BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0148.5
(586 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like prot... 39 0.002
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 39 0.003
TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%) 39 0.003
TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 37 0.012
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28... 35 0.026
TC12051 35 0.044
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-... 35 0.044
TC15487 similar to UP|O23144 (O23144) Proton pump interactor (AT... 34 0.058
TC12790 similar to PIR|H96696|H96696 protein F1N21.16 [imported]... 34 0.076
TC13235 similar to UP|Q9LQB6 (Q9LQB6) F4N2.1, partial (38%) 34 0.076
TC9483 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial ... 33 0.13
BP031757 33 0.13
TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.3... 33 0.17
BP067004 33 0.17
TC18897 weakly similar to UP|Q9XEV3 (Q9XEV3) TIA-1 related prote... 32 0.22
TC15645 similar to UP|ROA3_HUMAN (P51991) Heterogeneous nuclear ... 32 0.29
TC8917 similar to UP|AAH64262 (AAH64262) MGC76273 protein, parti... 32 0.29
TC15111 similar to UP|RRS1_ARATH (Q9SH88) Ribosome biogenesis re... 32 0.29
AV419591 32 0.37
TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), p... 32 0.37
>TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like protein, complete
Length = 1794
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = +1
Query: 28 EQDQEQSCSKKKRRKKKKIKEEGIESHEHDQVLLPEPVVVATAIPITLETPKEQGAEPIE 87
E E S KKK +K+KK K+E ++ E D LL + E G E E
Sbjct: 1495 EDTHEPSADKKKEKKEKKKKKE--KNEEKDVPLLAD----------------EDGDEEKE 1620
Query: 88 ATVVHPVPDQRPAKTHRKKKKKETV--LEPQPEPEPEPKETSNTDHSEPTQLCSVKKKKK 145
K +KKK+KE+ +E Q + K+ H+EP + + KKK
Sbjct: 1621 VV-----------KKEKKKKRKESTENVELQNGDDAGEKKKKRKKHAEPEESAEMPSKKK 1767
Query: 146 RKGAESNE 153
K +S +
Sbjct: 1768 GKKKKSED 1791
Score = 38.1 bits (87), Expect = 0.004
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +1
Query: 2 DSHSQSELLHSKKRRREEKPEPLPSPEQ-DQEQSCSKKKRRKKKKIKEEGIESHEHDQVL 60
D + + KK + EEK PL + E D+E+ KK+++KK+K E +E D
Sbjct: 1519 DKKKEKKEKKKKKEKNEEKDVPLLADEDGDEEKEVVKKEKKKKRKESTENVELQNGDDA- 1695
Query: 61 LPEPVVVATAIPITLETPKEQGAEPIEATVVHPVPDQRPAKTHRKKKKKE 110
+ +++ AEP E+ + P+K KKKK E
Sbjct: 1696 ------------GEKKKKRKKHAEPEESA-------EMPSKKKGKKKKSE 1788
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +1
Query: 102 THRKKKKKETVLEPQPE--PEPEPKETSNTDHSEPTQLCSVKKKKKRKGAESNEAVAELA 159
