BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0143b.7
(485 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP052495 150 3e-37
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 49 2e-06
TC11317 similar to UP|Q40363 (Q40363) NuM1 protein, partial (12%) 36 0.012
TC19039 similar to UP|Q8L7W5 (Q8L7W5) AT4g12110/F16J13_180, part... 36 0.012
TC8946 homologue to GB|AAM66972.1|21617922|AY088650 pyridoxine b... 35 0.027
CB826981 35 0.036
TC19223 similar to UP|Q940C3 (Q940C3) AT3g27530/MMJ24_7, partial... 34 0.047
BP048314 34 0.061
TC13829 similar to UP|P93321 (P93321) Cdc2MsD protein, partial (... 34 0.061
TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partia... 33 0.080
BP032533 33 0.080
BF177869 33 0.080
TC9934 similar to UP|BAC98494 (BAC98494) AG-motif binding protei... 33 0.080
TC9268 similar to UP|Q9LHE6 (Q9LHE6) Genomic DNA, chromosome 3, ... 33 0.10
AV418706 33 0.10
TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precurso... 33 0.10
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 33 0.14
BP055778 33 0.14
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 32 0.18
TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich ... 32 0.18
>BP052495
Length = 524
Score = 150 bits (380), Expect = 3e-37
Identities = 82/106 (77%), Positives = 87/106 (81%), Gaps = 11/106 (10%)
Frame = -3
Query: 3 KSRKRGATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQG-----------G 51
+SRKRGATPTT ASQKRAKGAGE + G+PSPAKSASQR E+QQGG+QG G
Sbjct: 399 QSRKRGATPTTSASQKRAKGAGEPSAGNPSPAKSASQREEVQQGGEQGVDEQASNPLLQG 220
Query: 52 TTPIPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPK 97
TTPIPVEMA AKKTS KR SRKSGSSSSHHSKSSTSSSPLK SGPK
Sbjct: 219 TTPIPVEMAQAKKTSGKRYSRKSGSSSSHHSKSSTSSSPLKASGPK 82
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 48.9 bits (115), Expect = 2e-06
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Frame = -2
Query: 9 ATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMALAKKTSRK 68
++P + S +L + D +PA S S + + G+ + + A T R+
Sbjct: 429 SSPPSSESSSPEPSLSDLFLFDGTPAFSPSS-LSLSSPSSSSGSKSLDASSSSAAATVRR 253
Query: 69 RSSRKSGSSSSHHSKSSTSSSPLKESG---PKRVGMSKMAVPRATWFSSKPPPVVLSSSS 125
SSSS S SS+SSS SG P R + + ++ SS PP SSSS
Sbjct: 252 TRYSVPKSSSSSSSSSSSSSSSSSSSGSPPPPRPPSTPPSSSSSSSSSSSSPPPGASSSS 73
Query: 126 SSLESSNSSLDSNESDPV 143
SS SS+S S+ S P+
Sbjct: 72 SSSPSSSSPSSSSSSSPL 19
>TC11317 similar to UP|Q40363 (Q40363) NuM1 protein, partial (12%)
Length = 547
Score = 36.2 bits (82), Expect = 0.012
Identities = 45/163 (27%), Positives = 60/163 (36%), Gaps = 22/163 (13%)
Frame = +1
Query: 1 MPKSRKRGATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMA 60
MPKS K+ AT A+ A P AK A + E + E+A
Sbjct: 82 MPKSSKKSATKVEAAAPVAAA---------PKSAKKAKRAAEDEVEKQVSAKKQKIAEVA 234
Query: 61 LAKKTSRK-----RSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSS- 114
+K K + S SSS K + +PLK S +K A P + SS
Sbjct: 235 AKQKKETKLQKVKKESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSD 414
Query: 115 -------------KPPPVVL---SSSSSSLESSNSSLDSNESD 141
KP VV+ SSS +SS+ S+ESD
Sbjct: 415 EDSSDEEEEVIAKKPTKVVVPKKEESSSDEDSSSDEDSSSESD 543
>TC19039 similar to UP|Q8L7W5 (Q8L7W5) AT4g12110/F16J13_180, partial (61%)
