BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0151.7
(1675 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG662087 211 6e-55
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 162 4e-40
BP030435 152 5e-37
BG662122 84 2e-16
TC18698 74 2e-13
BI417841 71 1e-12
AV427422 70 3e-12
BF177840 67 2e-11
AU089582 50 4e-08
BP055130 56 5e-08
AV410603 55 1e-07
BP065719 55 1e-07
BP033666 39 3e-07
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ... 45 7e-05
TC18092 35 0.097
TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoa... 31 1.8
TC19711 30 4.1
BP059356 29 5.3
BI420576 29 5.3
AV769356 28 9.1
>BG662087
Length = 373
Score = 211 bits (538), Expect = 6e-55
Identities = 100/120 (83%), Positives = 108/120 (89%)
Frame = +1
Query: 733 NGKWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADED 792
+GKW M VDYTDLNKACPKDSYPLPSID LVDGAS NELLSLMDAYSGYHQI+MHP+DED
Sbjct: 13 SGKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDED 192
Query: 793 KTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDH 852
KTAFMTARVNYCY+T+PFGLKNAGATYQ LMDRVF VGRNMEVY+D+MIVKS +H
Sbjct: 193 KTAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 162 bits (410), Expect = 4e-40
Identities = 75/124 (60%), Positives = 96/124 (76%)
Frame = +2
Query: 1463 DNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKGAWLE 1522
+NG QF+S QT++FC MGIQMRF+SV+HPQ NGQ E AN+VIL+G++RRL EA+G W++
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 1523 ELPVVLWSYNTTVQSTTRETPFRMTYGVDAMLPAEIDNFTWRTEPDFEGENQANMAAELD 1582
ELP+VLWSYNT QS+ +ETPF +TYG D MLP EI NF+W T+ E EN+ NMA +
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEISNFSW*TKARHEEENRMNMAVGWE 367
Query: 1583 LLSE 1586
L E
Sbjct: 368 KLPE 379
>BP030435
Length = 533
Score = 152 bits (383), Expect = 5e-37
Identities = 87/186 (46%), Positives = 104/186 (55%)
Frame = +1
Query: 300 CEFHRSAGHGTDDCWTLQREIDKLIRAGYQGNRQGQWRNNGDHNKTHKREEERVDTKGKK 359
C +H++ GH T++C TLQRE+ KLI G QG
Sbjct: 103 CVYHQAMGHITEECRTLQREVGKLIATGKPTRIQGG------------------------ 210
Query: 360 KQESAAIATRGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFG 419
+ P ++TIAGGFGGGG T AARKR+ RAVN+V EV FG
Sbjct: 211 -------------------NAPVPKGVHTIAGGFGGGGITSAARKRYARAVNTVTEVLFG 333
Query: 420 FVHPDRTISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLT 479
F HP T S DF IKPH D+PIV+ LR+N NV+RVLLDQGSSADIIYG FD+LGL
Sbjct: 334 FSHPVITFSSDDFIRIKPHLDNPIVILLRVNQLNVQRVLLDQGSSADIIYGGVFDRLGLN 513
Query: 480 DKDLTP 485
+ DLTP
Sbjct: 514 EADLTP 531
>BG662122
Length = 386
Score = 84.0 bits (206), Expect = 2e-16
Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 11/126 (8%)
Frame = +2
Query: 233 KEQLYPRRDDYEQRRPWQSKSHRQREEADMVMNTELTDMLRGARGANLVDEP-EAPKYQS 291
+EQLYPRR+ ++RRP Q R+REE DM +N LTD+L+ + A++V + ++
Sbjct: 11 REQLYPRREALDRRRP*QPMGSRRREE-DMELNAHLTDILQDVKAAHMVGKSGQS*PPPR 187
Query: 292 RDANPKKWCEFHRSAGHGTDDCWTLQREIDKLIRAG----------YQGNRQGQWRNNGD 341
R + K CE+ RS H DDC+TL+REI+KLI+ G QG+RQ R GD
Sbjct: 188 RGIDTTK*CEYRRSVVHDIDDCFTLKREIEKLIKMGRLKQYDRGSRQQGDRQQGGRLQGD 367
Query: 342 HNKTHK 347
+ ++
Sbjct: 368 RQQGNR 385
>TC18698
Length = 808
Score = 73.6 bits (179), Expect = 2e-13
Identities = 37/71 (52%), Positives = 46/71 (64%)
Frame = -2
Query: 793 KTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDH 852
KT RVNY Y+ MP GLKN TYQRLMD++F Q+ +N+EVYV+DMIVKS + H
Sbjct: 801 KTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*FH 622
Query: 853 HQDLEEAFGEI 863
DL +I
Sbjct: 621 RGDLSRDLSDI 589
>BI417841
Length = 617
Score = 71.2 bits (173), Expect = 1e-12
