TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0154.14
         (906 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                               176  1e-44
AV426428                                                              174  7e-44
BP080049                                                              150  7e-37
BP053577                                                              138  3e-33
AV780705                                                              111  6e-25
CB826728                                                               70  1e-19
BP032481                                                               55  2e-19
BP060613                                                               87  2e-17
AV767121                                                               84  8e-17
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...    76  3e-14
TC12829                                                                75  6e-14
AV411435                                                               70  2e-12
TC20198 similar to UP|Q9ZPU0 (Q9ZPU0) At2g13980 protein, partial...    69  4e-12
AV780250                                                               68  6e-12
TC10764                                                                64  1e-10
TC9793                                                                 62  5e-10
TC13259                                                                61  9e-10
AV780577                                                               60  2e-09
CB827358                                                               59  4e-09
AV768060                                                               59  4e-09

>TC18710 
          Length = 843

 Score =  176 bits (446), Expect = 1e-44
 Identities = 97/221 (43%), Positives = 127/221 (56%)
 Frame = +2

Query: 7   FQMHPTKAPGCDGLPALFYQKFWHIIGDDVSHFCLQVLHGDIS*SIINKTLLVLIPKVKK 66
           F +  ++  G DG+  LFYQK   ++ D V+   L  L      + IN+TL+ LIPKV  
Sbjct: 161 FLLETSQPRGMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPH 340

Query: 67  PMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLITDNALVAFECF 126
           P   NQFR IS C  ++K+I+K    RLK  +PDLI   Q+ F+ GR I DN L+  E F
Sbjct: 341 PESINQFRPISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAF 520

Query: 127 HYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIMTCVSTVDFSI 186
           H + +  +       +KLDM+KAYDRVEW FL S L   GF  +WV +IM  VS V ++ 
Sbjct: 521 HAINRPGALGRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNY 700

Query: 187 MLNGAPQEPFQPHRGLRQGDPLSPYLFILCGEVFSALINKA 227
            +NG       P RGLRQGDP SPYLF+   EV S LI  +
Sbjct: 701 KINGVVGPKLLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNS 823


>AV426428 
          Length = 413

 Score =  174 bits (440), Expect = 7e-44
 Identities = 88/137 (64%), Positives = 99/137 (72%), Gaps = 14/137 (10%)
 Frame = +3

Query: 599 VASSSQVPSLPRADWRKLWKADAL--------------LPVRAYLHARGLVTDPTCPRCL 644
           VASSSQVPSLP  D RKLWKA+AL              LPV+A LHARGL  DP CPRCL
Sbjct: 3   VASSSQVPSLPSVD*RKLWKAEALPRCCETGWRACLGVLPVKASLHARGLAEDPICPRCL 182

Query: 645 VALETVQHALLFCPMVQPIWFASSLGFRLAHECRVHEFVSDFMQVADMSSLGAFLTLLYA 704
            A +T  HA+LFCP V PIWFASSLGFRL  EC++HEFV+DFMQVAD  + G FLT+LYA
Sbjct: 183 AAPKTADHAVLFCP*VHPIWFASSLGFRLNQECKMHEFVADFMQVAD*DTCGEFLTILYA 362

Query: 705 IWMARNELCFKEKASTL 721
           IW A+NELCF+    TL
Sbjct: 363 IWTAQNELCFRYTTVTL 413


>BP080049 
          Length = 356

 Score =  150 bits (380), Expect = 7e-37
 Identities = 72/101 (71%), Positives = 80/101 (78%)
 Frame = -1

Query: 806 LSFRWALGLAMDLGFRRVVFEIDCLLLYEAWKRRGGCSILDSLILDCRRLSSGFDAFDFS 865
           LS RWALGLA +LGFR +VFE DCL LYEAWKRRGGCS+LD+LILDCR L S FD F  S
Sbjct: 356 LSLRWALGLASELGFR*IVFETDCLHLYEAWKRRGGCSVLDTLILDCRNLLSYFDVFQLS 177

Query: 866 FIRRTGNSVADALAKRSFTLGVWVWIEEIPQDFYGLVQSDV 906
           F+RRT N V DALAK  F LG  VW+EE+P + YGLVQSDV
Sbjct: 176 FVRRTSNCVVDALAKLCFQLGNVVWVEELPHELYGLVQSDV 54


