BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0148.3
(448 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain,... 923 0.0
TC8038 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soy... 876 0.0
TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain... 838 0.0
TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F... 600 e-172
TC13837 homologue to GB|BAB64211.1|15408819|AP003631 tubulin bet... 382 e-107
TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, c... 380 e-106
TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F... 352 9e-98
TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain... 342 6e-95
TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain... 258 1e-69
TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%) 203 5e-53
TC15547 homologue to UP|TBB_CICAR (Q39445) Tubulin beta chain, p... 187 4e-51
TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alph... 196 7e-51
AV407159 164 4e-41
TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (F... 154 2e-38
TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soy... 128 2e-30
BF177912 80 7e-16
TC8127 homologue to UP|Q9SQ71 (Q9SQ71) Alpha-tubulin (Fragment),... 79 2e-15
TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Eug... 67 6e-12
BP037355 56 1e-08
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 30 0.62
>TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain, complete
Length = 1689
Score = 923 bits (2386), Expect = 0.0
Identities = 448/448 (100%), Positives = 448/448 (100%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV
Sbjct: 115 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 294
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 295 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 474
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 475 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 654
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
Sbjct: 655 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 834
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM
Sbjct: 835 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 1014
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG 360
CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG
Sbjct: 1015CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG 1194
Query: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 1195LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 1374
Query: 421 EYQQYQDATADDEGYDYEDEDEVQEEDS 448
EYQQYQDATADDEGYDYEDEDEVQEEDS
Sbjct: 1375EYQQYQDATADDEGYDYEDEDEVQEEDS 1458
>TC8038 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soybean
{Glycine max;} , complete
Length = 1685
Score = 876 bits (2263), Expect = 0.0
Identities = 424/446 (95%), Positives = 438/446 (98%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEVVCAEHGID TG+Y G++++QLER+NVYYNEASCGRFV
Sbjct: 112 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFV 291
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 292 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 471
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 472 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 651
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
Sbjct: 652 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 831
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRAL+VPELTQQMWD+KNMM
Sbjct: 832 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALSVPELTQQMWDSKNMM 1011
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG 360
CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKSTVCDIPPTG
Sbjct: 1012CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTG 1191
Query: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 1192LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 1371
Query: 421 EYQQYQDATADDEGYDYEDEDEVQEE 446
EYQQY DATAD++ Y+ E+E E + E
Sbjct: 1372EYQQYPDATADEDEYE-EEEGEYEPE 1446
>TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain (Beta-3
tubulin), complete
Length = 2208
Score = 838 bits (2165), Expect = 0.0
Identities = 400/442 (90%), Positives = 423/442 (95%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 60
MREILH+Q GQCGNQIG KFWEV+C EHGID +G Y GN+ +QLERVNVYYNEAS GR+V
Sbjct: 66 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDQSGSYVGNSHLQLERVNVYYNEASGGRYV 245
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDS+RSGPYG+IFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 246 PRAVLMDLEPGTMDSLRSGPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 425
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQ+CHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 426 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 605
