BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0147a.1
(258 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9005 similar to UP|Q84L76 (Q84L76) Expansin precursor, partial... 494 e-141
TC12913 homologue to UP|Q84L76 (Q84L76) Expansin precursor, part... 433 e-122
TC7907 homologue to UP|O81133 (O81133) Expansin, partial (97%) 375 e-105
TC17703 homologue to UP|CAC19183 (CAC19183) Expansin, partial (82%) 199 5e-81
TC8872 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, partial... 280 2e-76
TC15173 similar to UP|AAR09168 (AAR09168) Alpha-expansin 1, part... 246 4e-66
BI418390 245 6e-66
BP031258 243 2e-65
TC12840 similar to PIR|T02010|T02010 expansin homolog T15B16.16 ... 212 4e-56
TC19660 similar to GB|BAB09383.1|9758857|AB010694 expansin-like ... 196 5e-56
AV417335 204 2e-53
AV774298 152 9e-49
AU251791 179 5e-46
TC15478 homologue to UP|AAQ08016 (AAQ08016) Expansin, partial (33%) 158 1e-39
TC15301 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 prec... 131 1e-31
BP041103 130 2e-31
AV420969 120 2e-28
TC19822 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 prec... 109 4e-25
AV411807 97 2e-21
TC9933 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precu... 91 2e-19
>TC9005 similar to UP|Q84L76 (Q84L76) Expansin precursor, partial (92%)
Length = 1277
Score = 494 bits (1271), Expect = e-141
Identities = 228/255 (89%), Positives = 242/255 (94%)
Frame = +1
Query: 4 IVLLCISSLVSLFAATTARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYTQGY 63
+VLLC +SLV+LF T+ARIPGVY+GG WQSAHATFYGGSDASGTMGGACGYGNLY+QGY
Sbjct: 55 MVLLCAASLVTLFVTTSARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGY 234
Query: 64 GVNTAALSTALFNNGLSCGACFEMKCDQDPRWCNPGNPSILVTATNFCPPNFAQPSDNGG 123
GVNTAALSTALFNNGLSCGACFE+KCDQDPRWCNPG+PSI+VTATNFCPPN AQPSD+GG
Sbjct: 235 GVNTAALSTALFNNGLSCGACFEIKCDQDPRWCNPGSPSIIVTATNFCPPNLAQPSDDGG 414
Query: 124 WCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYFNLVLITNV 183
WCNPPR HFDLAMPMFLKIAQYRAGIVPV YRRVPCRK GGIRFTINGFRYFNLVLI+NV
Sbjct: 415 WCNPPRTHFDLAMPMFLKIAQYRAGIVPVTYRRVPCRKKGGIRFTINGFRYFNLVLISNV 594
Query: 184 AGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRRTSTSWNVAPA 243
AGAGDIVRVSVKG N+ W SMSRNWGQNWQSNS LVGQ LSFRVTGSDRRTSTSWNVAP+
Sbjct: 595 AGAGDIVRVSVKGTNSGWNSMSRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPS 774
Query: 244 NWQFGQTFTGKNFRV 258
+WQFGQTFTGKNFRV
Sbjct: 775 HWQFGQTFTGKNFRV 819
>TC12913 homologue to UP|Q84L76 (Q84L76) Expansin precursor, partial (78%)
Length = 606
Score = 433 bits (1113), Expect = e-122
Identities = 201/201 (100%), Positives = 201/201 (100%)
Frame = +2
Query: 56 GNLYTQGYGVNTAALSTALFNNGLSCGACFEMKCDQDPRWCNPGNPSILVTATNFCPPNF 115
GNLYTQGYGVNTAALSTALFNNGLSCGACFEMKCDQDPRWCNPGNPSILVTATNFCPPNF
