TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0145.4
         (72 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15689 similar to UP|Q9FJQ2 (Q9FJQ2) Similarity to AP2 domain t...    46  1e-06
TC17481                                                                25  2.1
TC8390 similar to UP|ARG2_ARATH (Q9ZPF5) Probable arginase  , pa...    25  2.8
BP041961                                                               25  3.6
TC12321 similar to UP|Q15415 (Q15415) YRRM2, partial (5%)              24  4.7
TC8171 weakly similar to UP|Q9LLK8 (Q9LLK8) Ribosomal protein L2...    24  6.2
TC14727 similar to UP|Q9LT42 (Q9LT42) Genomic DNA, chromosome 3,...    23  8.0
TC10701 similar to UP|Q94A82 (Q94A82) AT5g20070/F28I16_220, part...    23  8.0
TC14675 homologue to UP|PGMU_PEA (Q9SM60) Phosphoglucomutase, cy...    23  8.0
TC14321 similar to UP|AAQ72789 (AAQ72789) 60S ribosomal protein ...    23  8.0

>TC15689 similar to UP|Q9FJQ2 (Q9FJQ2) Similarity to AP2 domain
           transcription factor, partial (15%)
          Length = 872

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = +3

Query: 1   PNLRRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKKSEKPQK 54
           P+L++   + V G+FG+YKPL SSVD+KL+AICE L   Q   K +  S +  K
Sbjct: 93  PHLKK---AHVSGEFGDYKPLPSSVDSKLKAICESLDGKQGNPKMQFNSVEDVK 245


>TC17481 
          Length = 500

 Score = 25.4 bits (54), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 41  KQGKTEKKSEKPQKKSKATASK 62
           K+G+ EKK + P K S +T SK
Sbjct: 235 KEGREEKKLQLPVKDSNSTKSK 170


>TC8390 similar to UP|ARG2_ARATH (Q9ZPF5) Probable arginase  , partial
           (91%)
          Length = 1400

 Score = 25.0 bits (53), Expect = 2.8
 Identities = 11/24 (45%), Positives = 13/24 (53%)
 Frame = +1

Query: 3   LRRHQGSSVGGDFGEYKPLHSSVD 26
           L+  QG  VGGD  EY P   + D
Sbjct: 967 LQNLQGDIVGGDVVEYNPQRDTAD 1038


>BP041961 
          Length = 424

 Score = 24.6 bits (52), Expect = 3.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 6   HQGSSVGGDFGE 17
           H+G+S GG+FGE
Sbjct: 247 HEGASAGGEFGE 212


>TC12321 similar to UP|Q15415 (Q15415) YRRM2, partial (5%)
          Length = 812

 Score = 24.3 bits (51), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 19 KPLHSSVDAKLQAICEGLAEMQKQG 43
          KP+  SVD  + A C GL   Q++G
Sbjct: 13 KPVPQSVDYLI*APCHGLQSNQREG 87


>TC8171 weakly similar to UP|Q9LLK8 (Q9LLK8) Ribosomal protein L27, partial
           (16%)
          Length = 1437

 Score = 23.9 bits (50), Expect = 6.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 33  CEGLAEMQKQGKTEKKSEKPQKKSKATASKVAPQE 67
           C  ++   K+ K       P KKSK+  S   PQE
Sbjct: 195 CRIVSRFAKKSKPRIIVSSPAKKSKSNTSLQKPQE 299


>TC14727 similar to UP|Q9LT42 (Q9LT42) Genomic DNA, chromosome 3, P1 clone:
           MOE17, partial (16%)
          Length = 1086

 Score = 23.5 bits (49), Expect = 8.0
 Identities = 16/58 (27%), Positives = 24/58 (40%), Gaps = 3/58 (5%)
 Frame = -1

Query: 15  FGEYKPLHSSVDAKLQAICEGLAEMQKQG---KTEKKSEKPQKKSKATASKVAPQEGC 69
           FG++K  H  +      +    A +Q Q    K +  S  PQK+  A      P +GC
Sbjct: 750 FGQWKKFHDYLRNFSHELAHP-ALLQIQALPLKQQHLSHPPQKRGVAQPQSYCPSQGC 580


>TC10701 similar to UP|Q94A82 (Q94A82) AT5g20070/F28I16_220, partial (32%)
          Length = 668

 Score = 23.5 bits (49), Expect = 8.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 15  FGEYKPLHSSVDAKLQAICEGL 36
           F EYK    +  AK++ +C+G+
Sbjct: 242 FAEYKKAQKTAAAKVEQMCKGV 307


>TC14675 homologue to UP|PGMU_PEA (Q9SM60) Phosphoglucomutase, cytoplasmic
           (Glucose phosphomutase) (PGM) , partial (15%)
          Length = 671

 Score = 23.5 bits (49), Expect = 8.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 40  QKQGKTEKKSEKPQKKSKATA 60
           Q++GK  K  E P+KK K  A
Sbjct: 560 QREGKKMKGKEHPRKKEKKKA 498


>TC14321 similar to UP|AAQ72789 (AAQ72789) 60S ribosomal protein L5, partial
           (98%)
          Length = 1185

 Score = 23.5 bits (49), Expect = 8.0
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
 Frame = +3

Query: 22  HSSVDAKLQAICEGLAEMQKQ-------GKTEKKSEKPQKK 55
           H S   K     +GL E+ K+         T KKSEKPQ K
Sbjct: 699 HFSEYIKRGIEADGLEELYKKVHAAIRADPTSKKSEKPQPK 821


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,064,168
Number of Sequences: 28460
Number of extensions: 8498
Number of successful extensions: 78
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of query: 72
length of database: 4,897,600
effective HSP length: 48
effective length of query: 24
effective length of database: 3,531,520
effective search space: 84756480
effective search space used: 84756480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)