BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0150.5
(168 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP045380 135 5e-33
TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation prot... 112 4e-26
BP035132 32 0.073
BG662281 31 0.096
TC8853 similar to PIR|T09217|T09217 protein sam2B - spinach {Spi... 31 0.096
BP064239 31 0.13
AV410336 30 0.28
TC15958 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Ar... 29 0.36
TC14313 similar to UP|O80407 (O80407) Chalcone synthase , parti... 29 0.36
TC15919 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, p... 29 0.48
TC17209 similar to UP|Q93XA3 (Q93XA3) Homeodomain leucine zipper... 29 0.48
BP063082 28 0.81
TC9653 similar to UP|Q9LN63 (Q9LN63) F18O14.7 (At1g19350/F18O14_... 28 0.81
TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pro... 28 1.1
TC7885 similar to UP|RL4B_ARATH (Q9SF40) 60S ribosomal protein L... 27 1.4
TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precu... 27 1.4
TC10727 weakly similar to UP|Q15287 (Q15287) RNA-binding protein... 27 1.4
TC19097 27 1.4
AV408145 27 1.4
TC17922 27 1.4
>BP045380
Length = 558
Score = 135 bits (339), Expect = 5e-33
Identities = 63/65 (96%), Positives = 64/65 (97%)
Frame = -2
Query: 104 RLPPRVADLRRR*NPTLRRNPSVDLKSLLNGNKSSEYCGPLTSFDWNEAEPCRIGTSLTC 163
RLPPRVADLRRR*NPTLRRNP VDLKSLLNGNKSS+YCGPLTSFDWNEAEPCRIGTSLTC
Sbjct: 557 RLPPRVADLRRR*NPTLRRNPRVDLKSLLNGNKSSKYCGPLTSFDWNEAEPCRIGTSLTC 378
Query: 164 RRRFF 168
RRRFF
Sbjct: 377 RRRFF 363
>TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation protein ATAN11,
partial (79%)
Length = 919
Score = 112 bits (279), Expect = 4e-26
Identities = 72/145 (49%), Positives = 80/145 (54%), Gaps = 17/145 (11%)
Frame = +3
Query: 33 NWSVRHDKKYHLAIASLLEQCPNCIEIV*LDDSNARSDPTRISPSSTRTHHQGHLHPR*G 92
NWSVR DKKY LAIASLLEQ PN +EIV LDDSN P P+ + H
Sbjct: 159 NWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRP---DPNLSFEH---------- 299
Query: 93 VPAPRPPRHLQRLPPRVA---DLRRR*NPTLR--------------RNPSVDLKSLLNGN 135
P PP +P + DL + LR P V+LKSLLNGN
Sbjct: 300 ---PYPPTKAIFIPDKECQRPDLLATSSDFLRVWRISDADETQPSAATPRVELKSLLNGN 470
Query: 136 KSSEYCGPLTSFDWNEAEPCRIGTS 160
K+SEYCGPLTSFDWNEAEP RIGTS
Sbjct: 471 KNSEYCGPLTSFDWNEAEPRRIGTS 545
Score = 75.5 bits (184), Expect = 4e-15
Identities = 42/60 (70%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
Frame = +2
Query: 68 RSDPTRISPSSTRTH---HQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR*NPTLRRNP 124
R DPTR S RT HQGH HP V P PPRHLQRLPPRVADLRRR*NPTLRR+P
Sbjct: 260 RRDPTR-PESLLRTPIPTHQGHFHP*QRVSTP*PPRHLQRLPPRVADLRRR*NPTLRRHP 436
>BP035132
Length = 475
Score = 31.6 bits (70), Expect = 0.073
Identities = 17/36 (47%), Positives = 18/36 (49%)
Frame = +2
Query: 69 SDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQR 104
S P SPSSTR HHQ H H P R R +R
Sbjct: 116 STPNHPSPSSTRHHHQNHNHNPLIFPNTRSQRFRRR 223
>BG662281
Length = 399
Score = 31.2 bits (69), Expect = 0.096
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = +2
Query: 71 PTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR*NPTLRRNPSV 126