TH++ + L P P+ PEP K S + + P+ + S+ + R SN A A L+
Sbjct: 454 THKRVSVSGSALSPPPKKLPEPMTKPPSASAVTRPSSI-SLTPWRLRLLPRSNAASA-LS 627
Query: 160 TVCTEPPAVQGGVLPEPKPKEPCSTEHPRVCPEPPLGL 197
+ T PPA G P P P P + HP P + L
Sbjct: 628 SRSTAPPAAPG---PPPPPPGPLTAPHPSSPPGSRISL 732
>TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%)
Length = 1231
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/141 (19%), Positives = 62/141 (43%)
Frame = +3
Query: 6 QSELLHSKKRRREEKPEPLPSPEQDQEQSCSKKKRRKKKKIKEEGIESHEHDQVLLPEPV 65
+ E HS + + + S D+E+ ++++KKKK +++ ++S + +
Sbjct: 546 EGEKKHSTLLEKLHRSDSSSSSSSDEEEGKEGEEKKKKKKKEKKEVKSTDEN-------- 701
Query: 66 VVATAIPITLETPKEQGAEPIEATVVHPVPDQRPAKTHRKKKKKETVLEPQPEPEPEPKE 125
T++P+ ++ + + + +P H KK +E P P P P E
Sbjct: 702 ---TSVPVEVDPAHAEEKKGFLDKIKEKLPG------HGKKTTEEATTSP-PPPPPSVSE 851
Query: 126 TSNTDHSEPTQLCSVKKKKKR 146
T++T H + ++K K++
Sbjct: 852 TTSTPHEGAEKKGILEKIKEK 914
>TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (96%)
Length = 764
Score = 36.6 bits (83), Expect = 0.012
Identities = 20/67 (29%), Positives = 30/67 (43%)
Frame = +3
Query: 85 PIEATVVHPVPDQRPAKTHRKKKKKETVLEPQPEPEPEPKETSNTDHSEPTQLCSVKKKK 144
P V+ P D++PA+ ++KK TV E P E +PK KKK+
Sbjct: 57 PNSQFVMAPKADKKPAEKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKR 236
Query: 145 KRKGAES 151
+K E+
Sbjct: 237 SKKSVET 257
>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
{Arabidopsis thaliana;}, partial (8%)
Length = 937
Score = 35.4 bits (80), Expect = 0.026
Identities = 37/169 (21%), Positives = 65/169 (37%), Gaps = 28/169 (16%)
Frame = -3
Query: 16 RREEKPEPLPSP---------EQDQEQSCSKKKR----RKKKKIKEEGI-ESHEHDQVLL 61
+++++P PL P E++ +Q S+ K ++ +EEG E E D+
Sbjct: 884 QKQKRPSPLEDPPTASSSSESEEEDDQPLSQVKHAAAEEEELSSEEEGSSEEEEEDETTA 705
Query: 62 PEPVVVAT--------------AIPITLETPKEQGAEPIEATVVHPVPDQRPAKTHRKKK 107
P P T A E+ + P A+ P P +P T K
Sbjct: 704 PAPPAATTSHTKPPQPEPESDSATQSDSESDTDSDQAP-SASAPTPNPKVKPLAT--KPM 534
Query: 108 KKETVLEPQPEPEPEPKETSNTDHSEPTQLCSVKKKKKRKGAESNEAVA 156
+ +P+ +P P P +++ +E K+ K+K +S A A
Sbjct: 533 DQTQTHKPKAQPSPAPAKSAAKRAAESNANAGDSKRAKKKAVDSAPAAA 387
Score = 31.2 bits (69), Expect = 0.49
Identities = 39/184 (21%), Positives = 72/184 (38%), Gaps = 14/184 (7%)
Frame = -3
Query: 102 THRKKKKKETVLEPQP--EPEPEPKETSNTDHSEPTQLCSVKKKKKRKGAESNEAVAELA 159
T +K+K+ + LE P E +E + S+ + +++ + S+E E
Sbjct: 893 TMAQKQKRPSPLEDPPTASSSSESEEEDDQPLSQVKHAAAEEEELSSEEEGSSEEEEEDE 714