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLS+HQLVENADECMVLDNEALYDICFRTLKLT PSFGDLNHLIS TMSGVTCCL
Sbjct: 606 EPYNATLSIHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 785
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LT+PELTQQMWDA+NMM
Sbjct: 786 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSSLTIPELTQQMWDARNMM 965
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG 360
CAADPRHGRYLTASAMFRGKMSTKEVD+QMINVQNKNSSYFVEWIPNNVKS+VCDIPPTG
Sbjct: 966 CAADPRHGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTG 1145
Query: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M+STFIGNSTSIQEMFRRVSEQFT MF+RKAFLHWYT EGMDEMEFTEAESNMNDLV+
Sbjct: 1146LSMSSTFIGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTAEGMDEMEFTEAESNMNDLVA 1325
Query: 421 EYQQYQDATADDEGYDYEDEDE 442
EYQQYQDATA +E E+E+E
Sbjct: 1326EYQQYQDATAVEEEEGDEEEEE 1391
>TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
partial (75%)
Length = 985
Score = 600 bits (1547), Expect = e-172
Identities = 285/304 (93%), Positives = 298/304 (97%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEV+C EHGID +G+Y G+ ++QLER+NVYYNEA+ GR+V
Sbjct: 72 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV 251
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 252 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 431
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 432 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 611
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+FGDLNHL+SATMSGVTCCL
Sbjct: 612 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLMSATMSGVTCCL 791
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMM
Sbjct: 792 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 971
Query: 301 CAAD 304
CAAD
Sbjct: 972 CAAD 983
>TC13837 homologue to GB|BAB64211.1|15408819|AP003631 tubulin beta-4 chain
{Oryza sativa (japonica cultivar-group);}, partial (42%)
Length = 627
Score = 382 bits (981), Expect = e-107
Identities = 181/189 (95%), Positives = 186/189 (97%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIG+KFWEVVC EHG+D TGRY GN+D+QLERVNVYYNEASCGRFV
Sbjct: 61 MREILHIQGGQCGNQIGSKFWEVVCDEHGLDPTGRYVGNSDLQLERVNVYYNEASCGRFV 240
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 241 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 420
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 421 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 600
Query: 181 EPYNATLSV 189
EPYNATLSV
Sbjct: 601 EPYNATLSV 627
>TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, complete
Length = 1907
Score = 380 bits (977), Expect = e-106
Identities = 183/449 (40%), Positives = 281/449 (61%), Gaps = 10/449 (2%)
Frame = +2
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQL--ERVNVYYNEASCGR 58
MRE + + GQ G Q+G WE+ C EHGI G+ + + + N +++E G+
Sbjct: 224 MRECISVHIGQAGIQVGNACWELYCLEHGIGPDGQMPSDKTVGGGDDAFNTFFSETGAGK 403
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD
Sbjct: 404 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 583
Query: 119 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178
+RK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+V+PSP+VS +
Sbjct: 584 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 763
Query: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + P++ +LN LIS +S +T
Sbjct: 764 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 943
Query: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298
LRF G LN D+ + NL+P+PR+HF + +AP+ S + L+V E+T ++ +
Sbjct: 944 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 1123
Query: 299 MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP 358
MM DPRHG+Y+ M+RG + K+V+ + +++ K + FV+W P K + PP
Sbjct: 1124MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGSIKTKRTIQFVDWCPTGFKCGINYQPP 1303
Query: 359 T--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
T ++ A I NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 1304TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDVKFDLMYSKRAFVHWYVGEGMEEGEFSE 1483
Query: 411 AESNMNDLVSEYQQYQDATADDEGYDYED 439
A ++ L +Y++ + + D ED
Sbjct: 1484AREDLAALEKDYEEVGAESGEGGDDDIED 1570
>TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
partial (44%)
Length = 600
Score = 352 bits (902), Expect = 9e-98
Identities = 165/179 (92%), Positives = 174/179 (97%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y G++++QLER+NVYYNEAS GR+V
Sbjct: 64 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYV 243
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 244 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 423
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP VSDTV