Sbjct: 2 GNLYTQGYGVNTAALSTALFNNGLSCGACFEMKCDQDPRWCNPGNPSILVTATNFCPPNF 181
Query: 116 AQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYF 175
AQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYF
Sbjct: 182 AQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYF 361
Query: 176 NLVLITNVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRRTS 235
NLVLITNVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRRTS
Sbjct: 362 NLVLITNVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRRTS 541
Query: 236 TSWNVAPANWQFGQTFTGKNF 256
TSWNVAPANWQFGQTFTGKNF
Sbjct: 542 TSWNVAPANWQFGQTFTGKNF 604
>TC7907 homologue to UP|O81133 (O81133) Expansin, partial (97%)
Length = 1313
Score = 375 bits (963), Expect = e-105
Identities = 175/255 (68%), Positives = 199/255 (77%), Gaps = 2/255 (0%)
Frame = +2
Query: 4 IVLLCISSLVSLFAATTARIPGVYS--GGPWQSAHATFYGGSDASGTMGGACGYGNLYTQ 61
+ ++ S++ +F + G Y GG WQ HATFYGG DASGTMGGACGYGNLY+Q
Sbjct: 80 MAIVATSAISLIFFLLNLCLRGTYGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQ 259
Query: 62 GYGVNTAALSTALFNNGLSCGACFEMKCDQDPRWCNPGNPSILVTATNFCPPNFAQPSDN 121
GYG NTAALSTALFNNGLSCG+C+EM+CD DPRWC PG SILVTATNFCPPN+A + N
Sbjct: 260 GYGTNTAALSTALFNNGLSCGSCYEMRCDSDPRWCLPG--SILVTATNFCPPNYALSNSN 433
Query: 122 GGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYFNLVLIT 181
GGWCNPP HFDLA P FLKIAQY+AGIVP+++RRV C K GGIRFTING YFNLVL+T
Sbjct: 434 GGWCNPPLQHFDLAEPAFLKIAQYKAGIVPISFRRVSCVKKGGIRFTINGHSYFNLVLVT 613
Query: 182 NVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRRTSTSWNVA 241
NV GAGD+ VS+KG T W +MSRNWGQNWQSNS L GQ+LSF+VT SD RT S N
Sbjct: 614 NVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTIISNNAV 793
Query: 242 PANWQFGQTFTGKNF 256
PA WQFGQTF+G F
Sbjct: 794 PAGWQFGQTFSGGQF 838
>TC17703 homologue to UP|CAC19183 (CAC19183) Expansin, partial (82%)
Length = 687
Score = 199 bits (505), Expect(2) = 5e-81
Identities = 94/131 (71%), Positives = 105/131 (79%)
Frame = +1
Query: 27 YSGGPWQSAHATFYGGSDASGTMGGACGYGNLYTQGYGVNTAALSTALFNNGLSCGACFE 86
Y G W +AHATFYGGSDASGTMGGACGYGNL +QGYG NTAALSTALFN+GLSCGACF+
Sbjct: 67 YGDGGWTNAHATFYGGSDASGTMGGACGYGNLISQGYGTNTAALSTALFNSGLSCGACFQ 246
Query: 87 MKCDQDPRWCNPGNPSILVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYR 146
+KC DP+WC PG SI+VTATN CPP GG C+PP HFDL+ P+F IAQY+
Sbjct: 247 IKCVNDPQWCLPG--SIVVTATNVCPP--------GGGCDPPNHHFDLSQPIFQHIAQYK 396
Query: 147 AGIVPVAYRRV 157
AGIVPVAYRRV
Sbjct: 397 AGIVPVAYRRV 429
Score = 118 bits (296), Expect(2) = 5e-81
Identities = 55/84 (65%), Positives = 65/84 (76%)
Frame = +2
Query: 159 CRKSGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVL 218
CR+ GIRFTING YFNLVL+TNV GAGD+ V++KG T W +MSRNWGQNWQSNS L
Sbjct: 434 CRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYL 613
Query: 219 VGQTLSFRVTGSDRRTSTSWNVAP 242
