BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0151.11
(1562 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066094 275 3e-79
BP052632 107 2e-23
BP075943 76 4e-14
AV780009 75 1e-13
AV427921 69 4e-12
BP063694 67 3e-11
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 59 5e-09
AV766665 59 5e-09
AU088980 58 1e-08
AV766088 54 2e-07
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 53 4e-07
BP033602 52 6e-07
AV424544 52 7e-07
BP084332 41 3e-04
BP081717 43 4e-04
BP085942 40 0.003
TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526 At2g01... 39 0.006
BP063902 38 0.011
BP065763 37 0.032
BP030995 34 0.16
>BP066094
Length = 532
Score = 275 bits (704), Expect(3) = 3e-79
Identities = 136/149 (91%), Positives = 141/149 (94%)
Frame = +2
Query: 1201 ARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPLGFEDEKKPDHVFKLKK 1260
++ EAIRLLISFSVNHNI+LHQM+VKSAFLNGYISEEVYVHQP G EDEK DH+FKLKK
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1261 SLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQ 1320
SLYGLKQAPRAWYERLSSFLLENE VRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSAN
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1321 SLCKEFSEMMQAEFEMSMMGELKYFLGIQ 1349
SLCKEFSEMMQAEFEM MMGELKYFLGIQ
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 37.4 bits (85), Expect(3) = 3e-79
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +3
Query: 1185 YSQQEGIDYTETFAPVAR 1202
YSQQ GIDYTETFAPVAR
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
Score = 23.1 bits (48), Expect(3) = 3e-79
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1175 RNKARLVAQG 1184
RNKARLVAQG
Sbjct: 10 RNKARLVAQG 39
>BP052632
Length = 489
Score = 107 bits (266), Expect = 2e-23
Identities = 50/114 (43%), Positives = 71/114 (61%)
Frame = -3
Query: 946 KTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNT 1005
KTPYELW+ +P +SYFHPFGC ++LNT D + KFD K K +LLGYS SK + +N+
Sbjct: 487 KTPYELWRGRRPTVSYFHPFGCK*FILNTNDNIGKFDNKFDKRILLGYSSNSKAYIVFNS 308
Query: 1006 DAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEDEPEE 1059
+ +EESI+V+FDD +L + F +L ++ D+ E +P E EE
Sbjct: 307 RTQVVEESINVKFDD*SIEATYRLEKDFLNLDLSDQDEEVPTNEGQPSETSHEE 146
>BP075943
Length = 547
Score = 76.3 bits (186), Expect = 4e-14
Identities = 45/159 (28%), Positives = 78/159 (48%), Gaps = 2/159 (1%)
Frame = -3
Query: 1308 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 1367
+YVDD++ + + + +F + +GE KYFLG+++ ++ G ++Q KY +
Sbjct: 515 LYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQ 336
Query: 1368 LLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKL--YRGMIGSLLYLTASRPDILFSV 1425
L+ + H T +G + YR ++G LLYL +RPDI F+V
Sbjct: 335 LISDSGHF-GFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITFAV 159
Query: 1426 HLCARFQSDPRETHLTAIKRILRYLKGTTNLGLMYKKTS 1464
+ ++F S P + H + L+YL G+ GL Y +S
Sbjct: 158 NQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASS 42
>AV780009
Length = 529
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = -1
Query: 1442 AIKRILRYLKGTTNLGLMYKKTSEYKLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWA 1501
A R+LRY+KG GL + S KL Y D+ +AG R+S +G FLG++L+SW
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1502 SKRQSTIALSTAEAEY--ISAAICSVR 1526
+K+Q+T++ S++EAEY ++A +C V+
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQ 266
>AV427921
Length = 284
Score = 69.3 bits (168), Expect = 4e-12
Identities = 34/79 (43%), Positives = 46/79 (58%)
Frame = +1
Query: 892 TPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRISVRPILNKTPYEL 951
TPQQNGV ERKNRT+ M R++L +G+ K FL EAV + +I NR + N P E
Sbjct: 22 TPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEEA 201