Sbjct: 424 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPXVSDTV 600
>TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain (Alpha-3
tubulin), complete
Length = 1615
Score = 342 bits (878), Expect = 6e-95
Identities = 178/452 (39%), Positives = 269/452 (59%), Gaps = 15/452 (3%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQL---ERVNVYYNEASCG 57
MREI+ I GQ G Q+G WE+ C EHGI G ++ + + N +++E G
Sbjct: 105 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSG 284
Query: 58 RFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
+ VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D L
Sbjct: 285 KHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 464
Query: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
D VRK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 465 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 644
Query: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + P++ +LN LIS +S +T
Sbjct: 645 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 824
Query: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAK 297
LRF G +N D+ + NL+P+PR+HF + +AP+ S + L+VPE+T +++
Sbjct: 825 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPS 1004
Query: 298 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK------- 350
+MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K
Sbjct: 1005SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGIHYQP 1184
Query: 351 -STVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQF--TAMFRRKAFLHWYTGEGMDEME 407
S V P ++ A I N ++ E+F R+ QF T L + G G +
Sbjct: 1185PSVVPGGDPAKVQRAVCMIRNHPAVAEVFSRLDPQFDLTVCPEGPCPLVCW*GYGRRGV- 1361
Query: 408 FTEAESNMNDLVSEYQQYQDATADD--EGYDY 437
T+A ++ L +Y++ ADD EG DY
Sbjct: 1362LTKAREDLAALEKDYEEVGAEGADDEEEGEDY 1457
>TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain (Beta-7
tubulin), partial (30%)
Length = 659
Score = 258 bits (659), Expect = 1e-69
Identities = 125/133 (93%), Positives = 130/133 (96%)
Frame = +3
Query: 309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFI 368
RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFI
Sbjct: 3 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI 182
Query: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDA
Sbjct: 183 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 362
Query: 429 TADDEGYDYEDED 441
TADDE Y+ E+E+
Sbjct: 363 TADDEEYEEEEEE 401
>TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%)
Length = 591
Score = 203 bits (516), Expect = 5e-53
Identities = 96/142 (67%), Positives = 118/142 (82%)
Frame = +3
Query: 304 DPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKM 363
DPR+GRYLTASA FRGK+STKEV+EQM +Q KNS F++WIPN +K++VCD+ PTG M
Sbjct: 9 DPRNGRYLTASAYFRGKVSTKEVEEQMDAIQTKNSGQFIDWIPNAIKASVCDVAPTGETM 188
Query: 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423
++ FIGNST+IQ++F+RV F+AMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSE Q
Sbjct: 189 SAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSELQ 368
Query: 424 QYQDATADDEGYDYEDEDEVQE 445
QY+ A+ + E E+EDE E
Sbjct: 369 QYEAASVEGE----EEEDEYAE 422
>TC15547 homologue to UP|TBB_CICAR (Q39445) Tubulin beta chain, partial
(27%)
Length = 673
Score = 187 bits (475), Expect(2) = 4e-51
Identities = 90/107 (84%), Positives = 99/107 (92%), Gaps = 1/107 (0%)
Frame = +2
Query: 341 FVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400
FVEWIPNNVKS+VCDIPP LKM+STFIGNSTSIQEMFRRVSEQFTAM+RRKAFLHWYTG
Sbjct: 47 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTG 226
Query: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAD-DEGYDYEDEDEVQEE 446
EGMDEMEFTEAESNMNDLV+EYQQYQDATAD +E YD +E+ +E+
Sbjct: 227 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDYDEGEENAYEEQ 367
Score = 31.2 bits (69), Expect(2) = 4e-51
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 326 VDEQMINVQNKNSS 339
VDEQMINVQNKNSS
Sbjct: 1 VDEQMINVQNKNSS 42
>TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alpha-5 chain,
partial (44%)
Length = 739
Score = 196 bits (498), Expect = 7e-51
Identities = 90/199 (45%), Positives = 133/199 (66%), Gaps = 2/199 (1%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQL--ERVNVYYNEASCGR 58
MRE++ I GQ G Q+G WE+ C EHGI G +T + + + N +++E G+
Sbjct: 141 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 320
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
VPRA+ +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E+++ LD
Sbjct: 321 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 500
Query: 119 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178
RK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 501 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 680