GQ+LSF VT S+ + S+NVAP
Sbjct: 614 NGQSLSFVVTTSNGHSVVSFNVAP 685
>TC8872 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, partial (82%)
Length = 729
Score = 280 bits (716), Expect = 2e-76
Identities = 130/180 (72%), Positives = 147/180 (81%)
Frame = +2
Query: 29 GGPWQSAHATFYGGSDASGTMGGACGYGNLYTQGYGVNTAALSTALFNNGLSCGACFEMK 88
GG W AHATFYGG DASGTMGGACGYGNLY+QGYG NTAALSTA+FNNGLSCG+C+E++
Sbjct: 143 GGGWTDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGSCYEVR 322
Query: 89 CDQDPRWCNPGNPSILVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAG 148
C D RWC PG SI+VTATNFCPPN A P++ GGWCNPP HFDLA P+FL+IAQY+AG
Sbjct: 323 CVNDHRWCLPG--SIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAG 496
Query: 149 IVPVAYRRVPCRKSGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGGNTAWMSMSRNW 208
IVPV+YRRV CR+ GGIRFTING YFNLVLITNV GAGD+ ++KG SRNW
Sbjct: 497 IVPVSYRRVACRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKG--------SRNW 652
Score = 53.5 bits (127), Expect = 3e-08
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +3
Query: 189 IVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSF 225
IVR+S KG T W MS NWGQNWQSNS L GQ+LSF
Sbjct: 621 IVRLS-KGQETGWSPMSTNWGQNWQSNSYLNGQSLSF 728
>TC15173 similar to UP|AAR09168 (AAR09168) Alpha-expansin 1, partial (50%)
Length = 898
Score = 246 bits (627), Expect = 4e-66
Identities = 114/132 (86%), Positives = 122/132 (92%)
Frame = +2
Query: 127 PPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYFNLVLITNVAGA 186
PPRPH DLAMPMFLKIA+YR+GIVPVAYRRVPCRK GGIRFTINGFRYFNLVLI+NVAGA
Sbjct: 2 PPRPHSDLAMPMFLKIAEYRSGIVPVAYRRVPCRKPGGIRFTINGFRYFNLVLISNVAGA 181
Query: 187 GDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRRTSTSWNVAPANWQ 246
GD+VR VKG T WM MSRNWG+NWQSN+VLVGQ LSFRVT SDRRTSTSWN+APA+WQ
Sbjct: 182 GDVVRTYVKGTRTGWMPMSRNWGRNWQSNAVLVGQALSFRVTASDRRTSTSWNIAPAHWQ 361
Query: 247 FGQTFTGKNFRV 258
FGQTFTGKNFRV
Sbjct: 362 FGQTFTGKNFRV 397
>BI418390
Length = 471
Score = 245 bits (625), Expect = 6e-66
Identities = 109/130 (83%), Positives = 117/130 (89%)
Frame = +1
Query: 12 LVSLFAATTARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYTQGYGVNTAALS 71
L+ L + A+IPGVY GG WQ+AHATFYGGSDASGTMGGACGYGNLY+QGYGVNTAALS
Sbjct: 82 LLLLPTSIQAKIPGVYPGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALS 261
Query: 72 TALFNNGLSCGACFEMKCDQDPRWCNPGNPSILVTATNFCPPNFAQPSDNGGWCNPPRPH 131
TALFNNGLSCGACFE+KC DP WC+ G+PSI VTATNFCPPNFAQ SDNGGWCNPPRPH
Sbjct: 262 TALFNNGLSCGACFELKCANDPSWCHAGSPSIFVTATNFCPPNFAQASDNGGWCNPPRPH 441
Query: 132 FDLAMPMFLK 141
FDLAMPMFLK
Sbjct: 442 FDLAMPMFLK 471
>BP031258
Length = 526
Score = 243 bits (620), Expect = 2e-65
Identities = 108/137 (78%), Positives = 121/137 (87%)
Frame = +1
Query: 30 GPWQSAHATFYGGSDASGTMGGACGYGNLYTQGYGVNTAALSTALFNNGLSCGACFEMKC 89
