TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0144.9
         (269 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP038623                                                               28  1.6
BP085958                                                               27  4.8
BP030794                                                               26  6.2
TC14757 similar to UP|O04361 (O04361) Prohibitin, complete             26  6.2
TC14324 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan pro...    26  6.2
TC19702 similar to UP|Q8LPT9 (Q8LPT9) R1, partial (11%)                26  8.1

>BP038623 
          Length = 538

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/104 (23%), Positives = 52/104 (49%), Gaps = 16/104 (15%)
 Frame = +2

Query: 141 HQVKDVGQAVSFKEAKVSAGKAQVAAMKEDFKKFTARKVLIADEISEVDIKLEE-LHREI 199
           H+ + +G      EA++S  K +   ++++FK   + +  +   I+++ +  E+ LH+E 
Sbjct: 62  HEKQTIGSGNILSEAQISFPKEET--VEQNFKATESNEQRV---ITDLSLGSEDPLHQEA 226

Query: 200 T--------------KLEKKRADLVEEGPAVKDQLD-VLTKDSK 228
           T              KLE +  ++ +EG A +D+ + V+ K S+
Sbjct: 227 TSRDSNEATDHEPAEKLETQETEITQEGNAKEDEFENVIIKSSR 358


>BP085958 
          Length = 507

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 1   MPPPKSTATVQPSPQTKGGSSS 22
           +PPP ST+T    PQT   SSS
Sbjct: 209 IPPPCSTSTAHAPPQTNRTSSS 274


>BP030794 
          Length = 513

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 18/67 (26%), Positives = 35/67 (51%), Gaps = 2/67 (2%)
 Frame = +1

Query: 144 KDVGQAVSFKEAKVSAGKAQVAAMKEDFKKFTARKVLIADEI--SEVDIKLEELHREITK 201
           KD+ + ++F E      + ++  ++E  +    R   I D +  +E+ IKL  +   + +
Sbjct: 250 KDLKEFLAFVEEIQELSQLELMLLEEK-ESVEGRIKTIEDSLEKTELSIKLGNIEYALER 426

Query: 202 LEKKRAD 208
           LEK+RAD
Sbjct: 427 LEKERAD 447


>TC14757 similar to UP|O04361 (O04361) Prohibitin, complete
          Length = 1141

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 1   MPPPKSTATVQPSPQTKGGSSSHVSSEKLDTLFEEDPLAA 40
           +PPP ST    PS +    SSS  S+    T   ++P+++
Sbjct: 103 LPPPPSTPPSTPSMEASAPSSSTDSAASSTTPSAKEPISS 222


>TC14324 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan
          protein-like, partial (63%)
          Length = 1172

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 23/69 (33%), Positives = 29/69 (41%), Gaps = 7/69 (10%)
 Frame = +3

Query: 3  PPKSTATVQPSPQTKGGSSSHVSSEKLDT-------LFEEDPLAALDDFLDGTLEWDSPP 55
          PP ST  VQPS  +   + SH S  K  T       LF    LA +  F   T    S P
Sbjct: 6  PPSSTFIVQPSSLSFTPTDSHFSENKNQTGVIMKHQLFTLPLLALMFFFHSTTTLAASSP 185

Query: 56 RQADATAET 64
            A +++ T
Sbjct: 186APAPSSSPT 212


>TC19702 similar to UP|Q8LPT9 (Q8LPT9) R1, partial (11%)
          Length = 485

 Score = 25.8 bits (55), Expect = 8.1
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 21  SSHVSSEKLDTL---FEEDPLAALDDFLDGTLEWDSPPRQADATAETAQSSGV 70
           S+ V +EK++ L     E   +AL D  +  L+ ++PP+  +      +SSG+
Sbjct: 182 SNQVVAEKVNVLKRKLTEGDFSALKDIRETVLQLNAPPQLVEELKTKMKSSGM 340


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.311    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,145,111
Number of Sequences: 28460
Number of extensions: 32650
Number of successful extensions: 234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of query: 269
length of database: 4,897,600
effective HSP length: 89
effective length of query: 180
effective length of database: 2,364,660
effective search space: 425638800
effective search space used: 425638800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)