Query: 952 WKNIKPNISYFHPFGCVCY 970
W +P + +F C+ Y
Sbjct: 202 WSGRQPAVDHFRISRCLAY 258
>BP063694
Length = 511
Score = 66.6 bits (161), Expect = 3e-11
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Frame = -2
Query: 739 VWHRRLGHASMRKISQLSK---LNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVS 795
+WH RLGH + I QL K L++ LP C +CQ K ++ F N
Sbjct: 360 LWHSRLGHVNFDIIKQLHKHGCLDVSSILPK-----PICCTSCQMAKSKRLVFHDNNK-R 199
Query: 796 TSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQV 855
S L+L+H DL GP SI G Y ++ VDD+SR+TW L RK + V F +
Sbjct: 198 ASAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFM 19
Query: 856 QN 857
+N
Sbjct: 18 EN 13
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Frame = +2
Query: 1278 SFLLENEFVRGKVDTTLFCKTYKD-DILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEM 1336
SF++ + R D + K + D D +I+ +YVDD++ N+ +E + EF+M
Sbjct: 8 SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDM 187
Query: 1337 SMMGELKYFLGIQV--DQTPEGTYIHQSKYTKELLKKFNMLESTVAKTP------MHPTC 1388
+G LG+Q+ D+ ++ Q Y +++L++FNM + TP + +
Sbjct: 188 KDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSM 367
Query: 1389 ILEKEDKSGKVCQKLYRGMIGSLLY 1413
I E + ++ + Y +GSL+Y
Sbjct: 368 IPSSEAERMEMSRVPYASAVGSLMY 442
>AV766665
Length = 601
Score = 59.3 bits (142), Expect = 5e-09
Identities = 31/76 (40%), Positives = 43/76 (55%)
Frame = +3
Query: 1441 TAIKRILRYLKGTTNLGLMYKKTSEYKLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSW 1500
T RI YLK + G +++K + + G+ A Y G +R ST G FL NLV+W
Sbjct: 360 TFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTW 539
Query: 1501 ASKRQSTIALSTAEAE 1516
SK+Q+ IA S+ EAE
Sbjct: 540 RSKQQNIIARSSGEAE 587
>AU088980
Length = 360
Score = 57.8 bits (138), Expect = 1e-08
Identities = 28/105 (26%), Positives = 50/105 (46%)
Frame = +2
Query: 896 NGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRISVRPILNKTPYELWKNI 955
N +VERK+R + + R ++ + + K+ AV A Y+ N + + + PY+ N
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 956 KPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGF 1000
P + FG +CY K D ++ KC+ LG+ + G+
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGY 316
>AV766088
Length = 501
Score = 53.9 bits (128), Expect = 2e-07
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Frame = -3
Query: 737 QWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVST 796
Q +WH RLGH S + L + N L ++ +CE+C GK ++PF + N V T
Sbjct: 313 QSLWHSRLGHPSSSALRYL-RSNKFISYELLNYSP--VCESCVFGKHVRLPFVSSNNV-T 146
Query: 797 SRPLELLHIDLF-GPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDE 843
P ++LH DL+ PV S G R+ ++ +DD++ + W L+ K +
Sbjct: 145 VMPFDILHSDLWTSPVL--SSAGHRFYVLFLDDFTDFLWTFPLSNKSQ 8
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 52.8 bits (125), Expect = 4e-07
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = -1
Query: 1361 QSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGK-VCQKLYRGMIGSLLYLTASRP 1419
Q Y ++LKKF M S T + I GK V Y+ +IGS+ YL R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 1420 DILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTNLGL 1458
DI+ V L +RF +P + H +R LRY+KGT G+
Sbjct: 559 DIVCGVGLRSRFM-EP*DCH*QGAQRSLRYIKGTLKDGI 446
>BP033602
Length = 533
Score = 52.4 bits (124), Expect = 6e-07
Identities = 30/99 (30%), Positives = 53/99 (53%)
Frame = +3
Query: 732 SVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAK 791
SV ++ +WH RLGH + + + L +L + + S CE+C K + P+ ++
Sbjct: 255 SVRDQIMLWHNRLGHPNFQYLRHLFP-DLFKNVN----CSSLECESCVLAKNQRAPYYSQ 419
Query: 792 NVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYS 830
SRP L+H D++GP K + GKR+ + +DD++
Sbjct: 420 PY-HASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>AV424544