Query: 160 TVCTEPPAVQGGVL--PEPKPKEPCST----EHPRVCPEPPLGLAIPIDPEKNRKEAEPN 213
T PPA P+P+P+ +T E + P A +P+ +P
Sbjct: 713 TTAPAPPAATTSHTKPPQPEPESDSATQSDSESDTDSDQAPSASAPTPNPKVKPLATKPM 534
Query: 214 ESNAEH-PRACPEPPLGLAIPIDPEKNKGENLTPTDENELDRRNRREELV-----ALVTS 267
+ H P+A P P P K+ + ++ N D + +++ V A S
Sbjct: 533 DQTQTHKPKAQPSPA--------PAKSAAKRAAESNANAGDSKRAKKKAVDSAPAAAAGS 378
Query: 268 DEKI 271
DE++
Sbjct: 377 DEEM 366
>TC12051
Length = 629
Score = 34.7 bits (78), Expect = 0.044
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Frame = +3
Query: 309 IGQSQTIPVVDTEQKINKRSRMSKMKRK-RMNSMPDKHNT-EPPETKKRVLDREEPNKCN 366
I Q + I + E K K +RK N P NT E P+ ++EPN
Sbjct: 123 IQQDEEIQKIQKENKARVVREEKKRRRKWAQNITPRPSNTREKPQDISGTKPQQEPNTAA 302
Query: 367 AKLPETLMLASNCHIDQAIPSDSNPAVPTNPEHKTPKKWKKRAKKKNVLLSEGG 420
LP+ ++ Q SDS+ + KK K++ + V+LSE G
Sbjct: 303 GFLPDNIVQMLAAQEKQVFLSDSDEEKDGVKPTNSKKKKSKKSGLEPVILSEIG 464
>TC9175 weakly similar to UP|INAD_DROME (Q24008)
Inactivation-no-after-potential D protein, partial (5%)
Length = 692
Score = 34.7 bits (78), Expect = 0.044
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 105 KKKKKETVLEPQPEPEPEPKETSNTDHSEPTQLCSVKKKKKRKGA 149
++ KK+ + PQPEPEPE KE + + ++KK+ + A
Sbjct: 23 RRTKKQAKIVPQPEPEPEKKEEGKEEEKPAAEEGKPEEKKEEEKA 157
Score = 27.7 bits (60), Expect = 5.4
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Frame = +2
Query: 104 RKKKKKETVLEPQPEPEPEPK---------ETSNTDHSEPTQLCSVKKKKKRKGAESNE 153
R KK+ + V +P+PEPE + + E + + + + + KK+ G E N+
Sbjct: 26 RTKKQAKIVPQPEPEPEKKEEGKEEEKPAAEEGKPEEKKEEEKAAEEAKKEEGGEEKND 202
>TC15487 similar to UP|O23144 (O23144) Proton pump interactor
(AT4g27500/F27G19_100), partial (16%)
Length = 1153
Score = 34.3 bits (77), Expect = 0.058
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 13/163 (7%)
Frame = +2
Query: 95 PDQRPAKTHRKKKK-----KETVLEPQPEPEPEPKETSNTDHSEPTQLCSVKKKKKRKG- 148
PD++P K + K +P+ EP+P P+ET T ++ +K K +K
Sbjct: 182 PDEKPLLEEPKPAETDAFSKAIPKQPKEEPKPSPQETLPTQKESKNKVRDLKAKPDKKDL 361
Query: 149 AESNEAVAELATVCTEP--PAVQGGVLPEPKPKEPCST-----EHPRVCPEPPLGLAIPI 201
E++E E+ T P P + L E K +E + E + E A
Sbjct: 362 EEADEYEFEVPRKETPPKEPEIDPAKLKEMKREEEIAKAKQAWERKKKLAEKAAAKAALK 541
Query: 202 DPEKNRKEAEPNESNAEHPRACPEPPLGLAIPIDPEKNKGENL 244
++ K+ + E A+ E P + E+ +N+
Sbjct: 542 AQKEAEKKLKDREKKAKKKAGIVEEPADEVVEAPQEETINDNV 670
Score = 30.8 bits (68), Expect = 0.64
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Frame = +2
Query: 429 PTETPVQKSVSPINAPSID---PTLPTDQPVPID---LATPKHSEGKMSN--AQRNNVLL 480
