BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0158.4
(1003 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI419427 445 e-125
BP055222 271 4e-73
TC12757 246 1e-65
BP064526 216 1e-56
TC15234 similar to PIR|T47827|T47827 squamosa promoter binding p... 200 8e-52
BP033863 137 6e-33
TC10817 similar to UP|O80717 (O80717) At2g47080 protein, partial... 134 5e-32
CN825561 123 1e-28
TC19403 similar to UP|O82651 (O82651) Squamosa-promoter binding ... 95 6e-20
TC11303 homologue to UP|O82651 (O82651) Squamosa-promoter bindin... 88 6e-18
AU088772 83 2e-16
TC16560 similar to UP|Q9S849 (Q9S849) Squamosa promoter binding ... 74 2e-13
BP054628 72 4e-13
AV775831 66 3e-11
BP055789 52 6e-07
AI967511 49 3e-06
TC9156 similar to UP|Q9SMW6 (Q9SMW6) Spl1-Related2 protein (Frag... 47 2e-05
TC18987 similar to UP|Q8GYT1 (Q8GYT1) OBP33pep like protein, par... 32 0.50
TC8144 similar to UP|LB38_ARATH (Q9SN23) LOB domain protein 38, ... 32 0.65
BG662033 31 0.85
>BI419427
Length = 661
Score = 445 bits (1145), Expect = e-125
Identities = 220/220 (100%), Positives = 220/220 (100%)
Frame = +1
Query: 656 SFFPFIVAEEDVCSDICGLEPLLELSETDPDIEGTGKIKAKSQAMDFIHEIGWLLHGSQL 715
SFFPFIVAEEDVCSDICGLEPLLELSETDPDIEGTGKIKAKSQAMDFIHEIGWLLHGSQL
Sbjct: 1 SFFPFIVAEEDVCSDICGLEPLLELSETDPDIEGTGKIKAKSQAMDFIHEIGWLLHGSQL 180
Query: 716 KSRMVHLSSSTDLFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLEGTVSTGDHPSLDLALS 775
KSRMVHLSSSTDLFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLEGTVSTGDHPSLDLALS
Sbjct: 181 KSRMVHLSSSTDLFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLEGTVSTGDHPSLDLALS 360
Query: 776 EMGLLHRAVRRNSKQLVELLLTYVPENISNEVRPEGKALVEGEKQSFLFRPDAAGPAGLT 835
EMGLLHRAVRRNSKQLVELLLTYVPENISNEVRPEGKALVEGEKQSFLFRPDAAGPAGLT
Sbjct: 361 EMGLLHRAVRRNSKQLVELLLTYVPENISNEVRPEGKALVEGEKQSFLFRPDAAGPAGLT 540
Query: 836 PLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGST 875
PLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGST
Sbjct: 541 PLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGST 660
>BP055222
Length = 536
Score = 271 bits (693), Expect = 4e-73
Identities = 132/132 (100%), Positives = 132/132 (100%)
Frame = -1
Query: 872 TGSTPEDYARLRGHYTYIHLVQKKINKRQGAPHVVVEIPTNLTENDTNQKQNESSTTFEI 931
TGSTPEDYARLRGHYTYIHLVQKKINKRQGAPHVVVEIPTNLTENDTNQKQNESSTTFEI
Sbjct: 536 TGSTPEDYARLRGHYTYIHLVQKKINKRQGAPHVVVEIPTNLTENDTNQKQNESSTTFEI 357
Query: 932 AKTRDQGHCKLCDIKLSCRTAVGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYMFR 991
AKTRDQGHCKLCDIKLSCRTAVGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYMFR
Sbjct: 356 AKTRDQGHCKLCDIKLSCRTAVGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYMFR 177
Query: 992 PFSWESLDFGTS 1003
PFSWESLDFGTS
Sbjct: 176 PFSWESLDFGTS 141
>TC12757
Length = 710
Score = 246 bits (628), Expect = 1e-65
Identities = 124/132 (93%), Positives = 127/132 (95%)
Frame = +3