Identities = 46/126 (36%), Positives = 67/126 (52%), Gaps = 4/126 (3%)
Frame = +1
Query: 1114 TLFVDGSSN----SSGSGTGVTLEGPGDLVLEQSLKFEFKATNNQAEYEALIAGLKLARE 1169
TL DGSS S+G+G + E + L + + + TNNQAEY LI GLK A E
Sbjct: 139 TLEFDGSSKGNPGSAGAGAVLRAEDGSKVYLREGVGNQ---TNNQAEYRGLILGLKHAHE 309
Query: 1170 VKIGSLLIRTDSQLVENQVKGTFQVKDPNLIKYLE*VRYLMTLFQEVVVEYVPRTENQRA 1229
+ ++ DSQLV QV+G+++ ++PN+ + L + FQ + +VPR N A
Sbjct: 310 QGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNSEA 489
Query: 1230 DALAKL 1235
D A L
Sbjct: 490 DVQANL 507
>AV427422
Length = 417
Score = 70.1 bits (170), Expect = 3e-12
Identities = 38/127 (29%), Positives = 69/127 (53%), Gaps = 1/127 (0%)
Frame = +1
Query: 1418 ILVAVDYFTKWIEAEPLAKITSAKIV-NFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREF 1476
+LV VD +K+ PL +AK++ + + + +V G+P +IVSD F SN +E
Sbjct: 37 VLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMSNFWKEL 216
Query: 1477 CREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQ 1536
+ G +++ ++ HP+++GQ E NR + LR + + +W +P + YNT+
Sbjct: 217 FKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYWYNTSYH 396
Query: 1537 STTRETP 1543
+T +TP
Sbjct: 397 VSTGQTP 417
>BF177840
Length = 410
Score = 67.4 bits (163), Expect = 2e-11
Identities = 33/100 (33%), Positives = 57/100 (57%)
Frame = +2
Query: 1459 AIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKG 1518
+IVSD T+F S+ R ++G ++ +++ HPQ +GQ E N+ + LR L+
Sbjct: 14 SIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLK 193
Query: 1519 AWLEELPVVLWSYNTTVQSTTRETPFRMTYGVDAMLPAEI 1558
W LP + ++YN V STT+ +PF + YG + + P ++
Sbjct: 194 MWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313
>AU089582
Length = 383
Score = 50.1 bits (118), Expect(2) = 4e-08
Identities = 24/80 (30%), Positives = 45/80 (56%)
Frame = +2
Query: 1439 SAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQV 1498
+++ Y IV G+P +I+SD G QF+S+ R F +G +++ ++ HPQ +GQ
Sbjct: 11 ASQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQS 190
Query: 1499 EYANRVILRGLRRRLKEAKG 1518
E +++ LR + + +G
Sbjct: 191 ERTIQILEDMLRACVXDLRG 250
Score = 25.8 bits (55), Expect(2) = 4e-08
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 1517 KGAWLEELPVVLWSYNTTVQSTTRETPFRMTYG 1549
+G+W + L ++ ++YN + +S+ PF YG
Sbjct: 246 EGSWDQYLSLMEFAYNNSYRSSI*MAPFEALYG 344
>BP055130
Length = 567
Score = 55.8 bits (133), Expect = 5e-08
Identities = 36/108 (33%), Positives = 54/108 (49%), Gaps = 1/108 (0%)
Frame = +2
Query: 1418 ILVAVDYFTKWIEAEP-LAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREF 1476
I+V VD +K+ P A TS+++ + IV G+PRAIVSD F+S + F
Sbjct: 191 IIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAFWKHF 370
Query: 1477 CREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKGAWLEEL 1524
+ G + +S HPQ +GQ E N+ + LR + E W+ L
Sbjct: 371 FKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
>AV410603
Length = 162
Score = 54.7 bits (130), Expect = 1e-07
Identities = 23/48 (47%), Positives = 32/48 (65%)
Frame = +1
Query: 751 KDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMT 798
KDS+P+P++D L+D G++ S +D SGYHQI + P D KT F T
Sbjct: 10 KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRT 153
>BP065719
Length = 567
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/120 (26%), Positives = 59/120 (48%), Gaps = 2/120 (1%)
Frame = +3
Query: 12 FSEDVESVAIPDNMKTLVLDSYSGDSDPK--DHLLYFNTKMVIIAASDAVKCRMFPSTFK 69
F E+V +P K +SGDS +H+ + + +A ++ +K + FPS+
Sbjct: 135 FIEEVLESELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLT 314