Query: 179 VVEPYNATLSVHQLVENAD 197
VVEPYN+ LS H L+E+ D
Sbjct: 681 VVEPYNSVLSTHSLLEHTD 737
>AV407159
Length = 301
Score = 164 bits (414), Expect = 4e-41
Identities = 75/96 (78%), Positives = 86/96 (89%), Gaps = 3/96 (3%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQG---NTDMQLERVNVYYNEASCG 57
MREILHIQGGQCGNQIG+K+WEV+C EHGID TG++ G +TD QLER+NVYYNEAS G
Sbjct: 12 MREILHIQGGQCGNQIGSKWWEVICDEHGIDHTGKFTGTDSDTDFQLERINVYYNEASAG 191
Query: 58 RFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFG 93
R+VPRAVLMDLEPGTM+S+RSGPYG+I RPDN VFG
Sbjct: 192 RYVPRAVLMDLEPGTMESIRSGPYGKIVRPDNVVFG 299
>TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (Fragment),
partial (34%)
Length = 797
Score = 154 bits (390), Expect = 2e-38
Identities = 75/83 (90%), Positives = 81/83 (97%)
Frame = +2
Query: 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423
ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ
Sbjct: 209 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 388
Query: 424 QYQDATADDEGYDYEDEDEVQEE 446
QYQDATA+D+G +YEDE+E ++E
Sbjct: 389 QYQDATAEDDG-EYEDEEEEEQE 454
Score = 129 bits (323), Expect = 1e-30
Identities = 71/107 (66%), Positives = 76/107 (70%), Gaps = 9/107 (8%)
Frame = +1
Query: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDI P
Sbjct: 16 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPK 195
Query: 360 GLKMASTFIG----NSTSIQEMFRRV-----SEQFTAMFRRKAFLHW 397
GL M NS ++QE R V E F A+ +HW
Sbjct: 196 GLSMGIHIHWQLNLNSGNVQESERAVHCHV*EEGFLAL------VHW 318
>TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soybean
{Glycine max;} , partial (15%)
Length = 699
Score = 128 bits (321), Expect = 2e-30
Identities = 59/67 (88%), Positives = 65/67 (96%)
Frame = +2
Query: 376 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGY 435
EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD++ Y
Sbjct: 2 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY 181
Query: 436 DYEDEDE 442
+ E+E+E
Sbjct: 182 EEEEEEE 202
>BF177912
Length = 391
Score = 80.1 bits (196), Expect = 7e-16
Identities = 38/96 (39%), Positives = 56/96 (57%), Gaps = 2/96 (2%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQL--ERVNVYYNEASCGR 58
MRE + I GQ G Q+G WE+ C EHGI G+ + + + N +++E G+
Sbjct: 99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 278
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ 94
VPRAV +DLEP +D VR+G Y Q+F P+ + G+
Sbjct: 279 HVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGK 386
>TC8127 homologue to UP|Q9SQ71 (Q9SQ71) Alpha-tubulin (Fragment), partial
(89%)
Length = 597
Score = 78.6 bits (192), Expect = 2e-15
Identities = 40/112 (35%), Positives = 63/112 (55%), Gaps = 10/112 (8%)
Frame = +2
Query: 336 KNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTA 387
K + FV+W P K + PP+ ++ A I N+T++ E+F R+ +F
Sbjct: 2 KRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 181
Query: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADD--EGYDY 437
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ ADD EG DY
Sbjct: 182 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEEEGEDY 337
>TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Euglena
gracilis {Euglena gracilis;} , partial (16%)
Length = 494
Score = 67.0 bits (162), Expect = 6e-12
Identities = 28/72 (38%), Positives = 48/72 (65%), Gaps = 4/72 (5%)
Frame = +3
Query: 368 IGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY-- 425
I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 9 ISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 188
Query: 426 --QDATADDEGY 435
++ D+EGY
Sbjct: 189 EGEEGEEDEEGY 224
>BP037355
Length = 422
Score = 56.2 bits (134), Expect = 1e-08
Identities = 26/58 (44%), Positives = 35/58 (59%)
Frame = +2
Query: 53 EASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 110
E G+ VPRAV +DLEP ++ V +G Y Q+F P+ + G+ A NN A GH T A
Sbjct: 167 ETGSGKHVPRAVFVDLEPTVINEVCAGTYRQLFHPEQLISGKEDAANNLAGGHCTGNA 340
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 30.4 bits (67), Expect = 0.62
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGYDYEDEDEVQEE 446
W+TGE ++ +F + E + D + + +D D+E D +D+DE EE
Sbjct: 731 WFTGEA-EQSDFEDIEEDDED--GDEDEDEDDDDDEEEEDDDDDDEDDEE 871
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,150,110
Number of Sequences: 28460
Number of extensions: 90140
Number of successful extensions: 538
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of query: 448
length of database: 4,897,600
effective HSP length: 93
effective length of query: 355
effective length of database: 2,250,820
effective search space: 799041100
effective search space used: 799041100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0148.3