BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0170.6
(1596 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427422 241 6e-64
BP055130 144 1e-34
BP054462 142 4e-34
BP046863 106 3e-23
BF177840 96 3e-20
AU089582 79 2e-19
BG662087 93 4e-19
AV410603 82 5e-16
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 52 3e-10
AV426985 61 1e-09
BP055633 58 1e-08
NP459451 NDX3 protein [Lotus japonicus] 49 6e-06
BP033405 45 7e-05
TC18698 45 9e-05
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 42 0.001
AV410570 40 0.002
BP042094 39 0.006
TC11563 38 0.011
BP085482 27 0.29
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ... 33 0.35
>AV427422
Length = 417
Score = 241 bits (615), Expect = 6e-64
Identities = 101/137 (73%), Positives = 127/137 (91%)
Frame = +1
Query: 1196 GLPRSRGFEAIFVVVDRLTKYSHFIPLKHPYTARSVAEIFAKEIIRLHGVPSSIISDRDP 1255
GLP+S+G+EA+ VVVDRL+K+SHF+PLKHPYTA+ +A+IF +E++RLHGVP SI+SDRDP
Sbjct: 7 GLPKSKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDP 186
Query: 1256 LFVSHFWKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCLETYLRCFAADQPKTWASWLHW 1315
LF+S+FWKE+F++QGT+ KMS+AYHPESDGQTE+VNRCLETYLRCF ADQPK+WA W+ W
Sbjct: 187 LFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPW 366
Query: 1316 AEYWFNTSYHSATQQTP 1332
AEYW+NTSYH +T QTP
Sbjct: 367 AEYWYNTSYHVSTGQTP 417
>BP055130
Length = 567
Score = 144 bits (362), Expect = 1e-34
Identities = 63/112 (56%), Positives = 80/112 (71%)
Frame = +2
Query: 1202 GFEAIFVVVDRLTKYSHFIPLKHPYTARSVAEIFAKEIIRLHGVPSSIISDRDPLFVSHF 1261
GF I VVVDRL+KY HF P + YT+ VAE F I++LHG+P +I+SDRD F S F
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358
Query: 1262 WKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCLETYLRCFAADQPKTWASWL 1313
WK F+L GT MSS+YHP++DGQTE +N+CLE YLRCF + P+ W S+L
Sbjct: 359 WKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
>BP054462
Length = 422
Score = 142 bits (358), Expect = 4e-34
Identities = 63/140 (45%), Positives = 104/140 (74%)
Frame = +1
Query: 1321 NTSYHSATQQTPFEAVYGRKPPVLTRWVLGETRVEAVEKDLQDRDEALRQLKQHLVAAQE 1380
N++Y+ + + +PF+A+YGR+PPVL + +++ AV RDE L L+ +L+ +Q+
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1381 RMRAQANSKRKHQEFEVGEWVFVKIRAHRQVSLANRVHAKLAARYFGPYPIIGRVGAVAY 1440
MR AN KR+ ++++G+ VF+K++ +R+ SLA +++ KL+ RY+GPYPI+ ++GAVAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 1441 RLKLPEGARIHPVFHISLLK 1460
RL+LP +R+HPVFH+SLLK
Sbjct: 361 RLELPAHSRVHPVFHVSLLK 420
>BP046863
Length = 580
Score = 106 bits (264), Expect = 3e-23
Identities = 49/108 (45%), Positives = 80/108 (73%)
Frame = +1
Query: 1354 VEAVEKDLQDRDEALRQLKQHLVAAQERMRAQANSKRKHQEFEVGEWVFVKIRAHRQVSL 1413
VEAV +++RD L +L+ +L+ AQ++MRAQAN R++ +++VG WVF+K++ ++ +L
Sbjct: 256 VEAVNMLIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQNL 435
Query: 1414 ANRVHAKLAARYFGPYPIIGRVGAVAYRLKLPEGARIHPVFHISLLKK 1461
A R + KL+ R++GP+ ++ RV VAY L L +R+HPVFH+SLL+K
Sbjct: 436 AQRKNQKLSPRFYGPFKVLERVVQVAY*LDLXSESRVHPVFHLSLLEK 579
>BF177840
Length = 410
Score = 96.3 bits (238), Expect = 3e-20
Identities = 43/95 (45%), Positives = 60/95 (62%)
Frame = +2
Query: 1247 SSIISDRDPLFVSHFWKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCLETYLRCFAADQP 1306
+SI+SDRD F+SHFW+ ++ GT+ S+ HP++DGQTE+VN+ L T LR
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 1307 KTWASWLHWAEYWFNTSYHSATQQTPFEAVYGRKP 1341
K W +WL E+ +N HS T+ +PFE VYG P
