TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0150.6
         (396 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10815 similar to UP|Q940Y3 (Q940Y3) At2g17400 (At2g17400/At2g1...   594  e-171
BP047706                                                               93  7e-20
TC17352 similar to UP|Q7XYY2 (Q7XYY2) Phytochrome and flowering ...    28  2.7
TC12962 similar to AAQ89629 (AAQ89629) At3g50330, partial (27%)        28  2.7
AV409964                                                               27  4.5
AU089619                                                               27  7.8

>TC10815 similar to UP|Q940Y3 (Q940Y3) At2g17400 (At2g17400/At2g17400),
           partial (18%)
          Length = 1027

 Score =  594 bits (1532), Expect = e-171
 Identities = 291/291 (100%), Positives = 291/291 (100%)
 Frame = +2

Query: 1   MEGGEKPVDNMEIVDDDTTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDN 60
           MEGGEKPVDNMEIVDDDTTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDN
Sbjct: 155 MEGGEKPVDNMEIVDDDTTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDN 334

Query: 61  RIGDSTPNNMLEVKTGSENQLELEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYD 120
           RIGDSTPNNMLEVKTGSENQLELEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYD
Sbjct: 335 RIGDSTPNNMLEVKTGSENQLELEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYD 514

Query: 121 EPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLW 180
           EPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLW
Sbjct: 515 EPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLW 694

Query: 181 RQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTV 240
           RQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTV
Sbjct: 695 RQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTV 874

Query: 241 YQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREKN 291
           YQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREKN
Sbjct: 875 YQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREKN 1027


>BP047706 
          Length = 490

 Score = 93.2 bits (230), Expect = 7e-20
 Identities = 44/44 (100%), Positives = 44/44 (100%)
 Frame = -1

Query: 353 NPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 396
           NPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV
Sbjct: 490 NPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 359


>TC17352 similar to UP|Q7XYY2 (Q7XYY2) Phytochrome and flowering time 1
           protein, partial (4%)
          Length = 522

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 221 LQLPVGVFPQPSSVEKETTVYQAPGSGRARRDAAARA 257
           LQ PV V P+P S+EK  T+   PG+     +A A+A
Sbjct: 109 LQTPVYV-PRPQSLEKSETIDSDPGNRLYDAEAVAKA 2


>TC12962 similar to AAQ89629 (AAQ89629) At3g50330, partial (27%)
          Length = 545

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 16/36 (44%), Positives = 21/36 (57%)
 Frame = +1

Query: 54  DQGDDDNRIGDSTPNNMLEVKTGSENQLELEDVKTP 89
           D+GDD    GD+T  N L V   +E + E ED+K P
Sbjct: 367 DEGDDIQDGGDATGCNRLRVSEAAEAE-EREDLKGP 471


>AV409964 
          Length = 434

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
 Frame = -3

Query: 134 ELENFYRERSLEFKPPK-FYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESF 187
           E  N+ R +S E +P   F+G+P     LW + + +G     TG    +Q G+ F
Sbjct: 429 ESHNYQRHQSSEKEPVA*FHGKPYFSRPLWLSQVSVG*NGFHTGQN*SQQHGQQF 265


>AU089619 
          Length = 375

 Score = 26.6 bits (57), Expect = 7.8
 Identities = 20/64 (31%), Positives = 27/64 (41%), Gaps = 1/64 (1%)
 Frame = -3

Query: 185 ESFHP-PKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTVYQA 243
           +SFH  P  CT      R+F +    E+ +  RE  +L +PV   P  S    E  V  A
Sbjct: 265 QSFHLLPHACTDAQCLGRVF*KILFFEFLEEPRENRDLPIPVAGCPYFSEPRVEGLVELA 86

Query: 244 PGSG 247
              G
Sbjct: 85  LNVG 74


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,538,137
Number of Sequences: 28460
Number of extensions: 90021
Number of successful extensions: 318
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of query: 396
length of database: 4,897,600
effective HSP length: 92
effective length of query: 304
effective length of database: 2,279,280
effective search space: 692901120
effective search space used: 692901120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)