P E P+ + P + P P ++P P L T K S+ K+ + A+ + L
Sbjct: 182 PDEKPLLEEPKPAETDAFSKAIPKQPKEEPKPSPQETLPTQKESKNKVRDLKAKPDKKDL 361
Query: 481 SEGVKSNEQPTETPVQKSVNPIKAPSIDPTLPTDQPVPIDLATPKHSEGKMSKAQRRKKN 540
E ++E E P +++ P K P IDP + ++A K + + K +
Sbjct: 362 EE---ADEYEFEVPRKET--PPKEPEIDPAKLKEMKREEEIAKAKQAWERKKKLAEKAAA 526
Query: 541 KRALKS 546
K ALK+
Sbjct: 527 KAALKA 544
>TC12790 similar to PIR|H96696|H96696 protein F1N21.16 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 727
Score = 33.9 bits (76), Expect = 0.076
Identities = 36/161 (22%), Positives = 51/161 (31%)
Frame = -1
Query: 99 PAKTHRKKKKKETVLEPQPEPEPEPKETSNTDHSEPTQLCSVKKKKKRKGAESNEAVAEL 158
P HR + + + L P P TSN P S +K G + + A
Sbjct: 466 PRPHHRHRHRPQPTLPPAHTPSCAA--TSNPAPDTPASSNSPSRKPSTAGTHAAASPAG- 296
Query: 159 ATVCTEPPAVQGGVLPEPKPKEPCSTEHPRVCPEPPLGLAIPIDPEKNRKEAEPNESNAE 218
T C + LP P P T P P PP P R +P ++ A
Sbjct: 295 HTQCDRTSSAPHLALPAPTQTTP*ETNSPDAPPAPPRRSHSSTAPSSRR--VKPTQAPAG 122
Query: 219 HPRACPEPPLGLAIPIDPEKNKGENLTPTDENELDRRNRRE 259
P P P+++ P D + RR+
Sbjct: 121 SPARANAAP--------PQRSSSRRNRPGDNAQAPGARRRD 23
>TC13235 similar to UP|Q9LQB6 (Q9LQB6) F4N2.1, partial (38%)
Length = 467
Score = 33.9 bits (76), Expect = 0.076
Identities = 20/75 (26%), Positives = 28/75 (36%)
Frame = +3
Query: 165 PPAVQGGVLPEPKPKEPCSTEHPRVCPEPPLGLAIPIDPEKNRKEAEPNESNAEHPRACP 224
PP G + PKP +PR+ P P + P + K + S P
Sbjct: 144 PPPPPGSPISSPKPPR-----NPRISPPRPPNMPTSSKPPPSAKRIRSSRSPTPSPSLPN 308
Query: 225 EPPLGLAIPIDPEKN 239
PPL L +P+ N
Sbjct: 309 SPPLPLLLPLRHHHN 353
>TC9483 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial (51%)
Length = 549
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/93 (24%), Positives = 36/93 (37%), Gaps = 4/93 (4%)
Frame = +3
Query: 78 PKEQGAEPIEATVVHPVPDQRPAKTHRKKKKKETVLEPQPEPEPEPKETSNTDHSEPTQL 137
P + E T +H VPD + T + K T P+ P P P E S + + PTQ
Sbjct: 138 PPAESVEKSRFTSLHSVPDS--SSTTPPTRTKPTQSPPRSMPAPPPHEPSPSKPTSPTQT 311
Query: 138 ----CSVKKKKKRKGAESNEAVAELATVCTEPP 166
CS + ++ + ++ PP
Sbjct: 312 R*NPCSTPPSRPSTRRFTSSSTPPASSTARTPP 410
>BP031757
Length = 507
Score = 33.1 bits (74), Expect = 0.13
Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
Frame = +2
Query: 2 DSHSQSELLHSKKRRR----EEKPEPLPSPEQDQEQSCSKKKRRKKKKIKEEGIESHEHD 57
+ + + L +KR+R EE E + ++E+ KKK+ +KKK +EE E E +
Sbjct: 104 EEETPPQQLKPRKRKRMKLLEEDNEDKDGEDYEEEEEKKKKKKSRKKKEEEEEEEQEEPE 283
Query: 58 QVLLPE 63
PE
Sbjct: 284 SPQPPE 301
Score = 28.1 bits (61), Expect = 4.1
