BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0171.3
(96 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP044035 48 2e-07
TC9194 similar to UP|Q9LYP1 (Q9LYP1) Membrane protein (AT5g07250... 27 0.45
BP073977 25 2.2
CB827424 25 2.2
TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), par... 25 2.2
TC14792 similar to UP|O73620 (O73620) Nuclear protein SDK2, part... 25 2.2
BP042843 25 2.9
BP043774 25 2.9
TC19419 weakly similar to UP|O18740 (O18740) Keratin, partial (3%) 25 2.9
TC17139 24 3.8
TC20081 similar to UP|AAQ73157 (AAQ73157) LysM domain-containing... 24 3.8
TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear phospho... 24 5.0
TC10124 24 5.0
AV416171 24 5.0
TC14498 24 5.0
BP065703 24 5.0
TC19518 similar to GB|CAC05466.1|9955527|ATT5E8 potassium transp... 24 5.0
TC17500 UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase t... 23 6.5
TC16998 23 8.5
AU252117 23 8.5
>BP044035
Length = 510
Score = 48.1 bits (113), Expect = 2e-07
Identities = 25/42 (59%), Positives = 32/42 (75%)
Frame = +2
Query: 3 KLPNVFSLRHLLVLSLALNVSFILRLLFEGEEGHDHCSCLRK 44
KL +F LRH LVLSLALNVS IL++L GE+ ++ C CL+K
Sbjct: 320 KLKTMFCLRHFLVLSLALNVSLILKMLCVGEQDNNWC-CLQK 442
>TC9194 similar to UP|Q9LYP1 (Q9LYP1) Membrane protein
(AT5g07250/T28J14_190), partial (78%)
Length = 1467
Score = 27.3 bits (59), Expect = 0.45
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +2
Query: 22 VSFILRLLFEGEEGHDHC 39
+S L +LF GE G+DHC
Sbjct: 1112 LSIALVMLFRGENGYDHC 1165
>BP073977
Length = 424
Score = 25.0 bits (53), Expect = 2.2
Identities = 20/70 (28%), Positives = 35/70 (49%)
Frame = +2
Query: 23 SFILRLLFEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANST 82
+FI +LLF E CL +++ + +++ N Q K ++SSS+S+ + S
Sbjct: 107 TFIKQLLFIEEL----YLCLHLQKQPIMVKSEHNKIKTGQKSKPVSSSLSSSSSASSESM 274
Query: 83 CKDHPGGRNR 92
K + G R R
Sbjct: 275 KKKYKGVRMR 304
>CB827424
Length = 563
Score = 25.0 bits (53), Expect = 2.2
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = -2
Query: 30 FEGEEGHDHCSCLR-------KERRAKIARADSNTETGEQSIKESRVA 70
F+GEE H+ + KER RA + E GEQ ES A
Sbjct: 148 FDGEERHEQREVVTQPTEGEAKERGTNRERASNEGEAGEQREDESNRA 5
>TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), partial (37%)
Length = 1779
Score = 25.0 bits (53), Expect = 2.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 30 FEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSL 78
F + G+ +CL +E + + TG S SR + SSS+S L
Sbjct: 573 FSTKSGYFSAACLTRECSCSLVNGSRSLSTGSSS--NSRSSSSSSSSLL 433
>TC14792 similar to UP|O73620 (O73620) Nuclear protein SDK2, partial (5%)
Length = 492
Score = 25.0 bits (53), Expect = 2.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 30 FEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSL 78
F + G+ +CL +E + + TG S SR + SSS+S L
Sbjct: 490 FSTKSGYFSAACLTRECSCSLVNGSRSLSTGSSS--NSRSSSSSSSSLL 350
>BP042843
Length = 452
Score = 24.6 bits (52), Expect = 2.9
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +1
Query: 46 RRAKIARADSNTETGEQSIKESRVAVSSSTSSLANS 81
RRA ++ A S+ E K + SSS+SSL S
Sbjct: 151 RRATLSAASSSVGENENDTKSRCYSSSSSSSSLLTS 258
>BP043774
Length = 439
Score = 24.6 bits (52), Expect = 2.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 48 AKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKDHP 87
A++ R T I ES + SSS+SSLA + P
Sbjct: 292 AQVVRGGDTDFTAAVGIHESPPSSSSSSSSLATGAAEQAP 411
>TC19419 weakly similar to UP|O18740 (O18740) Keratin, partial (3%)
Length = 500
Score = 24.6 bits (52), Expect = 2.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 31 EGEEGHDHCSCLRKERRAKIAR 52
E GH HC C R RA R
Sbjct: 404 EASSGHRHCRCRRGRSRASRRR 339
