TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0157b.4
         (77 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15918 similar to UP|Q8H387 (Q8H387) OJ1513_F02.31 protein, com...   162  1e-41
TC10425 weakly similar to UP|BAC83843 (BAC83843) LAs17 Binding p...    27  0.70
BP073434                                                               26  1.6
TC12293 weakly similar to UP|AAR10436 (AAR10436) YDA, partial (3%)     26  1.6
AI967298                                                               25  2.6
TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported]...    23  7.7
TC11317 similar to UP|Q40363 (Q40363) NuM1 protein, partial (12%)      23  7.7
BP042068                                                               23  7.7
AV411371                                                               23  7.7
AV408241                                                               23  7.7

>TC15918 similar to UP|Q8H387 (Q8H387) OJ1513_F02.31 protein, complete
          Length = 585

 Score =  162 bits (409), Expect = 1e-41
 Identities = 77/77 (100%), Positives = 77/77 (100%)
 Frame = +3

Query: 1   MGGGNAQKAKMARERNLEKQKGAKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
           MGGGNAQKAKMARERNLEKQKGAKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 84  MGGGNAQKAKMARERNLEKQKGAKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHAE 263

Query: 61  AKHPKSDVVTCFPHLQK 77
           AKHPKSDVVTCFPHLQK
Sbjct: 264 AKHPKSDVVTCFPHLQK 314


>TC10425 weakly similar to UP|BAC83843 (BAC83843) LAs17 Binding
           protein-like, partial (18%)
          Length = 514

 Score = 26.9 bits (58), Expect = 0.70
 Identities = 13/43 (30%), Positives = 22/43 (50%)
 Frame = +2

Query: 30  TNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVVTCF 72
           T+ K+ S  CK  ++  IC  ++ +C+       P   +VTCF
Sbjct: 350 TDAKSHS-NCKGSLRVIICHVNKCRCKYCVLCVDPDGGLVTCF 475


>BP073434 
          Length = 490

 Score = 25.8 bits (55), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +1

Query: 44  QTFICTTSEVKCREHAEAKHPKSDVVTCFPHL 75
           Q+++  T+E    E   AKHP  D +TC+  L
Sbjct: 82  QSYL*KTNEYYKIEEQLAKHPGEDDLTCYARL 177


>TC12293 weakly similar to UP|AAR10436 (AAR10436) YDA, partial (3%)
          Length = 637

 Score = 25.8 bits (55), Expect = 1.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = +1

Query: 31  NKKAMSIQCKV-----CMQTFICTTSEVKCREHAEAKHPK 65
           ++   SI+CK+     C+  F   T    CR   E+ HPK
Sbjct: 244 HRHCCSIKCKLTP*FLCLCVFFLQTFPKTCRHGGESFHPK 363


>AI967298 
          Length = 446

 Score = 25.0 bits (53), Expect = 2.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 41  VCMQT-FICTTSEVKCREHAEAKHPKSDVVTCFPH 74
           +C Q  F  T  E+ C    + KHP ++V TC  H
Sbjct: 258 ICYQNHFSSTAEELSC----QGKHP*NNVSTCIIH 166


>TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported] -
          Arabidopsis thaliana {Arabidopsis thaliana;}, partial
          (10%)
          Length = 498

 Score = 23.5 bits (49), Expect = 7.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 15 RNLEKQKGAKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          R  EK+K  KG   +        +C+V  Q++ CT SE  C E  E
Sbjct: 56 RREEKEKAEKGDTKQH-------RCQV--QSWHCTASEPHCSEPLE 166


>TC11317 similar to UP|Q40363 (Q40363) NuM1 protein, partial (12%)
          Length = 547

 Score = 23.5 bits (49), Expect = 7.7
 Identities = 11/24 (45%), Positives = 16/24 (65%)
 Frame = +1

Query: 5   NAQKAKMARERNLEKQKGAKGSQL 28
           +A+KAK A E  +EKQ  AK  ++
Sbjct: 151 SAKKAKRAAEDEVEKQVSAKKQKI 222


>BP042068 
          Length = 558

 Score = 23.5 bits (49), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 52  EVKCREHAEAKHPKSDVVTCFPHLQK 77
           +VK R+     + KSD++ C P L K
Sbjct: 361 DVKDRDRIGGSYLKSDLLCCNPELSK 438


>AV411371 
          Length = 427

 Score = 23.5 bits (49), Expect = 7.7
 Identities = 12/38 (31%), Positives = 18/38 (46%)
 Frame = +3

Query: 2  GGGNAQKAKMARERNLEKQKGAKGSQLETNKKAMSIQC 39
          GGG  ++  +A    ++K  G      ETNK    I+C
Sbjct: 12 GGGRGRRRNLATGLVIQKCLGRNWLPGETNKNQWLIRC 125


>AV408241 
          Length = 429

 Score = 23.5 bits (49), Expect = 7.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 42  CMQTFICTTSEVKCREHAEAKHPKSDVVTCFPH 74
           C Q  +   S   C+      H KSD +TC PH
Sbjct: 360 CQQQIL*VQSGTVCQCQ---NHLKSDWITCCPH 271


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.125    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,369,267
Number of Sequences: 28460
Number of extensions: 15234
Number of successful extensions: 90
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of query: 77
length of database: 4,897,600
effective HSP length: 53
effective length of query: 24
effective length of database: 3,389,220
effective search space: 81341280
effective search space used: 81341280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)