TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0162a.11
         (401 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13752 similar to GB|CAB63803.1|6624618|ATH251868 heat shock fa...   145  1e-35
TC19060 similar to UP|Q9SXK9 (Q9SXK9) Heat shock factor, partial...   143  4e-35
TC14009 similar to UP|HSF5_ARATH (Q9S7U5) Heat shock factor prot...   129  1e-30
AV415736                                                              105  1e-23
TC13429 similar to UP|O23259 (O23259) Heat shock transcription f...    46  1e-05
TC17313 similar to UP|Q9FH68 (Q9FH68) Genomic DNA, chromosome 5,...    32  0.14
TC9825 similar to UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), partial (...    30  0.71
TC14266 homologue to PIR|C86216|C86216 protein T23G18.6 [importe...    30  0.93
BP075094                                                               30  0.93
TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partia...    29  1.6
AV765951                                                               29  1.6
AI967308                                                               28  2.1
TC14746 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1 i...    28  2.7
TC18606 similar to UP|AAR89453 (AAR89453) Zeta-sarcoglycan, part...    28  2.7
TC19651 similar to UP|Q7QEB6 (Q7QEB6) AgCP7318 (Fragment), parti...    27  6.0
TC14432                                                                27  7.9

>TC13752 similar to GB|CAB63803.1|6624618|ATH251868 heat shock factor 7
           {Arabidopsis thaliana;} , partial (36%)
          Length = 501

 Score =  145 bits (366), Expect = 1e-35
 Identities = 63/100 (63%), Positives = 83/100 (83%), Gaps = 1/100 (1%)
 Frame = +3

Query: 6   NSSSSLP-PFLAKTYEMVDDPSSDRIVSWSATNRSFVVWNPPDFARELLPRFFKHNNFSS 64
           +S  ++P PFL KTY++VDDPS D ++SW+    SF+VW P +FAR+LLP++FKHNNFSS
Sbjct: 51  DSQRAIPTPFLTKTYQLVDDPSVDDLISWNKDGNSFIVWRPAEFARDLLPKYFKHNNFSS 230

Query: 65  FIRQLNTYGFRKVDPEQWEFANDGFVRGEPHLMKNIHRRK 104
           F+RQLNTYGFRKV P++WEFANDGF RG+  L+++I RRK
Sbjct: 231 FVRQLNTYGFRKVVPDRWEFANDGFRRGQKDLLRDIQRRK 350


>TC19060 similar to UP|Q9SXK9 (Q9SXK9) Heat shock factor, partial (58%)
          Length = 660

 Score =  143 bits (361), Expect = 4e-35
 Identities = 68/131 (51%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
 Frame = +1

Query: 3   EAQNSSSSLP-PFLAKTYEMVDDPSSDRIVSWSATNRSFVVWNPPDFARELLPRFFKHNN 61
           E + S  S+P PFL KTYEMVDDP+++ ++SWS +  +FVVW   DFA++LLP +FKHNN
Sbjct: 10  EEKMSQRSVPAPFLTKTYEMVDDPATEDVISWSESGNTFVVWKHADFAKDLLPSYFKHNN 189

Query: 62  FSSFIRQLNTYGFRKVDPEQWEFANDGFVRGEPHLMKNIHRRKPVHSHSMQNLQAHAPLG 121
           FSSF+RQLNTYGFRK+ P++WEFAN+ F RG+  L+  I RRK V +            G
Sbjct: 190 FSSFVRQLNTYGFRKIVPDKWEFANENFKRGKRELLSEIKRRKTVVAQPSAQAPEVGKSG 369

Query: 122 ESERKSLNDEI 132
            S   S  DE+
Sbjct: 370 NSTSNSGGDEV 402


>TC14009 similar to UP|HSF5_ARATH (Q9S7U5) Heat shock factor protein 5 (HSF
           5) (Heat shock transcription factor 5) (HSTF 5), partial
           (27%)
          Length = 406

 Score =  129 bits (323), Expect = 1e-30
 Identities = 62/111 (55%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
 Frame = +1

Query: 3   EAQNSSSSLPPFLAKTYEMVDDPSSDRIVSWSA-TNRSFVVWNPPDFARELLPRFFKHNN 61
           E  + SSS+ PFL K Y+MV+D S+D I+SW+  +  +FV+ +   F+  LLP +FKHNN
Sbjct: 52  ENASGSSSVAPFLNKCYDMVEDDSTDSIISWTEPSGHTFVISDITAFSVTLLPTYFKHNN 231