Length = 276
Score = 52.0 bits (123), Expect = 7e-07
Identities = 26/90 (28%), Positives = 49/90 (53%)
Frame = +3
Query: 1275 RLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEF 1334
+LSS+L +++ D +LF K ++ +YVDD+I + + + + +F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1335 EMSMMGELKYFLGIQVDQTPEGTYIHQSKY 1364
+ +G LKYFLG++V ++ G ++ Q KY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>BP084332
Length = 368
Score = 40.8 bits (94), Expect(2) = 3e-04
Identities = 20/22 (90%), Positives = 21/22 (94%)
Frame = +2
Query: 1505 QSTIALSTAEAEYISAAICSVR 1526
QSTIALSTAEAEYISAAICS +
Sbjct: 32 QSTIALSTAEAEYISAAICSTQ 97
Score = 21.6 bits (44), Expect(2) = 3e-04
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1490 CQFLGSNL 1497
CQFLGSNL
Sbjct: 4 CQFLGSNL 27
>BP081717
Length = 291
Score = 42.7 bits (99), Expect = 4e-04
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -1
Query: 739 VWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVS 795
+WH RLGH S + + +SK+ P +K S+ +C+ C K TK+PF + S
Sbjct: 168 MWHFRLGHPSSKVLQHISKV-----FPYVKLHSNIICDFCHMAKQTKLPFPISDTKS 13
>BP085942
Length = 208
Score = 40.0 bits (92), Expect = 0.003
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 837 FLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHG 871
++ KDE+H F+ FI QVQ E ++ VRSDHG
Sbjct: 39 WILHKDETHTRFTNFITQVQKEFQTSVITVRSDHG 143
>TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526
At2g01100/F23H14.7 {Arabidopsis thaliana;}, partial
(33%)
Length = 902
Score = 38.9 bits (89), Expect = 0.006
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Frame = +3
Query: 209 SEMQDLRKKSIALKSKSEKAKAEKSKA-LQAEEEESEEASEDSDEDELTLISKRLNRIWK 267
SE D +S+ E+ + K K L+ + S+ + DS DE +SKR + +
Sbjct: 555 SESSDFSGDESESRSEEERRRKRKQKKKLRDQVSRSDSSDSDSSADE---VSKRKRQHKR 725
Query: 268 HRQSKYKGSGKAKGKSESSGQKKSSLKEVTCFECKESGHYKSDCPKLKKDKKPKKHFK 325
HR +K GS + + S +K+S K ES + K +KH K
Sbjct: 726 HRVTKSSGSDFSSDEENSPVRKRSHGKHHKRHRHSESSESDLSSDDIHHKKSHRKHHK 899
>BP063902
Length = 494
Score = 38.1 bits (87), Expect = 0.011
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -3
Query: 739 VWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKA 790
VWH RLGH + ++ L L+ P+ S ++C++C GK ++PF +
Sbjct: 183 VWHHRLGHPASSALNHLRNNKLIFCEPS---RSSSVCDSCVLGKHVRLPFSS 37
>BP065763
Length = 537
Score = 36.6 bits (83), Expect = 0.032
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 271 SKYKGSGKAKGKSESSGQKKSSL-KEVTCFECKESGHYKSDCPKLK 315
SK K K + K ++ K+ + KE C+ CK++GH+K CPK K
Sbjct: 465 SKAKPGRKEQKKDQALKVKEGRIHKEHVCYFCKKAGHFKKYCPKRK 328
>BP030995
Length = 458
Score = 34.3 bits (77), Expect = 0.16
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 28/125 (22%)
Frame = -3
Query: 661 IDNVLLVDGLTHNLLSISQLADKGYDVI-FNQKSCRAVSQIDGSVLFNSKRKNNI----- 714
++N+L V G+ NL S+S + F+ SC SQ L +N +
Sbjct: 420 LNNLLHVPGVCKNLSSVSXFCKQNNVFFEFHSDSCLVKSQETEETLLQGTLRNGLCAFDN 241
Query: 715 --YKIRLSELEAQNVKCLLSVNE--------------------EQWVWHRRLGHASMRKI 752
+K+ L + LLS + + +WH RLGHAS + +
Sbjct: 240 LLHKVNLHSASTLSNSALLSSSSPASALSVSVFSSNKCAQADIDSRLWHSRLGHASQKIV 61
Query: 753 SQLSK 757
S + K
Sbjct: 60 SHVLK 46
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,505,594
Number of Sequences: 28460
Number of extensions: 341096
Number of successful extensions: 1916
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 1844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1899
length of query: 1562
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1460
effective length of database: 1,994,680
effective search space: 2912232800
effective search space used: 2912232800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0151.11