>TC17139
Length = 556
Score = 24.3 bits (51), Expect = 3.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 48 AKIARADSNTETGEQS--IKESRVAVSSSTSSLANSTCKDHP 87
A + R+ ++T + S I+ SRVA SS + S CK+ P
Sbjct: 464 APLPRSRNSTPSTNLSSAIQYSRVASRSSRKVFSKSLCKERP 339
>TC20081 similar to UP|AAQ73157 (AAQ73157) LysM domain-containing
receptor-like kinase 6, partial (9%)
Length = 506
Score = 24.3 bits (51), Expect = 3.8
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 33 EEGHDHCSCLRKERRAK 49
E+ H H SC++K+++ K
Sbjct: 398 EQKHSHLSCIKKKKKKK 348
>TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear
phosphoprotein-like protein, partial (5%)
Length = 789
Score = 23.9 bits (50), Expect = 5.0
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = -1
Query: 53 ADSNTETGEQSIKESRVAVSSSTSSLAN 80
ADS++ + E S + S + SSS+S L N
Sbjct: 108 ADSSSSSSEDSSESSSSSSSSSSSPLPN 25
>TC10124
Length = 805
Score = 23.9 bits (50), Expect = 5.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 41 CLRKERRAKIARADSNTETGEQSIKESR 68
C+R++RRA AR + + TG + KE +
Sbjct: 139 CVRRQRRAAAARVAAGS-TGSRRTKEEK 59
>AV416171
Length = 164
Score = 23.9 bits (50), Expect = 5.0
Identities = 10/34 (29%), Positives = 14/34 (40%)
Frame = -3
Query: 59 TGEQSIKESRVAVSSSTSSLANSTCKDHPGGRNR 92
+G + + R A C+ H GGRNR
Sbjct: 147 SGRRDRRRGRAAGVDGPGGHPRRRCRQHAGGRNR 46
>TC14498
Length = 1136
Score = 23.9 bits (50), Expect = 5.0
Identities = 17/82 (20%), Positives = 35/82 (41%)
Frame = +2
Query: 6 NVFSLRHLLVLSLALNVSFILRLLFEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIK 65
N L ++ + AL V F+ +++ C+C + N+ T Q+++
Sbjct: 794 NYICLLRVISVGSALCVVFMWKVVCMHVTYRS*CNCYHVLESVTLFYMQLNS*T--QNVQ 967
Query: 66 ESRVAVSSSTSSLANSTCKDHP 87
+ + ++ S N+ C DHP
Sbjct: 968 KCDLKLACQGMSRKNALCSDHP 1033
>BP065703
Length = 480
Score = 23.9 bits (50), Expect = 5.0
Identities = 9/35 (25%), Positives = 20/35 (56%)
Frame = -3
Query: 53 ADSNTETGEQSIKESRVAVSSSTSSLANSTCKDHP 87
A+ ++ETGE +I++ + + + + + C D P
Sbjct: 400 AELSSETGEAAIQKLEEEIRACKNMIKCTVCSDRP 296
>TC19518 similar to GB|CAC05466.1|9955527|ATT5E8 potassium transport
protein-like {Arabidopsis thaliana;} , partial (15%)
Length = 541
Score = 23.9 bits (50), Expect = 5.0
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +3
Query: 71 VSSSTSSLANSTCKDHP 87
+ +STS + NST DHP
Sbjct: 210 LEASTSEVVNSTTPDHP 260
>TC17500 UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase type 2C,
complete
Length = 1325
Score = 23.5 bits (49), Expect = 6.5
Identities = 14/38 (36%), Positives = 16/38 (41%)
Frame = +2
Query: 39 CSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTS 76
CSC R + N ETG S KE + S TS
Sbjct: 875 CSCHFPIYRGSVPSTLCNIETGSDSDKEKQQG*VSDTS 988
>TC16998
Length = 437
Score = 23.1 bits (48), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 15 VLSLALNVSFILRLLFEGEEGHDHCSCL 42
VLS AL + + FEG + HD C+
Sbjct: 301 VLSSALVIVMYVLQRFEGNQQHDFIFCI 384
>AU252117
Length = 350
Score = 23.1 bits (48), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (61%)
Frame = -1
Query: 3 KLPNVFSLRHLLVLSLALNVSFILRLLFE 31
K PN + +HL +++ NVS +L L+ E
Sbjct: 203 KDPN*WMSKHLFLITPTCNVSSVLNLI*E 117
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,688,706
Number of Sequences: 28460
Number of extensions: 18386
Number of successful extensions: 112
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of query: 96
length of database: 4,897,600
effective HSP length: 72
effective length of query: 24
effective length of database: 2,848,480
effective search space: 68363520
effective search space used: 68363520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)
Lotus: description of TM0171.3