>BP053577 
          Length = 463

 Score =  138 bits (348), Expect = 3e-33
 Identities = 72/137 (52%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
 Frame = +3

Query: 771 GDAGFGLVARNSRGEVLAAACSSHGPAASSLLAEGLSFRWALGLAMDLGFRRVVFEIDCL 830
           G AG G+VARN  GEV+A+ACSS    +S LLAE L  RW + LA DLGFRR+  E DCL
Sbjct: 6   GIAGLGMVARNCDGEVMASACSSPVSISSPLLAEALGLRWTMQLATDLGFRRITLETDCL 185

Query: 831 LLYEAWK-RRGGCSILDSLILDCRRLSSGFDAFDFSFIRRTGNSVADALAKRSFTLGVWV 889
            L+  W+ +  G S L S+I DCR L S FD    SF+RRTGN+VAD LA+ S T    V
Sbjct: 186 QLFNTWRSQEEGRSYLSSIISDCRILISAFDYVSVSFVRRTGNTVADFLARNSDTYANMV 365

Query: 890 WIEEIPQDFYGLVQSDV 906
           W+EE+P     L+ +DV
Sbjct: 366 WVEEVPLTVVSLIDADV 416


>AV780705 
          Length = 524

 Score =  111 bits (277), Expect = 6e-25
 Identities = 55/147 (37%), Positives = 90/147 (60%), Gaps = 5/147 (3%)
 Frame = -2

Query: 319 YLGLPTIIGKSKTQIFNFVKERVWKKLKGWKERSLYRAGREVLVKAVAHAIPSYVMSCFL 378
           YLGLP I G++K+    +++E+V +KL+GWKE  L +AG+EVL+KA+  AIPSY M+   
Sbjct: 484 YLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVH 305

Query: 379 LPDGLCNQIEGMISRFYWGGDVTRRGMHCLSWKDLC-----KAKDNGRLGFRDFKMFNSA 433
            P   CN +  +++ F+W      +G   + +          +K+ G +GFRD +  N A
Sbjct: 304 FPKTFCNSLYALVADFWW----KSQGEGAVEYTGAVGTK*PLSKEKGGVGFRDLRTQNLA 137

Query: 434 LVAKNWWRIKSNPESLMGKVYRAVYFP 460
            +A+  WR+ +NPE+L  +V +++YFP
Sbjct: 136 FLARQAWRVLTNPEALWVRVMKSLYFP 56


>CB826728 
          Length = 509

 Score = 69.7 bits (169), Expect(2) = 1e-19
 Identities = 38/101 (37%), Positives = 55/101 (53%), Gaps = 14/101 (13%)
 Frame = +1

Query: 571 VLYWPFSSDGHYSTKSGYQFLRHGAEAVVASSSQVPSLPRADWRKLWKADAL-------- 622
           V +WP SSDG YS+KSGY+F+R   ++++ S+S   ++P   W+ +W A +L        
Sbjct: 205 VFFWPGSSDGWYSSKSGYEFIRLENKSLLPSTSPAAAVPSLIWKTVWSASSLPRCKEVMW 384

Query: 623 ------LPVRAYLHARGLVTDPTCPRCLVALETVQHALLFC 657
                 LPVR+ L  RGL  DP+ P   +  E   H LL C
Sbjct: 385 RACAGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507



 Score = 44.3 bits (103), Expect(2) = 1e-19
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = +3

Query: 506 DKWVPGTDTLVYSVGLAQHFGVSLVSDLMLPGLLAWNRELINFICCPPTARAIMAIPLPL 565
           D W+P +  LVY   L     +  V+DL+  G   WN  L++ +  P T    +A+ LPL
Sbjct: 15  DAWLPNSAPLVYCEDLFVDLQLKKVADLIENG--RWNENLVSMVFSPSTTAVFLAVSLPL 188

Query: 566 VPHDDVLY 573
             ++D L+
Sbjct: 189 QSYEDCLF 212


>BP032481 
          Length = 447

 Score = 55.5 bits (132), Expect(3) = 2e-19
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
 Frame = -1

Query: 832 LYEAWKRRG-GCSILDSLILDCRRLSSGFDAFDFSFIRRTGNSVADALAKRSFTLGVWVW 890
           L+++WK +    S L S++ DCR L + FD    SF+RRTGN+VA   A+ + T    VW
Sbjct: 258 LFKSWKAKEVE*SYLSSILQDCRLLFTAFDVVSLSFVRRTGNTVAGFFARNAETYANLVW 79