Length = 763
Score = 36.2 bits (82), Expect = 0.012
Identities = 41/134 (30%), Positives = 55/134 (40%), Gaps = 2/134 (1%)
Frame = +2
Query: 6 KRGATPTTFASQKRAKGAGELTVGDPSPAKSASQRVEMQQGGDQGGTTPIPVEMALAKKT 65
+RG PTT ++ R L+ P K G TTP+ + T
Sbjct: 143 RRGCFPTTQFTKPR-----RLSAATSPPRKP------------YGSTTPLRSPI-----T 256
Query: 66 SRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMS--KMAVPRATWFSSKPPPVVLSS 123
S ++ S SSSS S S +SSS S P + S + A P T S+ P SS
Sbjct: 257 SSTATTFSSSSSSSPSSLSPSSSSRSNASPPSTITRSNPRFASPSVTCSSATRPSCACSS 436
Query: 124 SSSSLESSNSSLDS 137
SSS +S+ L S
Sbjct: 437 SSSVPSNSSPILPS 478
>TC8946 homologue to GB|AAM66972.1|21617922|AY088650 pyridoxine
biosynthesis protein-like {Arabidopsis thaliana;} ,
partial (45%)
Length = 503
Score = 35.0 bits (79), Expect = 0.027
Identities = 32/104 (30%), Positives = 47/104 (44%), Gaps = 8/104 (7%)
Frame = +2
Query: 60 ALAKKTSRKRS----SRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSK 115
A A ++ R R+ S+ + S + S TSS+P K + PK+ P +W SS
Sbjct: 113 ATAPQSPRPRNPPSPSKSASLRCSAAASSWTSSTPNKPASPKK------PAPAPSWPSSV 274
Query: 116 PPPVVLSSSSS----SLESSNSSLDSNESDPVWDKLTFYFNSKP 155
PP ++S +L SS S + S P W K +SKP
Sbjct: 275 SPPTSAPKAASLA*ATLSSSRKSNKPSPS-PSWPKPASAISSKP 403
>CB826981
Length = 591
Score = 34.7 bits (78), Expect = 0.036
Identities = 27/85 (31%), Positives = 36/85 (41%), Gaps = 3/85 (3%)
Frame = +3
Query: 158 WQHPGCEPYYTRECRDNLSNFPPQDAQNMPSPAREENDPHVEVSGGE---DQVSPIIQPD 214
WQ CE Y ++C +L N P +N RE+ P +V E DQ P+ QP
Sbjct: 96 WQGACCESYRRKKCLIDL-NLAPAVTEN-----REQEGPSSQVVTQEVQGDQQPPVAQPP 257
Query: 215 QVIGVMLPPKADVPASTFSEPSSRQ 239
Q LPP+ P +P Q
Sbjct: 258 Q---DALPPEVAQPPEVAQQPQVAQ 323
>TC19223 similar to UP|Q940C3 (Q940C3) AT3g27530/MMJ24_7, partial (13%)
Length = 525
Score = 34.3 bits (77), Expect = 0.047
Identities = 25/74 (33%), Positives = 33/74 (43%)
Frame = +2
Query: 64 KTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSS 123
KT K S SSS+ + S++S +P S +A+ +TW S P S
Sbjct: 233 KTEIKVHHSSSSSSSTSSAASTSSPTPSSSWSTSSPSSSNLALSLSTWLGSGPRHTSRSF 412
Query: 124 SSSSLESSNSSLDS 137
SS SL SSL S
Sbjct: 413 SSPSLSF*ASSLAS 454
>BP048314
Length = 394
Score = 33.9 bits (76), Expect = 0.061
Identities = 27/74 (36%), Positives = 38/74 (50%), Gaps = 4/74 (5%)
Frame = -3
Query: 61 LAKKTSRKRS----SRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKP 116
L K + RK+S S S SSSS S SS+SSS L + P+ + + + ++ S +
Sbjct: 281 LTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSCLSPAPPETSPLIFLPITNTSFKSIQT 102
Query: 117 PPVVLSSSSSSLES 130
PP SSS ES
Sbjct: 101 PP---SSSEEKQES 69
>TC13829 similar to UP|P93321 (P93321) Cdc2MsD protein, partial (43%)
Length = 515
Score = 33.9 bits (76), Expect = 0.061
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Frame = +2
Query: 33 PAKSASQRVEMQQGGDQGGTTPIPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLK 92
PAKS+ R + + + P AK S + S S SS+S SKSSTS+ P
Sbjct: 158 PAKSSLSRKPVSRWTKKASLRP-----PSAKSPSSRCSPNPSTSSAS--SKSSTSTKP-- 310
Query: 93 ESGPKRVGMSKMAVPRATWFSSKPPPVV----LSSSSSSLESSNSSLDSNESDP 142
P+ T + PPP L+ SS+S S+++ + N S P
Sbjct: 311 --------------PKTTTTTPPPPPTTLLRRLNPSSTSSSSTSTPISRNTSIP 430
>TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (47%)
Length = 1392
Score = 33.5 bits (75), Expect = 0.080
Identities = 34/98 (34%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Frame = +3
Query: 58 EMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPP 117
E L +T+ SSR GSS S K STSSS + S P +S + P
Sbjct: 183 ESDLRHQTTPTTSSRLGGSSLSWR-KPSTSSSSIAASSPTASPISTPPCSISVRRRKNPW 359
Query: 118 PVVLSSSSSS-----LESSNSSLDSNES----DPVWDK 146
P SSSS+S S SSL S +S P W +
Sbjct: 360 PSTPSSSSTSCSRAPARSRRSSLSSGKSSRRFSPSWSR 473
>BP032533
Length = 441
Score = 33.5 bits (75), Expect = 0.080
Identities = 20/44 (45%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Frame = +3
Query: 52 TTPIPVEMALAKKTSRKR-SSRKSGSSSSHHSKSSTSSSPLKES 94
TTP+ V +A+A+ R SS S +S+SH S S SSSP S
Sbjct: 99 TTPVAVAVAIAEPNPLLRTSSNSSATSASHSSSSPFSSSPSSPS 230
>BF177869
Length = 509
Score = 33.5 bits (75), Expect = 0.080
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Frame = +2
Query: 21 KGAGELTVGD---PSPAKSASQRVEMQQGGDQ----GGTTPI----PVEMALAKKTSRKR 69
K GEL D P+P + + +++ GD+ G P+ PVE+ K +
Sbjct: 56 KDNGELPACDKVEPAPVEVVKKPKKVEAAGDEDVDIGDEMPMSEFPPVEIEKDKDVAAGH 235
Query: 70 SSRKSGSSSSHHSKSSTSS 88
+S SGSSSS S SS+SS
Sbjct: 236 ASSSSGSSSSSSSGSSSSS 292
>TC9934 similar to UP|BAC98494 (BAC98494) AG-motif binding protein-4,
partial (37%)
Length = 1050
Score = 33.5 bits (75), Expect = 0.080
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -1
Query: 67 RKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSS----KPPPVVLS 122
R+ S R+S + HS+ +TSS+ S K S AV SS PP VL
Sbjct: 303 RESSGRESSTK*ETHSRPATSSAGTANSPAKMES*SPAAVELELLSSSIRSCDPPETVLP 124
Query: 123 SSSSSLESSNS 133
SSSS SS+S
Sbjct: 123 FSSSSSSSSSS 91
>TC9268 similar to UP|Q9LHE6 (Q9LHE6) Genomic DNA, chromosome 3, P1 clone:
MZE19, partial (30%)
Length = 805
Score = 33.1 bits (74), Expect = 0.10
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Frame = +3
Query: 30 DPSPAKSASQRVEMQQGGDQGGTTPIPVEMALAKKTSRKRSSRKSGSSSSHH----SKSS 85
DPS S+ Q P P + S SS + SS+S S S+
Sbjct: 222 DPSSVASSPPSTRTYLRWSQSCNPPAPASAGTSTAASSNTSSTSTASSTSGKPLAPSPSA 401
Query: 86 TSSSPLKESGPKRVGMSKMAVP--RATWFSSKPPPVVLSSSSSSLESSNSSLDSNESDPV 143
SS+PL + S + +P + S+ P + S+S S++S++ S+ + P+
Sbjct: 402 ASSTPLTPTPTSTSPSSTLQLPATSSAATSATKPSAWFTCSASCPASNSSTMTSSSTTPI 581
>AV418706
Length = 374
Score = 33.1 bits (74), Expect = 0.10
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Frame = +1
Query: 31 PSPAKSASQRVEMQQGGDQGGTTP--IPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSS 88
P P S +R Q T P +PV LA + ++ S SSS S SS+SS
Sbjct: 46 PPPPTSHYRR---QNPNSTAPTAPPTVPVLHPLAAAAATVAAAHSSAGSSSSSSSSSSSS 216
Query: 89 SPLKESGPKRVGMSKMAVP-RATWF--SSKPPPVVLSSSSSSLES 130
+P S ++ + P R + F S+ PPP S SS+ S
Sbjct: 217 APPAPSSTSSTTLNALPSPSRHSNFPPSNSPPPPPPSPPSSNSHS 351
>TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precursor (Atperox
P31) (ATP41) , partial (38%)
Length = 475
Score = 33.1 bits (74), Expect = 0.10
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 82 SKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLESSNSSL 135
S S+T+S+P + P P AT S+ P P S+SSS L+ ++SL
Sbjct: 220 SSSTTASTPTAATPPSSSPQLPSTKPNATPTSTSPSPATPSTSSSELKPPSNSL 381
