TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0154.6
         (227 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15625                                                               282  4e-77
TC8925                                                                196  4e-51
TC17978 similar to UP|Q9BJD1 (Q9BJD1) SAG1-related sequence 8 (F...   143  3e-35
AV773250                                                               86  1e-20
TC19106                                                                26  6.5
TC8639 similar to UP|FRI4_SOYBN (Q948P5) Ferritin 4, chloroplast...    26  6.5
AV779258                                                               26  6.5

>TC15625 
          Length = 594

 Score =  282 bits (721), Expect = 4e-77
 Identities = 141/141 (100%), Positives = 141/141 (100%)
 Frame = +2

Query: 1   MAKLYLVVILSFLHSASTGSAATNTQIKVTNNPADKLVAAINENRTAYKVSELYDNAGLA 60
           MAKLYLVVILSFLHSASTGSAATNTQIKVTNNPADKLVAAINENRTAYKVSELYDNAGLA
Sbjct: 170 MAKLYLVVILSFLHSASTGSAATNTQIKVTNNPADKLVAAINENRTAYKVSELYDNAGLA 349

Query: 61  CIALQYIKAYQGDCGAVGGPDAKKPPESQFAEVFAPNCGVKASSLAPITGRFLGCQTKYV 120
           CIALQYIKAYQGDCGAVGGPDAKKPPESQFAEVFAPNCGVKASSLAPITGRFLGCQTKYV
Sbjct: 350 CIALQYIKAYQGDCGAVGGPDAKKPPESQFAEVFAPNCGVKASSLAPITGRFLGCQTKYV 529

Query: 121 HAPEAFSEVLIQNQRSLEILH 141
           HAPEAFSEVLIQNQRSLEILH
Sbjct: 530 HAPEAFSEVLIQNQRSLEILH 592


>TC8925 
          Length = 535

 Score =  196 bits (497), Expect = 4e-51
 Identities = 91/93 (97%), Positives = 93/93 (99%)
 Frame = +2

Query: 135 RSLEILHSKNHTQVGAAVTGTDGGSPYFWCVLFSGGKPNSTFAFEGGVAKLTKPGCFSGA 194
           RSLEILHS+NHTQVGAAVTGTDGGSPYFWCVLFSGG+PNSTFAFEGGVAKLTKPGCFSGA
Sbjct: 2   RSLEILHSQNHTQVGAAVTGTDGGSPYFWCVLFSGGQPNSTFAFEGGVAKLTKPGCFSGA 181

Query: 195 NDECSGAHDWSPLSVMWLFAASVLIALGFAFPL 227
           NDECSGAHDWSPLSVMWLFAASVLIALGFAFPL
Sbjct: 182 NDECSGAHDWSPLSVMWLFAASVLIALGFAFPL 280


>TC17978 similar to UP|Q9BJD1 (Q9BJD1) SAG1-related sequence 8 (Fragment),
           partial (7%)
          Length = 680

 Score =  143 bits (360), Expect = 3e-35
 Identities = 68/137 (49%), Positives = 93/137 (67%)
 Frame = +2

Query: 32  NPADKLVAAINENRTAYKVSELYDNAGLACIALQYIKAYQGDCGAVGGPDAKKPPESQFA 91
           NPA+ +V  IN+NRT  K+  L D+ GL C+ALQY++  +G+C      + K PPE  F 
Sbjct: 269 NPANDIVDIINKNRTDQKLPHLNDSPGLGCMALQYVELCKGNCTDNNVVNCK-PPEDDFT 445

Query: 92  EVFAPNCGVKASSLAPITGRFLGCQTKYVHAPEAFSEVLIQNQRSLEILHSKNHTQVGAA 151
           EVFAPNCGV+  +   ITG  +GCQ KY+  P AFSEVLI++++SL +L +K+HT+VG  
Sbjct: 446 EVFAPNCGVELPTFGTITGHIVGCQKKYLEPPLAFSEVLIKDKKSLSLLTNKSHTEVGVX 625

Query: 152 VTGTDGGSPYFWCVLFS 168
           + G     P+FWCVLFS
Sbjct: 626 LVGLHNKGPFFWCVLFS 676


>AV773250 
          Length = 463

 Score = 85.5 bits (210), Expect(2) = 1e-20
 Identities = 37/43 (86%), Positives = 39/43 (90%)
 Frame = -3

Query: 157 GGSPYFWCVLFSGGKPNSTFAFEGGVAKLTKPGCFSGANDECS 199
           GGSPYFW VLFSGG+PN   AFEGGVAKLTKPGCFSGANDEC+
Sbjct: 461 GGSPYFWFVLFSGGQPNRPLAFEGGVAKLTKPGCFSGANDECT 333



 Score = 30.0 bits (66), Expect(2) = 1e-20
 Identities = 16/23 (69%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 206 PLSVMWLFAAS-VLIALGFAFPL 227
           P  VMWLFAAS   + LGFAFPL
Sbjct: 312 PPPVMWLFAASRSQLHLGFAFPL 244


>TC19106 
          Length = 725

 Score = 25.8 bits (55), Expect = 6.5
 Identities = 11/19 (57%), Positives = 12/19 (62%), Gaps = 1/19 (5%)
 Frame = -2

Query: 188 PGCFSGANDEC-SGAHDWS 205
           PGC S  ND C + AH WS
Sbjct: 514 PGCSSPQNDSCRARAHPWS 458


>TC8639 similar to UP|FRI4_SOYBN (Q948P5) Ferritin 4, chloroplast precursor
           (SFerH-4), partial (43%)
          Length = 515

 Score = 25.8 bits (55), Expect = 6.5
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = -3

Query: 143 KNHTQVGAAVTGTDGGSPYFWCVLFSGGKPNSTFAFEGGVAK 184
           K H   GA V G  GG      V     K N T   EGG  K
Sbjct: 240 KQHAGEGAVVAGAFGGGANHHGVRVMAVKRNRTVGVEGGRRK 115


>AV779258 
          Length = 494

 Score = 25.8 bits (55), Expect = 6.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 96  PNCGVKASSLAPITGRFLGC 115
           P C  +A + AP+T R  GC
Sbjct: 395 PGCSCRARTFAPVTPRHKGC 336


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,597
Number of Sequences: 28460
Number of extensions: 57248
Number of successful extensions: 251
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of query: 227
length of database: 4,897,600
effective HSP length: 87
effective length of query: 140
effective length of database: 2,421,580
effective search space: 339021200
effective search space used: 339021200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)