Query: 62  FSSFIRQLNTYGFRKVDPEQWEFANDGFVRGEPHLMKNIHRRKPVHSHSMQ 112
           F+SFIRQLN YGFRKVD ++WEFAN+ FVRG+ HL+KNI RRK  H    Q
Sbjct: 232 FASFIRQLNIYGFRKVDTDRWEFANENFVRGQKHLLKNIRRRKHPHVTDQQ 384


>AV415736 
          Length = 214

 Score =  105 bits (263), Expect = 1e-23
 Identities = 44/70 (62%), Positives = 58/70 (82%)
 Frame = +2

Query: 24 DPSSDRIVSWSATNRSFVVWNPPDFARELLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWE 83
          D S D ++SW+    +F+VWNP  FAR+LLP++FKHNNFSSF+RQLNTYGFRKV P++WE
Sbjct: 2  DQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVIPDRWE 181

Query: 84 FANDGFVRGE 93
          F+N+ F +GE
Sbjct: 182FSNEFFRKGE 211


>TC13429 similar to UP|O23259 (O23259) Heat shock transcription factor
           homolog (Heat shock transcription factor like protein),
           partial (5%)
          Length = 533

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 29/75 (38%), Positives = 40/75 (52%)
 Frame = +1

Query: 302 SSGIDMNSEPTAAAVLEPVASKEQPAGKAAATGVNDVFWEQFLTEDPGASEAQEVQSERK 361
           SS  ++ +E T  A   P +++  PA   A   VNDVFWEQFLTE PG S+ +E  S  +
Sbjct: 133 SSNQNVANEVTXLAAPTPSSNQVSPA---APDRVNDVFWEQFLTERPGCSDNEEAISNYR 303

Query: 362 EYNGRKSEGKPTDHG 376
                + E   + HG
Sbjct: 304 ANPYDEQEEGRSVHG 348


>TC17313 similar to UP|Q9FH68 (Q9FH68) Genomic DNA, chromosome 5, TAC
           clone:K16E1, partial (73%)
          Length = 959

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 102 RRKPVHSHS-MQNLQAHAPLGESERKSLNDEIEKLKHNKERLLMELQRHQHEWQPYEIQL 160
           ++K  H  S ++ L++   +  ++ K+L  E+E LK   E  LME  R   + Q    QL
Sbjct: 522 QKKSWHLKSKVKKLESECEVKGNKAKTLETEVEALKKQSEGFLMEYDRLLEDNQNLRNQL 701

Query: 161 NCLKEQLEKLEQKQ 174
           N +      L+ K+
Sbjct: 702 NTIDHSTLNLDNKK 743


>TC9825 similar to UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), partial (44%)
          Length = 848

 Score = 30.0 bits (66), Expect = 0.71
 Identities = 23/86 (26%), Positives = 39/86 (44%), Gaps = 1/86 (1%)
 Frame = +2

Query: 181 VSQVLHKPVIALNLLPPTETMDRKRRLPGGGYFNDEASIEDAVDTSQMLPRENAEGASVL 240
           V+ V  K    ++++PP +  D+K +  GG     E   +D  D   +     A  A V+
Sbjct: 95  VAYVTEKTKRNVDVVPPKKEEDKKEKEGGGEKKEKEKDNKDKKDEGAVA----AAAAKVV 262

Query: 241 TLN-MERLDQLESSMLFWETIAHESG 265
            +N ME    L++  ++W    HE G
Sbjct: 263 EVNQMEYQYPLQTPPMYWYDGQHEQG 340


>TC14266 homologue to PIR|C86216|C86216 protein T23G18.6 [imported] -
            Arabidopsis thaliana {Arabidopsis thaliana;}, complete
          Length = 1607

 Score = 29.6 bits (65), Expect = 0.93
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 256  FWETIAHESGETFIHIHTNMDVDESTSCADSLSISC 291
            FW+ IAH      +H++  + + +  SCA ++  SC
Sbjct: 1291 FWQPIAHAHVSFLLHVYGEIVIYQGQSCAFAM*FSC 1398