Score = 29.3 bits (64), Expect = 1.5
Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 SSRKSGSSSSHHSKSS--TSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSS 127
SS+ S SS H++ S TS++ + PK A P T S PPP S+SSS
Sbjct: 64 SSQHSHSSPPSHTRDSHSTSTNTRAHNSPK-----SSATPSPTNKSPPPPPAPPRSASSS 228
Query: 128 LESS 131
+S
Sbjct: 229 TTAS 240
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 32.7 bits (73), Expect = 0.14
Identities = 36/118 (30%), Positives = 50/118 (41%), Gaps = 3/118 (2%)
Frame = +1
Query: 75 GSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSSSSSLESSNSS 134
G S+S S SS+SSS +S + P ++ SS PP SSSS SS+SS
Sbjct: 265 GCSASSSSSSSSSSS-----------LSSSSTPSSS--SSSPP------SSSSSSSSSSS 387
Query: 135 LDSNESDPVWDKLTFYFNSKPIAWQHPGCEPYYTRECRDNLSNFP---PQDAQNMPSP 189
S+ S P + F+S P P ++ L +P D + PSP
Sbjct: 388 SSSSWSSPSSSSSSSPFSSGPAPAPGPPSGAFFELLLLFELLPYPAPSSDDKSSSPSP 561
Score = 32.7 bits (73), Expect = 0.14
Identities = 30/89 (33%), Positives = 35/89 (38%), Gaps = 2/89 (2%)
Frame = +1
Query: 56 PVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRV--GMSKMAVPRATWFS 113
P + + +S SS S SSSS S SS+SSS SGP S F
Sbjct: 328 PSSSSSSPPSSSSSSSSSSSSSSSWSSPSSSSSSSPFSSGPAPAPGPPSGAFFELLLLFE 507
Query: 114 SKPPPVVLSSSSSSLESSNSSLDSNESDP 142
P P S SS S N S+ S P
Sbjct: 508 LLPYPAPSSDDKSSSPSPNGPSPSSSSSP 594
>BP055778
Length = 574
Score = 32.7 bits (73), Expect = 0.14
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = -2
Query: 76 SSSSHHSKSSTSSSPLKES--GPKRVGMSK-MAVPRATWFSSKPPPVVLS 122
S+ H S + T+SS +K S +R+G+++ P ATW SSK P++L+
Sbjct: 384 STRMHFSSNLTASSKVKFSCHSSRRIGLAR*FPSPVATWLSSKLMPIMLT 235
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 32.3 bits (72), Expect = 0.18
Identities = 32/92 (34%), Positives = 42/92 (44%)
Frame = -3
Query: 65 TSRKRSSRKSGSSSSHHSKSSTSSSPLKESGPKRVGMSKMAVPRATWFSSKPPPVVLSSS 124
+S SS SSS+ S SS+SSSP S S +PR V SSS
Sbjct: 523 SSSSSSSSFPCSSSTTTSSSSSSSSPFSSSSSSSCACSTRDLPRVGC-------GVCSSS 365
Query: 125 SSSLESSNSSLDSNESDPVWDKLTFYFNSKPI 156
SSS SS+S+ + S L+F+F P+
Sbjct: 364 SSSSSSSSSTPWFSFS----TSLSFFFLPPPL 281
>TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich RNA binding
protein 7 {Arabidopsis thaliana;} , partial (19%)
Length = 483
Score = 32.3 bits (72), Expect = 0.18
Identities = 25/95 (26%), Positives = 41/95 (42%), Gaps = 3/95 (3%)
Frame = +2
Query: 54 PIPVEMALAKKTSRKRSSRKSGSSSSHHSKSSTSSSP---LKESGPKRVGMSKMAVPRAT 110
P+P + + K S + ++++ +KS+TS P L +S + AVP
Sbjct: 164 PLPPPEMPSSPATLKSSPSSATATAAPSTKSTTSPPPPSTL*KSSTPAPTPPRAAVPSPK 343
Query: 111 WFSSKPPPVVLSSSSSSLESSNSSLDSNESDPVWD 145
SS PP +SS ++ S N S S W+
Sbjct: 344 STSSAAPPTAPTSSGTTAPSKNPPATSQSSWNTWN 448
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.309 0.125 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,128,027
Number of Sequences: 28460
Number of extensions: 115820
Number of successful extensions: 1585
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of query: 485
length of database: 4,897,600
effective HSP length: 94
effective length of query: 391
effective length of database: 2,222,360
effective search space: 868942760
effective search space used: 868942760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0143b.7