G W+SAHATFYGG DASGTMGGACGYGNLY+QGYG +TAALSTALFNNGLSCG+C+EM+C
Sbjct: 121 GGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGSCYEMRC 300
Query: 90 DQDPRWCNPGNPSILVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGI 149
D DPRWC PG SI+VTATNFCPPN + ++NGGWCNPP HFD+A P FL+IAQYRAGI
Sbjct: 301 DDDPRWCKPG--SIIVTATNFCPPNPSLANNNGGWCNPPLQHFDMAEPAFLQIAQYRAGI 474
Query: 150 VPVAYRRVPCRKSGGIR 166
VPVA+RRVPC K GGIR
Sbjct: 475 VPVAFRRVPCAKKGGIR 525
>TC12840 similar to PIR|T02010|T02010 expansin homolog T15B16.16 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(60%)
Length = 648
Score = 212 bits (540), Expect = 4e-56
Identities = 98/149 (65%), Positives = 120/149 (79%), Gaps = 1/149 (0%)
Frame = +3
Query: 107 ATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIR 166
ATNFCPPN A P+DNGGWCNPPRPHFD++ P F IA+YRAGIVP+ +RRV CRKSGGIR
Sbjct: 15 ATNFCPPNLALPNDNGGWCNPPRPHFDMSQPAFETIAKYRAGIVPIFHRRVRCRKSGGIR 194
Query: 167 FTINGFRYFNLVLITNVAGAGDIVRVSVKGGN-TAWMSMSRNWGQNWQSNSVLVGQTLSF 225
FTING YF LVLI+NV GAG+I V +KG ++W +MSRNWG NWQS S L GQ+LSF
Sbjct: 195 FTINGRDYFELVLISNVGGAGEISMVWIKGSKMSSWETMSRNWGVNWQSLSYLNGQSLSF 374
Query: 226 RVTGSDRRTSTSWNVAPANWQFGQTFTGK 254
R+ + +T T++NVAP++W+FGQ+FT K
Sbjct: 375 RIQLRNGKTRTAYNVAPSSWKFGQSFTSK 461
>TC19660 similar to GB|BAB09383.1|9758857|AB010694 expansin-like protein
{Arabidopsis thaliana;} , partial (66%)
Length = 652
Score = 196 bits (499), Expect(2) = 5e-56
Identities = 91/152 (59%), Positives = 111/152 (72%)
Frame = +2
Query: 61 QGYGVNTAALSTALFNNGLSCGACFEMKCDQDPRWCNPGNPSILVTATNFCPPNFAQPSD 120
QGYG++T ALSTALFNNGL+CGAC E+KC + WC PS+LVTATNFCPPN+ +
Sbjct: 200 QGYGLHTTALSTALFNNGLACGACIEIKC-VNSAWCRKDAPSVLVTATNFCPPNYTKTV- 373
Query: 121 NGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYFNLVLI 180
G CNPP+ HFDL + MF KIA YRAG+VPV RRVPC K GG++F I G YF +VL+
Sbjct: 374 -GVRCNPPQKHFDLTVFMFTKIAWYRAGVVPVQARRVPCHKIGGVKFEIKGNPYFLMVLV 550
Query: 181 TNVAGAGDIVRVSVKGGNTAWMSMSRNWGQNW 212
NV AGD+ +S+KG NT W+ M+ NWGQ W
Sbjct: 551 YNVGNAGDVSSMSIKGSNTGWLQMAHNWGQIW 646
Score = 37.4 bits (85), Expect(2) = 5e-56
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1
Query: 35 AHATFYGGSDASGTMGGACGYGNLY 59
A ATFYG GTM GACGYG+L+
Sbjct: 121 ARATFYGDFKGIGTMQGACGYGDLW 195
>AV417335
Length = 428
Score = 204 bits (518), Expect = 2e-53
Identities = 90/142 (63%), Positives = 109/142 (76%)
Frame = +3
Query: 107 ATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIR 166
ATNFCPPNFA P++NGGWCNPP HFD+A P + KI YR GIVPV ++RVPC+K GG+R
Sbjct: 3 ATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVR 182
Query: 167 FTINGFRYFNLVLITNVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFR 226
F++NG YF LV+I+NVAGAG I VS+KG T W+SMSRNWG NWQSN+ L GQ+LSFR
Sbjct: 183 FSVNGRDYFELVMISNVAGAGSIQSVSIKGSKTGWLSMSRNWGANWQSNAFLNGQSLSFR 362