Query: 891 IEEIP 895
            EE+P
Sbjct: 78  PEEVP 64



 Score = 45.8 bits (107), Expect(3) = 2e-19
 Identities = 21/39 (53%), Positives = 25/39 (63%)
 Frame = -2

Query: 801 LLAEGLSFRWALGLAMDLGFRRVVFEIDCLLLYEAWKRR 839
           LLAE +S RW + LA+DLGFRR+  E DCL      K R
Sbjct: 350 LLAEAMSMRWIMQLAIDLGFRRICLETDCLTFSSLGKXR 234



 Score = 31.6 bits (70), Expect(3) = 2e-19
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 771 GDAGFGLVARNSRGEVLAAACS 792
           G  G G+VARNS G+V+A  CS
Sbjct: 439 GLGGMGMVARNSEGDVMATTCS 374


>BP060613 
          Length = 378

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 39/107 (36%), Positives = 61/107 (56%)
 Frame = +1

Query: 396 WGGDVTRRGMHCLSWKDLCKAKDNGRLGFRDFKMFNSALVAKNWWRIKSNPESLMGKVYR 455
           W      RG+H   W  L + KD G LGF+DF++ N AL+AK  WRI  NP++L  ++ +
Sbjct: 46  WWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILK 225

Query: 456 AVYFPRGTIRGAKRGYRPSYAWSSIMRSGEIFATGGMWNIGNGKSVK 502
           A+YFP        +    S+ WSS++   E+    G W +G+G++V+
Sbjct: 226 ALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETVQ 366


>AV767121 
          Length = 525

 Score = 84.3 bits (207), Expect = 8e-17
 Identities = 51/172 (29%), Positives = 83/172 (47%), Gaps = 7/172 (4%)
 Frame = +2

Query: 345 LKGWKERSLYRAGREVLVKAVAHAIPSYVMSCFLLPDGLCNQIEGMISRFYWGGDVTRRG 404
           L  WK++++   GR  L+++V  A+P + +S F LP G+      ++  F WGG      
Sbjct: 2   LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181

Query: 405 MHCLSWKDLCKAKDNGRLGFRDFKMFNSALVAKNWWRIKSNPESLMGKVYRAV--YFPRG 462
           +  + W D+CK K+ G LG +D   FN AL+ K  WR  + P+SL  +V  A   ++  G
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPDHYSCG 361

Query: 463 TIRGAKRGYRPSYAWSSIMR-----SGEIFATGGMWNIGNGKSVKAWSDKWV 509
                      S  W+ I+      +   F++G    +G G   K WS+ W+
Sbjct: 362 -----------SSWWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWL 484


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 42/103 (40%), Positives = 65/103 (62%), Gaps = 1/103 (0%)
 Frame = -3

Query: 1   DVEEALFQMHPTKAPGCDGLPALFYQKFWHIIGDDVSHFCLQVL-HGDIS*SIINKTLLV 59
           +++EA+F M   KAPG DG+  LFYQ+   I+ +DV++  L    HG++   + N+TL+ 
Sbjct: 317 EIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDVNNAILDFFDHGELPVEL-NETLVT 141

Query: 60  LIPKVKKPMHANQFRLISLCNVIFKIITKTLANRLKIILPDLI 102
           LIPK+       QFR IS C+ I+K+I+K +  RLK   PD++
Sbjct: 140 LIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLK---PDMV 21


>TC12829 
          Length = 448

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 31/46 (67%), Positives = 40/46 (86%)
 Frame = +3

Query: 350 ERSLYRAGREVLVKAVAHAIPSYVMSCFLLPDGLCNQIEGMISRFY 395
           E+ LYRAGREVL+K+V  AIP+Y+MSCF LPD +C+QIEGM+ +FY
Sbjct: 252 EKFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFY 389



 Score = 37.0 bits (84), Expect = 0.014
 Identities = 13/29 (44%), Positives = 19/29 (64%)
 Frame = +1

Query: 386 QIEGMISRFYWGGDVTRRGMHCLSWKDLC 414
           +++  +  F W GDV+RR +H L WK LC
Sbjct: 361 RLKAWLVSFIWSGDVSRRSIHWLGWKKLC 447