Query: 250 ILSNMNSDRSDQTTDQDLLTHLLRSLASRNGEQGGNNLSNILREPENLLREGGSSRESEM 309
+L + +DRSDQTTDQDLLTHLLRSLASRN EQGGNNLSNI REPENLLREGGSSRESEM
Sbjct: 315 LLRHYQADRSDQTTDQDLLTHLLRSLASRNSEQGGNNLSNIYREPENLLREGGSSRESEM 494
Query: 310 VPTLLSNGSQGSPTDIRQHQTVSMNKMQQEVVHAHDARATDQQLMSYIKPSISNTPPAYA 369
VPTLLSNGSQGSPTDIRQHQTVSMNKMQQEVVHAHDARATDQQLMSYIKPSISNTPPAYA
Sbjct: 495 VPTLLSNGSQGSPTDIRQHQTVSMNKMQQEVVHAHDARATDQQLMSYIKPSISNTPPAYA 674
Query: 370 EARDSTAGQIKM 381
EARDSTAGQIKM
Sbjct: 675 EARDSTAGQIKM 710
>BP064526
Length = 533
Score = 216 bits (551), Expect = 1e-56
Identities = 108/157 (68%), Positives = 128/157 (80%), Gaps = 1/157 (0%)
Frame = +1
Query: 146 RAVCQVEDCCADLSRAKDYHRRHKVCEMHSKATRALVGNAMQRFCQQCSRFHMLQEFDEG 205
RAVCQV+DC ADLS AKDYHRRHKVCE HSKAT ALVGN MQRFCQQCSRFH+LQEFDEG
Sbjct: 43 RAVCQVQDCRADLSSAKDYHRRHKVCEGHSKATMALVGNVMQRFCQQCSRFHVLQEFDEG 222
Query: 206 KRSCRRRLAGHN-KRRRKTNNEAVPNGNPLNDDQTSSYLLISLLKILSNMNSDRSDQTTD 264
KRSCRRRLAGHN +RRRKT+ +A NG LND++ SSYLL SL++ILSNM+S+ SD T +
Sbjct: 223 KRSCRRRLAGHNRRRRRKTHPDAEVNGEALNDERGSSYLLTSLIRILSNMHSNSSDHTRN 402
Query: 265 QDLLTHLLRSLASRNGEQGGNNLSNILREPENLLREG 301
D+L+HLLR+LAS G G +L++IL + L+ G
Sbjct: 403 NDILSHLLRNLASLAGTINGRSLASILEGSQGLVNAG 513
>TC15234 similar to PIR|T47827|T47827 squamosa promoter binding protein-like
12 [imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (11%)
Length = 737
Score = 200 bits (509), Expect = 8e-52
Identities = 109/189 (57%), Positives = 131/189 (68%), Gaps = 8/189 (4%)
Frame = +2
Query: 822 FLFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYAR 881
FLFRPDA GP GLTPLH+AA GSE+VLDALT+DP MVGIEAW++ARD+TG TP DYA
Sbjct: 17 FLFRPDAVGPGGLTPLHVAASMSGSENVLDALTDDPGMVGIEAWESARDNTGLTPNDYAS 196
Query: 882 LRGHYTYIHLVQKKINKRQGAPHVVVEIPTNLTENDTNQKQNE--------SSTTFEIAK 933
LRGHYTYI LVQKK +K+ G V++IP L ++ T QKQ+E S T +I
Sbjct: 197 LRGHYTYIQLVQKKTSKK-GGRQCVLDIPGTLVDSYTKQKQSERHGTSKVSSLQTVKIET 373
Query: 934 TRDQGHCKLCDIKLSCRTAVGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYMFRPF 993
T C LC K + +LVY+P MLSMV +AAVCVCVAL FKS P V YM +PF
Sbjct: 374 TTVPLQCGLCKHK-QAYGGMRPALVYRPVMLSMVTIAAVCVCVALFFKSLPRV-YMTQPF 547
Query: 994 SWESLDFGT 1002
+WESL +G+
Sbjct: 548 NWESLKYGS 574
>BP033863
Length = 422
Score = 137 bits (346), Expect = 6e-33
Identities = 63/63 (100%), Positives = 63/63 (100%)
Frame = +2
Query: 1 MEARFGAEAYHYYGVGASSDMRGMGKRSAEWDLNNWRWDGDLFIASRVNPVQEDGVGQQL 60
MEARFGAEAYHYYGVGASSDMRGMGKRSAEWDLNNWRWDGDLFIASRVNPVQEDGVGQQL
Sbjct: 233 MEARFGAEAYHYYGVGASSDMRGMGKRSAEWDLNNWRWDGDLFIASRVNPVQEDGVGQQL 412
Query: 61 FPL 63
FPL
Sbjct: 413 FPL 421
>TC10817 similar to UP|O80717 (O80717) At2g47080 protein, partial (13%)
Length = 648
Score = 134 bits (338), Expect = 5e-32
Identities = 71/95 (74%), Positives = 78/95 (81%), Gaps = 4/95 (4%)
Frame = +2
Query: 913 LTENDTNQKQNES-STTFEIAKTRD---QGHCKLCDIKLSCRTAVGRSLVYKPAMLSMVA 968
LT + N+ Q+E ST+FEI K Q CKLCD+KLSCRTA GRSLVYKPAMLSMVA