PT IS T +H L P P+P PP +PP + R+R L RNP +
Sbjct: 227 PTSISTPPTPSHRTSTLKPETNTPSPSPP----SIPPS-SPSRKRTKFVLLRNPQL 379
>TC8853 similar to PIR|T09217|T09217 protein sam2B - spinach {Spinacia
oleracea;}, partial (43%)
Length = 1157
Score = 31.2 bits (69), Expect = 0.096
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Frame = -3
Query: 44 LAIASLLEQCPNCIEIV*LDDSNARSDPTRISPSSTRTHHQGHLHPR*GVPAPRP--PRH 101
L+ +SLL+ P + DS A P+ + SS +TH P P P+ PRH
Sbjct: 420 LSSSSLLQSPPYLLHHHHQPDS-ATPPPSSPALSSPQTHQLAAAFPSSTHPHPKTLHPRH 244
Query: 102 LQ--------------RLPPR--VADLRRR*NPTLRRNPSVDLKSLLNGNKSSEYCGPLT 145
+ PPR LRR+ N + RR+PS+ S + E P +
Sbjct: 243 SR*SRRRSSPNSTSSHAPPPRGSATTLRRKGNCSCRRSPSLTASSEARPRRRGEVFSPRS 64
Query: 146 SF 147
SF
Sbjct: 63 SF 58
>BP064239
Length = 534
Score = 30.8 bits (68), Expect = 0.13
Identities = 20/52 (38%), Positives = 24/52 (45%)
Frame = +3
Query: 64 DSNARSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR 115
D+ RS P +SP +TRTH G +P PR L R R RRR
Sbjct: 18 DARTRSIPLGLSPRATRTHAIGR-------RSPEGPRRLWRRNSRAWRTRRR 152
>AV410336
Length = 358
Score = 29.6 bits (65), Expect = 0.28
Identities = 23/64 (35%), Positives = 24/64 (36%), Gaps = 16/64 (25%)
Frame = +2
Query: 68 RSDPTRISPSSTRTHH----------------QGHLHPR*GVPAPRPPRHLQRLPPRVAD 111
R P + P RT H Q HL P G RPP LQ L PR
Sbjct: 32 RRRPLPLPPRLRRTRHHHQPQTQNRLPLPHQLQPHLRPTLGEILHRPPPPLQHLHPRRPL 211
Query: 112 LRRR 115
LRRR
Sbjct: 212 LRRR 223
>TC15958 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Arabidopsis
thaliana;}, partial (52%)
Length = 800
Score = 29.3 bits (64), Expect = 0.36
Identities = 19/44 (43%), Positives = 22/44 (49%), Gaps = 8/44 (18%)
Frame = +1
Query: 80 RTHHQGHLH----PR*GVPAPRPPRH----LQRLPPRVADLRRR 115
RTHH+ H H PR P+ R PR L+R PP L RR
Sbjct: 250 RTHHRRHRHRRQQPRRDSPSSRHPRRPLESLRRRPPPSTLLERR 381
>TC14313 similar to UP|O80407 (O80407) Chalcone synthase , partial (98%)
Length = 1567
Score = 29.3 bits (64), Expect = 0.36
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +1
Query: 68 RSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR 115
R R SP +H+ HL PRP H RLP R LRRR
Sbjct: 607 REQQRRKSPRRVFRNHRRHL--------PRPI*HPPRLPRRAGTLRRR 726
>TC15919 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, partial
(21%)
Length = 523
Score = 28.9 bits (63), Expect = 0.48
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +1
Query: 82 HHQGHLHPR*GVPAPRPPRHLQRLPPRVADL 112
HH H H R GVP+P P LPP A L
Sbjct: 40 HHHHHHHHRHGVPSPPP------LPPSAAPL 114
>TC17209 similar to UP|Q93XA3 (Q93XA3) Homeodomain leucine zipper protein
HDZ3 (Fragment), partial (35%)
Length = 586
Score = 28.9 bits (63), Expect = 0.48
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 64 DSNARSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQR 104
DS AR ++ PS++ +HH HL P + P P H+QR
Sbjct: 205 DSAARFQISQTRPSNS-SHHHSHLPPLIELFRPPGPPHIQR 86
>BP063082
Length = 473
Score = 28.1 bits (61), Expect = 0.81
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 79 TRTHHQGHLHPR*GVPAPRPPRHLQRLPPR 108
+RTHH H H G P PPRH R PPR
Sbjct: 5 SRTHH--HHHSTTGRPHNAPPRH-YRPPPR 85