>AV411435 
          Length = 426

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 45/133 (33%), Positives = 64/133 (47%), Gaps = 14/133 (10%)
 Frame = +3

Query: 558 IMAIPLPLVPHDDVLYWPFSSDGHYSTKSGYQFLRHGAEAV--VASSSQVPS-------- 607
           IM  P  +   +D L+WPF   G YS KSGY+ ++     +  +ASSS  PS        
Sbjct: 3   IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIW 182

Query: 608 ---LPRADWRKLWKA-DALLPVRAYLHARGLVTDPTCPRCLVALETVQHALLFCPMVQPI 663
              +P+     LW+A +  +PV+  L  R +  D  CP C    E + HALL C   + +
Sbjct: 183 GAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAV 362

Query: 664 WFASSLGFRLAHE 676
           WF   L F + HE
Sbjct: 363 WFGCPLNF-VVHE 398


>TC20198 similar to UP|Q9ZPU0 (Q9ZPU0) At2g13980 protein, partial (13%)
          Length = 630

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 53/158 (33%), Positives = 79/158 (49%), Gaps = 4/158 (2%)
 Frame = +3

Query: 751 WSRPHPGTFKINFDAAMAPTGDAGFGLVARNSRG-EVLAAACSSHGPAASSLLAEGLSFR 809
           W  P  G FK+NFD ++  +  AG  LV R+  G EV +      G  AS +  +G S+ 
Sbjct: 93  WPPPPDGVFKLNFDTSVLASS*AGLSLVVRDCAG*EVFSIQN*VFG--ASLISRDG*SY- 263

Query: 810 WALGLAMDLGFRRVVFEIDCLLLYEAWKRRGGCSILDSLILDCRR---LSSGFDAFDFSF 866
               + +DL    V+ + DC  L+  WK++   +    +   CR    L + F   D SF
Sbjct: 264 ---SVLVDLFLTSVILKTDCYNLFVQWKKKHVSASYFGVY--CRTFFLLCACFSFVDLSF 428

Query: 867 IRRTGNSVADALAKRSFTLGVWVWIEEIPQDFYGLVQS 904
           +RR GN VA+ LAK +F+   +VWIE+ P     L+ S
Sbjct: 429 VRR-GNKVANDLAKLAFSSHGYVWIEDSPIGLVALLSS 539


>AV780250 
          Length = 494

 Score = 68.2 bits (165), Expect = 6e-12
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
 Frame = +3

Query: 569 DDVLYWPFSSDGHYSTKSGYQFLRHGAEAVVASSS----------QVPSLPRADWRKLWK 618
           +DVL WP +S+G Y++KSGY  +R+     + SSS          + P+LPR   R+L  
Sbjct: 171 NDVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPVVWKAPTLPRC--RELIG 344

Query: 619 ADAL--LPVRAYLHARGLVTDPTCPRCLVALETVQHALLFCPMVQPIWFA 666
              L  LP R+ L ARG+  D  CP C    E+    LLF P+V   WFA
Sbjct: 345 RAFLKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVPVVSKWWFA 494


>TC10764 
          Length = 555

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = +1

Query: 763 FDAAMAPTGDAGFGLVARNSRGEVLAAACSSHGPAASSLLAEGLSFRWALGLAMDLGFRR 822
           FD ++    D GFGL+A +  GEVLAA  +        L+AE  +F WAL   M   F  
Sbjct: 76  FDVSVVEHLDVGFGLLAGDHEGEVLAATSAFPLSVLPPLIAE--AFCWALSSDMTSCFGS 249

Query: 823 VVFEIDCLLLYEAW-KRRGGCSILDSLILDCRRLSSGFDAFDFSFIRRTGNS 873
             FEI  L LYE W K   G S + +L+ DCR L+  FD  + SF+  + +S
Sbjct: 250 FCFEIGYLQLYETWMKT*PGSSYVCTLVNDCRLLACYFDFIEPSFVCTSSHS 405


>TC9793 
          Length = 568

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 34/123 (27%), Positives = 57/123 (45%)
 Frame = +2

Query: 747 RPNTWSRPHPGTFKINFDAAMAPTGDAGFGLVARNSRGEVLAAACSSHGPAASSLLAEGL 806
           R   W  P  G  K+N DA  + +   GF LVAR+    +L AA           LAE L
Sbjct: 50  RRMVWEPPPEGIIKVNIDAGWSGSCSTGFSLVARSHNAVMLVAATHLEETQIEPTLAEAL 229