Identities = 26/87 (29%), Positives = 44/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 96 DQRPAKTHRKKKKKETVLEPQPEPE-PEPKETSNTDHSEPTQLCSVKKKKKRKGAESNEA 154
+++ K +KKK+E E Q EPE P+P E + +P + S K + ++K S E
Sbjct: 209 EEKKKKKKSRKKKEEEEEEEQEEPESPQPPEDAK-PIGDPVRF-SGKGRGRKKHFNSFEF 382
Query: 155 VAELATVCTEPPAVQGGVLPEPKPKEP 181
T+ E P + ++PE K ++P
Sbjct: 383 DGSQYTL--EDPVL---LVPEDKEQKP 448
>TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.35
{Arabidopsis thaliana;} , partial (16%)
Length = 1208
Score = 32.7 bits (73), Expect = 0.17
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 174 PEPKPKEPCSTEHPRVCPEPPLGLAIPIDPEKNRKEAEPNESNAEHPRACPEP 226
P P+ P +HP++ P PPL DP + R P P+ P+P
Sbjct: 343 PRRPPRPP*FLQHPQIHPPPPLRPPPRQDPPQARPPWSPPTPRLPQPKLQPQP 501
>BP067004
Length = 422
Score = 32.7 bits (73), Expect = 0.17
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 7/53 (13%)
Frame = -3
Query: 32 EQSCSKKKRRKKKKIKEE-------GIESHEHDQVLLPEPVVVATAIPITLET 77
+ C KK++KKKK KEE G H H + +P P V + + + +
Sbjct: 342 QAQCELKKKKKKKKKKEEEDECNRVGRRRHVHSHIAVPPPSVTVLLVLLVISS 184
>TC18897 weakly similar to UP|Q9XEV3 (Q9XEV3) TIA-1 related protein, partial
(5%)
Length = 481
Score = 32.3 bits (72), Expect = 0.22
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -3
Query: 93 PVPDQRPAKTHRKKKKKETVLEPQPEPEPEPKETSNTDHSEPTQLCSVKKKKKRKG 148
P+ PA + ++ + T L+P+ E EP+ + +CS K ++K +G
Sbjct: 257 PMAGSSPASSSKRSSSESTPLQPETEYRREPRIDLVEERGRKRDICSQKHQRKGQG 90
>TC15645 similar to UP|ROA3_HUMAN (P51991) Heterogeneous nuclear
ribonucleoprotein A3 (hnRNP A3) (D10S102), partial (5%)
Length = 938
Score = 32.0 bits (71), Expect = 0.29
Identities = 21/80 (26%), Positives = 30/80 (37%)
Frame = +2
Query: 386 PSDSNPAVPTNPEHKTPKKWKKRAKKKNVLLSEGGKSNEHNGQPTETPVQKSVSPINAPS 445
P S PA T H+ P + + R + G S H E P K+ + ++P
Sbjct: 41 PRRSRPATTTTRNHRDPTRRRHRVQLVQ------GHSQRHRYHRPEPPPLKTPTNPSSPK 202
Query: 446 IDPTLPTDQPVPIDLATPKH 465
P P P P P+H
Sbjct: 203 CPPQTPKFPPYPPLQDPPRH 262
>TC8917 similar to UP|AAH64262 (AAH64262) MGC76273 protein, partial (3%)
Length = 676
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Frame = +2
Query: 82 GAEPIEATVVHPVPDQRPAKTHRKKKKKETVLEPQPEPEPEPKETSNTDHSEPTQLCS-- 139
G+ P PVP+ + ++ K E V E + E + +ET N D+ + L +
Sbjct: 137 GSNPKTNEGPEPVPEIK-----NEEVKVEQVQESEANVEKKTEETPNEDNKSLSTLLNEN 301
Query: 140 ---VKKKKKRKGAESNEAVAELATVCTEPPAVQGGVLPEPKPKEP 181
KK ++ AE E A V E V EPK +EP
Sbjct: 302 EEEAKKPEEEVQAEPKEEKATTEEVKVETKEVNPKPEEEPKEEEP 436