>TC9653 similar to UP|Q9LN63 (Q9LN63) F18O14.7 (At1g19350/F18O14_4) (BZR2),
partial (40%)
Length = 604
Score = 28.1 bits (61), Expect = 0.81
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 90 R*GVPAPRPPRHLQRLPP-RVADLRRR*NPTLRRNPSVDLKSLL 132
R G P P PP + LPP R+ +RRR + ++RR+ V L+
Sbjct: 199 RDGSPTPLPPPVILPLPPRRLPPIRRRRSCSVRRHYGVRASHLI 68
>TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (33%)
Length = 1002
Score = 27.7 bits (60), Expect = 1.1
Identities = 17/57 (29%), Positives = 26/57 (44%)
Frame = +2
Query: 46 IASLLEQCPNCIEIV*LDDSNARSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHL 102
+ + L C N + I +S++ S+ PSS + H HP+ PPRHL
Sbjct: 815 VXARLHLCSNILSISNHSNSSSSSNNNNNGPSSYLSRCSLHNHPQCNHLK*DPPRHL 985
>TC7885 similar to UP|RL4B_ARATH (Q9SF40) 60S ribosomal protein L4-2 (L1),
complete
Length = 1554
Score = 27.3 bits (59), Expect = 1.4
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +2
Query: 83 HQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR*NPTLRR 122
H+G LHP * RP +HLQ+ PP + L R P LRR
Sbjct: 170 HEG-LHPS*HRQF-RPFQHLQKQPPALRRLPPRRPPDLRR 283
>TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precursor,
partial (52%)
Length = 1060
Score = 27.3 bits (59), Expect = 1.4
Identities = 13/29 (44%), Positives = 15/29 (50%), Gaps = 1/29 (3%)
Frame = +2
Query: 74 ISPSSTRTHHQGHLHPR*GVPAP-RPPRH 101
I P + HH H HP PAP +PP H
Sbjct: 260 IHPPAHAPHHHHHHHPPAPAPAPIKPPVH 346
>TC10727 weakly similar to UP|Q15287 (Q15287) RNA-binding protein
(RNA-binding protein S1, serine-rich domain), partial
(15%)
Length = 932
Score = 27.3 bits (59), Expect = 1.4
Identities = 18/42 (42%), Positives = 23/42 (53%)
Frame = +1
Query: 77 SSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR*NP 118
++T H Q H H R PRHL+ LPP + LRRR +P
Sbjct: 40 TTTAIHLQPHRH---SPLMARVPRHLRPLPPLL--LRRRHDP 150
>TC19097
Length = 405
Score = 27.3 bits (59), Expect = 1.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 74 ISPSSTRTHHQGHLHPR*GVPAPRPP 99
+ PS+TRT H+ +H R PA RPP
Sbjct: 76 VKPSNTRTSHRPPVHYR--PPAKRPP 147
>AV408145
Length = 422
Score = 27.3 bits (59), Expect = 1.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 76 PSSTRTHHQGHLHPR*GVPAPRP-PRHLQRLPPRVADLRRR*NP-TLRRN 123
P+ST HH HPR G PRP PR P + L++ +P LRR+
Sbjct: 55 PTSTNHHH----HPRGGRTIPRPRPREPHDEPLQAPHLQKPQHPHNLRRH 192
>TC17922
Length = 470
Score = 27.3 bits (59), Expect = 1.4
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 86 HLHPR*GVPAPRPPRHLQRLPPRVADLRRR 115
HLH + P PRPPRH RV RRR
Sbjct: 395 HLHRKTRPPRPRPPRH------RVQHHRRR 466
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.328 0.139 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,616,753
Number of Sequences: 28460
Number of extensions: 62569
Number of successful extensions: 666
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of query: 168
length of database: 4,897,600
effective HSP length: 84
effective length of query: 84
effective length of database: 2,506,960
effective search space: 210584640
effective search space used: 210584640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0150.5