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNP 295
>AU089582
Length = 383
Score = 78.6 bits (192), Expect(2) = 2e-19
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +2
Query: 1228 ARSVAEIFAKEIIRLHGVPSSIISDRDPLFVSHFWKEMFRLQGTQFKMSSAYHPESDGQT 1287
A A+I+ EI+ LHGVP SIISDR F SHFW+ GT+ KMS+A+HP++DGQ+
Sbjct: 11 ASQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQS 190
Query: 1288 EIVNRCLETYLRCFAAD 1304
E + LE LR D
Sbjct: 191 ERTIQILEDMLRACVXD 241
Score = 35.4 bits (80), Expect(2) = 2e-19
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 1308 TWASWLHWAEYWFNTSYHSATQQTPFEAVYGRK 1340
+W +L E+ +N SY S+ PFEA+YGR+
Sbjct: 252 SWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRR 350
>BG662087
Length = 373
Score = 92.8 bits (229), Expect = 4e-19
Identities = 46/117 (39%), Positives = 68/117 (57%)
Frame = +1
Query: 684 W*MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTA 743
W M VDY LN D +P+P I++L+D S +D SGYHQ+++ D KTA
Sbjct: 22 WRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDKTA 201
Query: 744 FRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDH 800
F T +Y Y +PFGL NA +T+Q LM+ VF + R + V+ D+++V S ++H
Sbjct: 202 FMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>AV410603
Length = 162
Score = 82.4 bits (202), Expect = 5e-16
Identities = 36/53 (67%), Positives = 43/53 (80%)
Frame = +1
Query: 697 TVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTAFRTHEG 749
TV D FP+P ++ELLDEL G+ FFSKLDL+SGYHQ+ V+ ED HKT FRTH G
Sbjct: 4 TVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 52.4 bits (124), Expect(2) = 3e-10
Identities = 22/43 (51%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Frame = +3
Query: 1420 KLAARYFGPYPIIGRVGAVAYRLKL-PEGARIHPVFHISLLKK 1461
KL+ R+ GP+ ++ RVG+V+YRL L P+ + +HPVFH+S+L+K
Sbjct: 48 KLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRK 176
Score = 30.8 bits (68), Expect(2) = 3e-10
Identities = 12/31 (38%), Positives = 19/31 (60%)
Frame = +2
Query: 1500 ESISQVLVQWQGKTPEEATWEDLATIRSEFP 1530
+ + V V W+G + EEATWE +R ++P
Sbjct: 296 KDVGSVKVLWRGPSGEEATWEAEDIMREKYP 388
>AV426985
Length = 422
Score = 61.2 bits (147), Expect = 1e-09
Identities = 38/140 (27%), Positives = 70/140 (49%), Gaps = 1/140 (0%)
Frame = +1
Query: 346 HLSYPQLMERRQKGLCFKCGGPYHRNHVCPDKHLRLLILEEDGEELDES-KMLAMEVNED 404
++S ++ RR+K LC+ C + NH CP+K+L +L L ++ + D S + + +++D
Sbjct: 13 YISPAEMQLRREKNLCYWCDEKFSFNHKCPNKYLMMLQLTDENDSDDTSNQQVTTTISDD 192
Query: 405 EEETQGELSLMSLCELGMKTGGIPRTMKLRGTINGVPVVVLVDSGATHNFVDCFLVRRLG 464
SL ++ G G T++ G I + V VLVD G++ F+ + + L
Sbjct: 193 SPVEDHHFSLNAM--RGFTGVG---TIRFTGQIGNISVQVLVDGGSSDCFLQPHIAKFLQ 357
Query: 465 WEVVDTPRMTVKLGDGYKSQ 484
+ P V +G+G K +
Sbjct: 358 LPIESKPNFKVLVGNGQKME 417
>BP055633
Length = 528
Score = 57.8 bits (138), Expect = 1e-08
Identities = 24/73 (32%), Positives = 44/73 (59%)
Frame = -2
Query: 173 TWERFRDALLERYGGNGDGDVYEQLSELRQQGIVEEYITDFEYLTAQIPKLPEKQYQGYF 232
TW +F++A+LE++ + + L L+Q+G VEE++ FE + + E+ Y F
Sbjct: 521 TWTKFKEAMLEQFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIF 342
Query: 233 LHGLKEEIRGKVR 245
++GLKEEI +++
Sbjct: 341 VNGLKEEIAAEIK 303
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 791 LVYSKTWSDHMLHLERVLEVLQHHQLTANKKKC 823
LVYS T +H++HL +VL ++ H L + ++C
Sbjct: 104 LVYSLTMEEHVVHLTQVLXLMDHXDLKSW*EEC 6
>NP459451 NDX3 protein [Lotus japonicus]
Length = 665