>BP075094 
          Length = 521

 Score = 29.6 bits (65), Expect = 0.93
 Identities = 15/54 (27%), Positives = 26/54 (47%)
 Frame = -3

Query: 279 ESTSCADSLSISCPQLEVEVRSKSSGIDMNSEPTAAAVLEPVASKEQPAGKAAA 332
           E TSC   L   C   + +++   +G       T+ + L+P+AS E+P G   +
Sbjct: 270 ECTSCGKRLHSGCVAFKSQLQLLDAGGVCCKNCTSNSGLQPIASNEKPTGSGTS 109


>TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partial (6%)
          Length = 520

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 13/41 (31%), Positives = 19/41 (45%)
 Frame = +2

Query: 77  VDPEQWEFANDGFVRGEPHLMKNIHRRKPVHSHSMQNLQAH 117
           +DP     A DG++RG+    +     +P HSHS      H
Sbjct: 26  LDPNGLSDAEDGWIRGDQSHKEIRRGNRPAHSHSCSYSSCH 148


>AV765951 
          Length = 297

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 17/52 (32%), Positives = 26/52 (49%)
 Frame = -2

Query: 338 VFWEQFLTEDPGASEAQEVQSERKEYNGRKSEGKPTDHGRFWWNARNANNLP 389
           VFWEQFL++ PG S  ++  S  +     + +   + HG F  N +    LP
Sbjct: 296 VFWEQFLSKKPGCSAKEKAISIFRANPSDEQKKGRSVHGIF-KNIKGMGQLP 144


>AI967308 
          Length = 443

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 17/49 (34%), Positives = 26/49 (52%)
 Frame = +1

Query: 129 NDEIEKLKHNKERLLMELQRHQHEWQPYEIQLNCLKEQLEKLEQKQQKM 177
           NDEI  LK N E  + EL+    E +  + QLN    ++ + E K++ M
Sbjct: 214 NDEIALLKCNLEEKVTELESMSKENENLKQQLNEAVSKVSEAETKEEGM 360


>TC14746 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1 interacting
           partner 1 {Arabidopsis thaliana;}, partial (62%)
          Length = 719

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 89  FVRGEPHLMKNIHRRKPVHSHSMQNLQAHA 118
           F+R  P++++ I   KPVH  S+QNL+  A
Sbjct: 650 FIRNNPNVLRRI---KPVHEISLQNLKIGA 570


>TC18606 similar to UP|AAR89453 (AAR89453) Zeta-sarcoglycan, partial (6%)
          Length = 319

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 128 LNDEIEKLKHNKERLLMELQRHQHEWQPYEI 158
           L+    K K  K+ LL+ L RHQ  WQ Y I
Sbjct: 99  LHSSHPKQKQKKKILLLLLLRHQFGWQHYSI 7


>TC19651 similar to UP|Q7QEB6 (Q7QEB6) AgCP7318 (Fragment), partial (8%)
          Length = 635

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 20/77 (25%), Positives = 36/77 (45%), Gaps = 2/77 (2%)
 Frame = -1

Query: 145 ELQRHQHEWQPYEIQLNCLKEQLEKLEQKQQKMV--SSVSQVLHKPVIALNLLPPTETMD 202
           E+ R    W     + N  +  +E+L+ +++++V    VS+  H+P+             
Sbjct: 419 EILRFLRRWFSVVDRANRGERTVEELKTRRRRVVVVDVVSKFCHRPL------------- 279

Query: 203 RKRRLPGGGYFNDEASI 219
           RK R  GGG +ND A +
Sbjct: 278 RKERRGGGGGWNDTAVV 228


>TC14432 
          Length = 623

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 13/43 (30%), Positives = 22/43 (50%)
 Frame = -1

Query: 101 HRRKPVHSHSMQNLQAHAPLGESERKSLNDEIEKLKHNKERLL 143
           HRR PV +   Q L   +  G   R+    +++  KH ++R+L
Sbjct: 422 HRRNPVPAGISQKLTGASKSGRRRRRRNPLKLDSQKHKQKRVL 294


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.312    0.128    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,829,570
Number of Sequences: 28460
Number of extensions: 92441
Number of successful extensions: 422
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of query: 401
length of database: 4,897,600
effective HSP length: 92
effective length of query: 309
effective length of database: 2,279,280
effective search space: 704297520
effective search space used: 704297520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)