Query: 70 STAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 129
A WFTTL S+ + F QF + + V+ DL +++++ ES+ +Y+ R+
Sbjct: 315 KNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECK-VSXKDLASVKRKPAESIDDYLNRF 491
>BP033666
Length = 342
Score = 38.9 bits (89), Expect(2) = 3e-07
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -1
Query: 90 FSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 129
F + FL FSAN+ Q T DL+NI QQ GE ++ Y + Y
Sbjct: 273 FFN*FLTXFSANQTQKATSADLFNICQQVGERVRPYFSLY 154
Score = 33.9 bits (76), Expect(2) = 3e-07
Identities = 15/26 (57%), Positives = 17/26 (64%)
Frame = -2
Query: 67 TFKSTAMAWFTTLPRGSISNFRDFSS 92
+FK AM WF P SISNF DFS+
Sbjct: 341 SFKGVAMTWFIKQPPYSISNFTDFST 264
>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
Length = 632
Score = 45.4 bits (106), Expect = 7e-05
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = +2
Query: 1157 YEALIAGLKLAREVKIGSLLIRTDSQLVENQVKGTFQVKDPNLIKYLE*VRYLMTLFQEV 1216
Y LI GLK A + + ++ DS LV NQV+G +++K+ N+ + L F
Sbjct: 2 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181
Query: 1217 VVEYVPRTENQRADALA 1233
+ ++PR N AD A
Sbjct: 182 KINHIPREYNSEADVQA 232
>TC18092
Length = 519
Score = 35.0 bits (79), Expect = 0.097
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -2
Query: 738 MCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELL 772
MCV TD+NK CP+ PL SI++LVD +S E L
Sbjct: 101 MCVC*TDINKDCPR--XPLTSINALVDYSSSYEYL 3
>TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (4%)
Length = 756
Score = 30.8 bits (68), Expect = 1.8
Identities = 14/42 (33%), Positives = 27/42 (63%)
Frame = -2
Query: 1429 IEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSS 1470
++ L ++++AK V F R+V RF +PR ++ D+G + +S
Sbjct: 509 VQGTSLLQVSTAKTVEFSDDRVV-RFPLPRDVIGDDGAETTS 387
>TC19711
Length = 579
Score = 29.6 bits (65), Expect = 4.1
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 559 LSSGKVGKLKVDQKMARECYNNCLNLYGKKSALV---GHRC 596
L SGK +L++DQK +E NN +N+ K + HRC
Sbjct: 485 LHSGKTKRLEIDQKKRQEKQNNIINILR*KFKIYIKKKHRC 363
>BP059356
Length = 436
Score = 29.3 bits (64), Expect = 5.3
Identities = 29/92 (31%), Positives = 39/92 (41%), Gaps = 9/92 (9%)
Frame = +1
Query: 341 DHNKTHKREEERVDTKGKKKQESAAIAT----RGADDTFAQHS----GPPVGTINTIAGG 392
D N +K+E E KK E+ + + R D F + PP G AGG
Sbjct: 184 DKNPNNKKEAE---ANFKKISEAYDVLSDPQKRAVYDQFGEEGLNGQVPPPG-----AGG 339
Query: 393 FGGGGDTHAARKR-HVRAVNSVHEVAFGFVHP 423
F GGGD A R + R+ + + FGF P
Sbjct: 340 FSGGGDGGPASFRFNPRSADDILSEFFGFSSP 435
>BI420576
Length = 269
Score = 29.3 bits (64), Expect = 5.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 996 VILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTA 1036
++ GDGEHR+ + H++Q A R ++ A+ A++ TA
Sbjct: 56 ILTLTGDGEHRLNPTLLHSIQSALRRVRQEATASSALITTA 178
>AV769356
Length = 574
Score = 28.5 bits (62), Expect = 9.1
Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
Frame = -2
Query: 39 PKDHLLYFNTKMV-IIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLV 96
PK + F T ++ + A + P TFK + W T L S SN RD K L+
Sbjct: 546 PKGDVYSFGTVLLEFVTGERATQVAKAPETFKGNLVEWITQLT--SHSNLRDAIDKSLL 376
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,832,153
Number of Sequences: 28460
Number of extensions: 330943
Number of successful extensions: 1524
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of query: 1675
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1572
effective length of database: 1,966,220
effective search space: 3090897840
effective search space used: 3090897840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0151.7