Score = 48.9 bits (115), Expect = 6e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +3
Query: 1515 EEATWEDLATIRSEFPVFNLEDKVVSSEGSIVR 1547
+EATWED TI+S+FP FNLEDKV S G IVR
Sbjct: 492 DEATWEDNITIKSQFPSFNLEDKVDLSAGGIVR 590
>BP033405
Length = 508
Score = 45.4 bits (106), Expect = 7e-05
Identities = 23/35 (65%), Positives = 27/35 (76%), Gaps = 3/35 (8%)
Frame = -3
Query: 1551 NHNGLLAQDDPGPRVWKVYSRR---GQRESTDN*L 1582
N +G L QDD GP+VWKVYSRR G+RES+ N*L
Sbjct: 335 NQSGPLVQDDVGPKVWKVYSRREKGGKRESSAN*L 231
>TC18698
Length = 808
Score = 45.1 bits (105), Expect = 9e-05
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = -2
Query: 741 KTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDH 800
KT + + +Y Y VMP GL N +T+Q LM+++F + + V V+ +D++V S H
Sbjct: 801 KTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*FH 622
Query: 801 MLHLERVL 808
L R L
Sbjct: 621 RGDLSRDL 598
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 41.6 bits (96), Expect = 0.001
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +2
Query: 1270 GTQFKMSSAYHPESDGQTEIVNRCLETYLRCFAADQPKTWASWLHWAEYWFNTSYHSATQ 1329
G Q + SS HP+++GQTE N+ + ++ + W L + +NT S+ +
Sbjct: 62 GIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPIVLWSYNTMPQSSIK 241
Query: 1330 QTPFEAVYG 1338
+TPF YG
Sbjct: 242 ETPF*LTYG 268
>AV410570
Length = 412
Score = 40.4 bits (93), Expect = 0.002
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 347 LSYPQLMERRQKGLCFKCGGPYHRNHVCPDKHLRL 381
+S ++ RR+KGLCF C Y NH CP+K L L
Sbjct: 89 ISPAEMQLRREKGLCFTCDEKYSWNHKCPNKQLML 193
>BP042094
Length = 409
Score = 38.9 bits (89), Expect = 0.006
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = -1
Query: 1518 TWEDLATIRSEFPVFNLEDKVVSSEGSIVR-----KDNNHNGLLAQDDPGPRVWKVYSRR 1572
+W D ++ +FP F+LEDK + G R N +L Q P W VYSRR
Sbjct: 406 SWVDEPALKCQFPSFSLEDKAAAIGGXSDRIPGPVDYENQGEVLGQSSKRPTTWLVYSRR 227
>TC11563
Length = 470
Score = 38.1 bits (87), Expect = 0.011
Identities = 20/48 (41%), Positives = 29/48 (59%), Gaps = 1/48 (2%)
Frame = +2
Query: 1502 ISQVLVQWQGKTPEEATWEDLATIRSEFPVFNLEDKVV-SSEGSIVRK 1548
+ Q+L+QW+G TWE L+ I+ FP F L DKV EG+++ K
Sbjct: 8 VPQLLIQWEGAA--NCTWELLSYIQDSFPQFALADKVTFYGEGNVMIK 145
>BP085482
Length = 365
Score = 26.6 bits (57), Expect(2) = 0.29
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -1
Query: 1531 VFNLEDKVVSSEGSIVR 1547
VFNLEDKV S G IVR
Sbjct: 365 VFNLEDKVDLSAGGIVR 315
Score = 25.4 bits (54), Expect(2) = 0.29
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = -3
Query: 1565 VWKVYSRRGQRESTDN*LSS*Q 1586
+W VYSRRGQ T N L+ *+
Sbjct: 249 IWIVYSRRGQVGITSNYLTE*R 184
>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
[imported] - Agrobacterium tumefaciens
(strain C58, Dupont) {Agrobacterium tumefaciens;},
partial (6%)
Length = 561
Score = 33.1 bits (74), Expect = 0.35
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = -2
Query: 435 GTINGVPVVVLVDSGATHNFVD 456
G++N P+ +L DSGATH+F+D
Sbjct: 80 GSVNCKPLTILFDSGATHSFID 15
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,360,975
Number of Sequences: 28460
Number of extensions: 356277
Number of successful extensions: 1753
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of query: 1596
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1493
effective length of database: 1,966,220
effective search space: 2935566460
effective search space used: 2935566460
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0170.6