Query: 227 VTGSDRRTSTSWNVAPANWQFG 248
+T +D T +V P NW FG
Sbjct: 363 ITTTDGETRVFPDVVPGNWAFG 428
>AV774298
Length = 482
Score = 152 bits (385), Expect(2) = 9e-49
Identities = 64/80 (80%), Positives = 73/80 (91%)
Frame = +2
Query: 77 NGLSCGACFEMKCDQDPRWCNPGNPSILVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAM 136
+GLSCGACFE+KC D +WC+ G+PSI +TATNFCPPN+A P+DNGGWCNPPRP FDLAM
Sbjct: 80 SGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPDFDLAM 259
Query: 137 PMFLKIAQYRAGIVPVAYRR 156
PMFLKIA+YRAGIVPVAYRR
Sbjct: 260 PMFLKIAEYRAGIVPVAYRR 319
Score = 57.0 bits (136), Expect(2) = 9e-49
Identities = 25/26 (96%), Positives = 26/26 (99%)
Frame = +1
Query: 51 GACGYGNLYTQGYGVNTAALSTALFN 76
GACGYGNLY+QGYGVNTAALSTALFN
Sbjct: 1 GACGYGNLYSQGYGVNTAALSTALFN 78
>AU251791
Length = 343
Score = 179 bits (453), Expect = 5e-46
Identities = 82/113 (72%), Positives = 92/113 (80%)
Frame = +1
Query: 122 GGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYFNLVLIT 181
GGWCNPP HFDL+ P F +IAQY+AGIVPVAYRRVPC+K GGI FTING YFNLVLIT
Sbjct: 4 GGWCNPPLQHFDLSQPAFQQIAQYKAGIVPVAYRRVPCQKKGGISFTINGHSYFNLVLIT 183
Query: 182 NVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRRT 234
NV G+GD+ VS+KG T W MSRNWGQNWQSN+ L GQ+LSF+VT SD RT
Sbjct: 184 NVGGSGDVQAVSIKGSRTDWQPMSRNWGQNWQSNANLNGQSLSFKVTTSDGRT 342
>TC15478 homologue to UP|AAQ08016 (AAQ08016) Expansin, partial (33%)
Length = 629
Score = 158 bits (399), Expect = 1e-39
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +1
Query: 174 YFNLVLITNVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRR 233
YFNLVLITNVAGAGDIVR SVKG +T WMSMSRNWGQNWQSNSVLVGQ+LSFRVT SDRR
Sbjct: 1 YFNLVLITNVAGAGDIVRTSVKGSDTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRR 180
Query: 234 TSTSWNVAPANWQFGQTFTGKNFRV 258
TSTS N+ P++WQFGQTFTGKNFRV
Sbjct: 181 TSTSLNIVPSHWQFGQTFTGKNFRV 255
>TC15301 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precursor
(At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22), partial (45%)
Length = 507
Score = 131 bits (330), Expect = 1e-31
Identities = 58/103 (56%), Positives = 71/103 (68%)
Frame = +1
Query: 32 WQSAHATFYGGSDASGTMGGACGYGNLYTQGYGVNTAALSTALFNNGLSCGACFEMKCDQ 91
W+SA AT+Y +D +GGACGYG+L GYG+ TA LS LF G CGACFE++C +
Sbjct: 193 WRSARATYYAAADPRDAVGGACGYGDLLKTGYGMATAGLSETLFERGQICGACFELRCVE 372
Query: 92 DPRWCNPGNPSILVTATNFCPPNFAQPSDNGGWCNPPRPHFDL 134
D RWC PG SI+VTATNFC PN+ ++ GG CNPP HF L
Sbjct: 373 DSRWCLPGT-SIIVTATNFCAPNYGFTAEGGGHCNPPNNHFVL 498
>BP041103
Length = 531
Score = 130 bits (327), Expect = 2e-31
Identities = 62/101 (61%), Positives = 69/101 (67%)
Frame = -1
Query: 156 RVPCRKSGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSN 215
RV CR+ GGIRFTI+G F VLI+N AG GDIV V KG T W+ M RNWGQNW N
Sbjct: 531 RVKCRREGGIRFTISGSGIFISVLISNAAGMGDIVAVKTKGSRTGWLPMGRNWGQNWHLN 352