Sbjct: 2 LTRFNANEXQDELLSTSFEIGKAEVKSVQKLCKLCDLKLSCRTAAGRSLVYKPAMLSMVA 181
Query: 969 VAAVCVCVALLFKSSPEVLYMFRPFSWESLDFGTS 1003
VAAVCVCVALLFKSSPEVLY+FRPF WESL+FGTS
Sbjct: 182 VAAVCVCVALLFKSSPEVLYIFRPFRWESLEFGTS 286
>CN825561
Length = 646
Score = 123 bits (309), Expect = 1e-28
Identities = 58/86 (67%), Positives = 65/86 (75%)
Frame = +2
Query: 137 RVAGGGASNRAVCQVEDCCADLSRAKDYHRRHKVCEMHSKATRALVGNAMQRFCQQCSRF 196
R + GG+S CQVE+C ADLS AK YHRRHKVCE H+KA + QRFCQQCSRF
Sbjct: 173 RGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKVCEYHAKAHAVHIAGMHQRFCQQCSRF 352
Query: 197 HMLQEFDEGKRSCRRRLAGHNKRRRK 222
H L EFD+ KRSCRRRLAGHN+RRRK
Sbjct: 353 HELSEFDDSKRSCRRRLAGHNERRRK 430
>TC19403 similar to UP|O82651 (O82651) Squamosa-promoter binding
protein-like 1, partial (5%)
Length = 499
Score = 94.7 bits (234), Expect = 6e-20
Identities = 43/44 (97%), Positives = 44/44 (99%)
Frame = +3
Query: 498 VLTIYLRQAEAVWEEICYDLTSSLGRLLDVSDDTFWRTGWVHIR 541
VLTIYLRQAEAVWEEICYDLTSSLGRLLDVSDDTFWRTGWVHI+
Sbjct: 3 VLTIYLRQAEAVWEEICYDLTSSLGRLLDVSDDTFWRTGWVHIQ 134
>TC11303 homologue to UP|O82651 (O82651) Squamosa-promoter binding
protein-like 1, partial (3%)
Length = 512
Score = 88.2 bits (217), Expect = 6e-18
Identities = 54/135 (40%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Frame = -3
Query: 23 GMGKRSAEWDLNNWRWDGDLFIASRVNPVQEDGVGQQLFPLVSGIPASNSSSSCSEEVDL 82
G GKRS EWDLN+W+WDGDLF A +N V D G Q FP PA ++ S + +
Sbjct: 402 GNGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRGGQFFPPAPEFPAKTANLSSNLSASV 223
Query: 83 RDPMGSREGERKRRVIVLEDDGLNEEG----GTLSLKLGGHAADREVASWDGGNGKKSRV 138
G RE E++RR + + +G +EG G+L+L LGG V + GKK+RV
Sbjct: 222 NSGEGKRELEKRRRGVTVRGEGEGDEGNDGNGSLNLNLGGQVYPVMVEG-EEKIGKKTRV 46
Query: 139 ----AGGGASNRAVC 149
A RAVC
Sbjct: 45 IETTAYATTFKRAVC 1
>AU088772
Length = 422
Score = 82.8 bits (203), Expect = 2e-16
Identities = 41/73 (56%), Positives = 47/73 (64%)
Frame = +1
Query: 134 KKSRVAGGGASNRAVCQVEDCCADLSRAKDYHRRHKVCEMHSKATRALVGNAMQRFCQQC 193
K+ AGG A + CQVE C ADLS AK HRRHKVCE H+KA L+ QRFC QC
Sbjct: 178 KRGSKAGGSAVPPS-CQVEGCYADLSGAKAXHRRHKVCEHHAKAPSXLLSEQQQRFCXQC 354
Query: 194 SRFHMLQEFDEGK 206
RFH L +FD+ K
Sbjct: 355 XRFHELSQFDDPK 393
>TC16560 similar to UP|Q9S849 (Q9S849) Squamosa promoter binding
protein-like 8, partial (18%)
Length = 622
Score = 73.6 bits (179), Expect = 2e-13
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = +2
Query: 187 QRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKT 223
QRFCQQCSRFH+L EFD GKRSCR+RLA HN+RRRKT
Sbjct: 29 QRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKT 139
>BP054628
Length = 508
Score = 72.0 bits (175), Expect = 4e-13
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = -2
Query: 963 MLSMVAVAAVCVCVALLFKSSPEVLYMFRPFSWESLDFGT 1002
MLSMVA+AAVCVCVALLFKSSP V Y+F PFSWESL++G+
Sbjct: 507 MLSMVAIAAVCVCVALLFKSSPRVYYVFHPFSWESLEYGS 388
>AV775831
Length = 475
