKGKREIPLYFLGLFTCNLIL-TCSIKMPLLMT 470


>BP056144 
          Length = 561

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 144 LFVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLT 184
           LF++FYEF K    + L F+ L     IL   S+  P+ +T
Sbjct: 133 LFIKFYEFKKGKREIPLYFLGLFTCNLIL-TCSIKMPLLMT 14


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.346    0.159    0.520 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,311,357
Number of Sequences: 28460
Number of extensions: 37887
Number of successful extensions: 314
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of query: 217
length of database: 4,897,600
effective HSP length: 87
effective length of query: 130
effective length of database: 2,421,580
effective search space: 314805400
effective search space used: 314805400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 53 (25.0 bits)