TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0146.2
         (687 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19341 similar to UP|Q9CAD1 (Q9CAD1) GMP synthase, partial (28%)      30  1.3
TC9063 similar to UP|Q8LFK9 (Q8LFK9) 3-dehydroquinate synthase-l...    27  8.4
TC14410 homologue to UP|Q7Y0W1 (Q7Y0W1) GL2-type homeodomain pro...    27  8.4

>TC19341 similar to UP|Q9CAD1 (Q9CAD1) GMP synthase, partial (28%)
          Length = 484

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +1

Query: 391 NSYPNASDSALPKEHHITLWRTLLS-PRVLTVGFASSDYTLCGYNPQL-VSRQFGLSQVL 448
           +S  +A+ SAL     + +WR+LLS PR            LC    +L +S+ FG + V+
Sbjct: 232 SSSASAAMSALDTRRSMVVWRSLLSTPR------------LCSPPTRLAISKLFG*AMVM 375

Query: 449 PNTLFDKSLVLYPGTIKRVSVFDKTV 474
              LF    +L PG  K  S   KT+
Sbjct: 376 KPLLFLLVSMLLPGVSKAPSPPSKTL 453


>TC9063 similar to UP|Q8LFK9 (Q8LFK9) 3-dehydroquinate synthase-like
           protein, partial (14%)
          Length = 586

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = -3

Query: 111 PNPSANDKAYLKWLDRVEGDKKQHWKDVGI 140
           P+   N K  L W D+  G  K+ W D+G+
Sbjct: 293 PHLGFNRKWVLGWEDKAWGGAKERWVDLGV 204


>TC14410 homologue to UP|Q7Y0W1 (Q7Y0W1) GL2-type homeodomain protein,
           partial (4%)
          Length = 780

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 19/53 (35%), Positives = 24/53 (44%), Gaps = 3/53 (5%)
 Frame = -2

Query: 471 DKTVQFYNKKLLNLSPFTYAPSY---YATNAFKAWWSEYWAQISKPLVDCLQC 520
           +KT    N  L N SPF    S+    AT   K+W       ISKPL   ++C
Sbjct: 710 EKTEHMINVALSNSSPFFLG*SHGSKRATPYMKSWAKWKQTPISKPLKGQIRC 552


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,903,144
Number of Sequences: 28460
Number of extensions: 213075
Number of successful extensions: 1092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of query: 687
length of database: 4,897,600
effective HSP length: 96
effective length of query: 591
effective length of database: 2,165,440
effective search space: 1279775040
effective search space used: 1279775040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)