Score = 30.0 bits (66), Expect = 1.1
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +2
Query: 16 RREEKPEPLPS--PEQDQEQSCSKKKRRKKKKIKEEGIESHEHDQVLLPEPVVVATAIPI 73
+ E PEP+P E+ + + + + +KK +E E ++ LL E
Sbjct: 149 KTNEGPEPVPEIKNEEVKVEQVQESEANVEKKTEETPNEDNKSLSTLLNEN--------- 301
Query: 74 TLETPKEQGAEPIEATVVHPVPDQRPAKTHRKKKKKETVLEPQPEPEPEPKE 125
+E+ +P E P + K ++ K ET E P+PE EPKE
Sbjct: 302 -----EEEAKKPEEEVQAEP----KEEKATTEEVKVETK-EVNPKPEEEPKE 427
>TC15111 similar to UP|RRS1_ARATH (Q9SH88) Ribosome biogenesis regulatory
protein homolog, partial (62%)
Length = 1280
Score = 32.0 bits (71), Expect = 0.29
Identities = 37/144 (25%), Positives = 51/144 (34%), Gaps = 7/144 (4%)
Frame = +2
Query: 397 PEHKTPKKWKKRAKKKNVLLSEGGK--SNEHNGQPTETPVQKSVSPINAPSIDPTLPTDQ 454
P+ K P KW+ AKKK + + K +E +G + +A I TD
Sbjct: 296 PKPKPPTKWEAFAKKKGIQKKKKDKVLYDEQSGTWKRRYGYDRANDEDAVPIIEAKETDD 475
Query: 455 PVPIDLATPKHSEGKMSNAQRNNVL--LSEGVKSNEQPTETPVQKSVNPIKAPSIDPTLP 512
P A K ++ + Q N L L E K P+ + + PI P
Sbjct: 476 PTEDPFAKRKENKRNRVDKQEKNRLQNLKEAAKFGALPSHVQLAATALPITGTQAAPKKV 655
Query: 513 TDQP---VPIDLATPKHSEGKMSK 533
T V AT S GK K
Sbjct: 656 TKDELGNVAGIAATSTASGGKFDK 727
>AV419591
Length = 276
Score = 31.6 bits (70), Expect = 0.37
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 158 LATVCTEPPAVQGGVLPEPKPKEPCSTEHPRVCPEPPLGLAIPIDPEKNRKEAEPNE 214
LA C++PP V P P+P+ P P V P PP L P+ + + PN+
Sbjct: 110 LAVPCSQPPVVPRPP-PLPQPRLPVRCSQPPVVPRPP-PLPQPLFSPVEDEPSNPNQ 274
>TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), partial (7%)
Length = 528
Score = 31.6 bits (70), Expect = 0.37
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 93 PVPDQRP----AKTHRKKKKKETVLEPQPEPEPEPKETSNTDHSEPTQLCSVKKKKKRKG 148
PV D+ P ++ +KKKKK E ++ D+ T+ KKKKK K
Sbjct: 90 PVADEAPNSPELQSEKKKKKKNKDKHQNGEKTSPKRKLEELDNQNGTESEKKKKKKKEKH 269
Query: 149 AESNEAVAE 157
+E AE
Sbjct: 270 DNKSEENAE 296
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.306 0.126 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,470,044
Number of Sequences: 28460
Number of extensions: 177543
Number of successful extensions: 1521
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of query: 586
length of database: 4,897,600
effective HSP length: 95
effective length of query: 491
effective length of database: 2,193,900
effective search space: 1077204900
effective search space used: 1077204900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0148.5