Query: 216 SVLVGQTLSFRVTGSDRRTSTSWNVAPANWQFGQTFTGKNF 256
++L Q LSF VT SD T T +NVAP NW FGQTF GK F
Sbjct: 351 ALLQNQPLSFEVTSSDGITLTCYNVAPKNWSFGQTFEGKQF 229
>AV420969
Length = 219
Score = 120 bits (302), Expect = 2e-28
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +1
Query: 1 MAGIVLLCISSLVSLFAATTARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGN 57
MAGIVLLCISSLVSLFAATTARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGN
Sbjct: 49 MAGIVLLCISSLVSLFAATTARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGN 219
>TC19822 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precursor
(At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22), partial (27%)
Length = 532
Score = 109 bits (273), Expect = 4e-25
Identities = 59/127 (46%), Positives = 77/127 (60%), Gaps = 8/127 (6%)
Frame = -1
Query: 28 SGGPWQSAHATFYGGSDASGTMGGACGYGNLYTQGYGVNTAALSTALFNNGLSCGACFEM 87
S W A AT Y + S ++ GACGYGN GYG TAALS ALF G CGACFE+
Sbjct: 367 SAAEWLPATATHYTAT-TSDSVDGACGYGN----GYGTATAALSQALFGRGQICGACFEL 203
Query: 88 KCDQ-------DPRWCNPGNPSILVTATNFCPPNFAQPSDN-GGWCNPPRPHFDLAMPMF 139
+C + D RWC + S++VTAT+FC PN+ +++ GG CNPP+ HF L + F
Sbjct: 202 RCVEEESATAFDRRWCVSSSTSVVVTATDFCAPNYGFDAESRGGRCNPPKQHFVLPVEAF 23
Query: 140 LKIAQYR 146
KIA ++
Sbjct: 22 EKIAIWK 2
>AV411807
Length = 401
Score = 97.4 bits (241), Expect = 2e-21
Identities = 46/84 (54%), Positives = 54/84 (63%)
Frame = +2
Query: 26 VYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYTQGYGVNTAALSTALFNNGLSCGACF 85
V+ W AHATFYG AS TMGGACGYGNL+ GYG +T ALS+ LFNNG +CG C+
Sbjct: 149 VFRPSKWALAHATFYGDETASETMGGACGYGNLFQSGYGTDTVALSSTLFNNGYACGTCY 328
Query: 86 EMKCDQDPRWCNPGNPSILVTATN 109
++KC Q C VTATN
Sbjct: 329 QIKCYQSSA-CYKNVAFTTVTATN 397
>TC9933 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precursor
(At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22), partial (24%)
Length = 552
Score = 91.3 bits (225), Expect = 2e-19
Identities = 39/63 (61%), Positives = 45/63 (70%)
Frame = +1
Query: 194 VKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRRTSTSWNVAPANWQFGQTFTG 253
VKG T W+ M RNWGQNW N++L Q LSF VTGSD +T TS+N AP +W FGQTF G
Sbjct: 1 VKGSRTGWLQMGRNWGQNWHINALLQNQPLSFEVTGSDGKTVTSYNAAPKDWSFGQTFEG 180
Query: 254 KNF 256
K F
Sbjct: 181 KQF 189
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,510,539
Number of Sequences: 28460
Number of extensions: 87624
Number of successful extensions: 513
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of query: 258
length of database: 4,897,600
effective HSP length: 88
effective length of query: 170
effective length of database: 2,393,120
effective search space: 406830400
effective search space used: 406830400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0147a.1