Query: 807 SFRWALGLAMDLGFRRVVFEIDCLLLYEAWKRRGGCSILDSLILDCRRLSSGFDAFDFSF 866
           + RW L +  ++   R++ E   L++     ++     ++ ++ D R L++ F+  +F  
Sbjct: 230 ALRWCLSMIKEMEMERIIVESYSLVVLNTLHQKTKRPDIELVVYDSRELAAEFNFINFKH 409

Query: 867 IRR 869
           I R
Sbjct: 410 IGR 418


>TC13259 
          Length = 506

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
 Frame = +1

Query: 785 EVLAAACSSHGPAASSLLAEGLSFRWALGLAMDLGFRRVVFEIDCLLLYEAWK-RRGGCS 843
           +VLA A S      S   +E ++ RW L L+++LGF  V  EID  ++  +WK  +   S
Sbjct: 55  QVLATASSKWPRTVSVATSEAMALRWGLQLSLELGFFEVEVEIDNQVVVNSWKGTKKHVS 234

Query: 844 ILDSLILDCRRLSSGFDAFDFSFIRRTGNSVADALAKRSFTLGVWVWIEEIPQDFYGLV 902
            L ++I D  R+S  F  F  +++ R  +  AD LA+ + +   +V IEE P    G++
Sbjct: 235 YLANVIADVVRISQCFRFFSLAYVPRLSHLAADYLAQFALSDYCFVGIEEHPAGLAGVL 411


>AV780577 
          Length = 486

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
 Frame = +2

Query: 739 GPMVPQVHRPNTWSRPHPGTFKINFDAAMAPTGDA-GFGLVARNSRGEVLAAACSSHGPA 797
           GP+   +  P+TW  P  G  KIN    + P  D  GFG V R++ G VL +  S H  +
Sbjct: 200 GPVKGLILGPSTWWPPPHGKLKINIVDVVVPQVDMMGFGFVMRDANGLVLVSGASKHRRS 379

Query: 798 ASSLLAEGLSFRWALGLAMDLGFRRVVF 825
            S  + E L+ RWA+ ++ DLG R ++F
Sbjct: 380 LSVAMGEALA*RWAMQVSFDLGHRVLMF 463


>CB827358 
          Length = 453

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 36/114 (31%), Positives = 54/114 (46%), Gaps = 6/114 (5%)
 Frame = +2

Query: 682 FVSDFMQVADMSSLGAFLTLLYAIWMARNELCFKEKASTLEQILTHAASLTPL------P 735
           F+  F+  AD   + +      A+W A N+L F+E     E  +  A S++ +      P
Sbjct: 125 FLLQFLVEADSDVVASCQMASCALWEAHNKLIFQEVPFRCEAAIQRATSMSQVDVSTVDP 304

Query: 736 PLEGPMVPQVHRPNTWSRPHPGTFKINFDAAMAPTGDAGFGLVARNSRGEVLAA 789
              GP+   +     W RP  G FK+NFD +      +G G+VARN  G +LAA
Sbjct: 305 SANGPVHDAI-----WRRPPRGVFKVNFDGSWKSDSVSGIGMVARNHDGLILAA 451


>AV768060 
          Length = 416

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 34/82 (41%), Positives = 44/82 (53%)
 Frame = -3

Query: 801 LLAEGLSFRWALGLAMDLGFRRVVFEIDCLLLYEAWKRRGGCSILDSLILDCRRLSSGFD 860
           L+AE + FRWAL LA + G   +VF  DC  L +A+        L  ++LDC +L + F 
Sbjct: 297 LIAEAMCFRWALNLAANWGLDSLVFSSDCQQLVKAFHCPSEFPSLAHIMLDCTQLVNSFR 118

Query: 861 AFDFSFIRRTGNSVADALAKRS 882
            F F F  R  N VA ALA  S
Sbjct: 117 NFSFCFEYRQTNRVAHALAAES 52


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,848,422
Number of Sequences: 28460
Number of extensions: 300723
Number of successful extensions: 1855
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of query: 906
length of database: 4,897,600
effective HSP length: 99
effective length of query: 807
effective length of database: 2,080,060
effective search space: 1678608420
effective search space used: 1678608420
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)