Score = 65.9 bits (159), Expect = 3e-11
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = -3
Query: 126 ASWDGGNGKKSRVAGGGASNRAVCQVEDCCADLSRAKDYHRRHKVCEMHSKATRALVGNA 185
+S+ G+ K++R A A+ A C V+ C +DLS +DYHRRHKVCE+HS+ +
Sbjct: 473 SSFPSGSSKRAR-AVHYATLTAFCLVDGCSSDLSNCRDYHRRHKVCELHSQTPEVTIAGM 297
Query: 186 MQRFCQQCSR--FHM 198
Q C CSR FHM
Sbjct: 296 KQGLCLPCSRSSFHM 252
>BP055789
Length = 455
Score = 51.6 bits (122), Expect = 6e-07
Identities = 30/88 (34%), Positives = 44/88 (49%), Gaps = 15/88 (17%)
Frame = +3
Query: 103 DGLNEEGGTLSLKLGGHAADREVASWD---------------GGNGKKSRVAGGGASNRA 147
+G E T+ L+LG + E ++ D G+ K+SR+ G S
Sbjct: 198 EGQKNEEATVDLRLGEGSDSVEKSAPDTPKDPEESKAMSSSPSGSSKRSRLHNG--SLNM 371
Query: 148 VCQVEDCCADLSRAKDYHRRHKVCEMHS 175
C V+ C +DLS ++YHRRH+VCE HS
Sbjct: 372 ACSVDGCTSDLSDCREYHRRHRVCEKHS 455
>AI967511
Length = 375
Score = 49.3 bits (116), Expect = 3e-06
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +2
Query: 728 LFPLKRFKWLMEFSMDHDWCAVVKK 752
LFPL RFKWLMEF MD DWCAV KK
Sbjct: 62 LFPLIRFKWLMEFPMDCDWCAVAKK 136
>TC9156 similar to UP|Q9SMW6 (Q9SMW6) Spl1-Related2 protein (Fragment),
partial (3%)
Length = 850
Score = 47.0 bits (110), Expect = 2e-05
Identities = 22/45 (48%), Positives = 33/45 (72%)
Frame = +2
Query: 958 VYKPAMLSMVAVAAVCVCVALLFKSSPEVLYMFRPFSWESLDFGT 1002
+++P + S++AVAAVCVCV + F+ +P V PF WE+LD+GT
Sbjct: 11 LHRPFIHSILAVAAVCVCVCVFFRGTPFV-GSEGPFRWENLDYGT 142
>TC18987 similar to UP|Q8GYT1 (Q8GYT1) OBP33pep like protein, partial (48%)
Length = 367
Score = 32.0 bits (71), Expect = 0.50
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +2
Query: 419 TQQDSHQSSPPQTSRNSESGSAHSPSSSTGEAQCRTDRIVIKLFGKEPSDFPLILRAQIL 478
T SH++ PP SR+S S + + + S A T K P+ R ++
Sbjct: 89 TSAHSHEAPPPSASRSSSSSAGETSTLSAAMAPPTTSASATSTLSKTPAT-TSSTRGTVI 265
Query: 479 DWLSHSPTDI 488
+S SPT +
Sbjct: 266 SAVSRSPTTL 295
>TC8144 similar to UP|LB38_ARATH (Q9SN23) LOB domain protein 38, partial
(46%)
Length = 742
Score = 31.6 bits (70), Expect = 0.65
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 408 NHVTSSLDYPWTQQDSHQSSPPQTSRNSESGSAHSPSSST 447
NHV+ +L Y ++ H+++PP +S NS + PS T
Sbjct: 388 NHVSCALVYSGSKPLKHKATPPSSSPNSSAAPVSCPSFPT 507
>BG662033
Length = 411
Score = 31.2 bits (69), Expect = 0.85
Identities = 10/21 (47%), Positives = 15/21 (70%)
Frame = +3
Query: 27 RSAEWDLNNWRWDGDLFIASR 47
R+ EWD+N W W+G L + S+
Sbjct: 96 RADEWDVNKWAWEGILKVVSK 158
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,708,133
Number of Sequences: 28460
Number of extensions: 254719
Number of successful extensions: 1536
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of query: 1003
length of database: 4,897,600
effective HSP length: 99
effective length of query: 904
effective length of database: 2,080,060
effective search space: 1880374240
effective search space used: 1880374240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0158.4