BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0143b.3
(369 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP049869 185 9e-48
TC14096 homologue to UP|CPTR_PEA (P21727) Triose phosphate/phosp... 62 2e-10
AW720113 55 2e-08
TC14931 similar to UP|Q9M9Z3 (Q9M9Z3) F4H5.5 protein, partial (55%) 54 5e-08
TC12333 similar to GB|AAP42755.1|30984584|BT008742 At2g30460 {Ar... 51 3e-07
TC18097 similar to UP|Q9LNH5 (Q9LNH5) F21D18.5, partial (10%) 51 3e-07
TC15915 similar to UP|Q9SFE9 (Q9SFE9) T26F17.9 (GONST5 golgi nuc... 50 6e-07
AV767296 49 1e-06
CN825108 47 4e-06
TC15637 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruv... 47 4e-06
TC19709 45 2e-05
TC10652 similar to UP|Q9SFE9 (Q9SFE9) T26F17.9 (GONST5 golgi nuc... 42 2e-04
TC19806 weakly similar to UP|US74_DROME (Q95YI5) UDP-sugar trans... 40 6e-04
BP059637 39 0.001
TC8887 38 0.003
TC19748 weakly similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoen... 37 0.005
AV780441 37 0.005
TC10382 weakly similar to UP|Q9SKP5 (Q9SKP5) At2g21180 protein (... 33 0.099
TC20193 similar to UP|Q7XI91 (Q7XI91) Transporter-related-like, ... 30 0.83
AV779144 28 2.4
>BP049869
Length = 532
Score = 185 bits (470), Expect = 9e-48
Identities = 88/175 (50%), Positives = 125/175 (71%)
Frame = -2
Query: 25 LSSGVILYNKWVLSTLYFNFPFPITLTMIHMAFSGAVAFVLIRVLKVVSPIKMTLHIYAT 84
LS VI+YNK++L +N+P+PI+LTMIHM F ++A++L+RV K+V P+ M+ +Y
Sbjct: 528 LSFTVIVYNKYILDRKMYNWPYPISLTMIHMGFCSSLAYLLVRVFKLVEPVSMSRELYLK 349
Query: 85 CVVPISAFFAASLWFGNTAYLFISVAFIQMLKALMPVATFLVAVTLGTEKLRCDVFWNMV 144
VVPI A ++ SLWF N+AY+++SV+FIQMLKALMPVA + + V E R + NMV
Sbjct: 348 SVVPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSIGVLFKKESFRNETMANMV 169
Query: 145 LVSVGVVISSYGEIHFNVIGTVYQVTGIIAEALRLVLTQVLLQKKGLTLNPITSL 199
+S+GV +++YGE F+V G Q+ + EA RLVL Q+LL KG++LNPITSL
Sbjct: 168 SISMGVAVAAYGEAKFDVFGVSLQLLAVAFEATRLVLIQILLYSKGISLNPITSL 4
>TC14096 homologue to UP|CPTR_PEA (P21727) Triose phosphate/phosphate
translocator, chloroplast precursor (CTPT) (P36) (E30),
partial (96%)
Length = 1564
Score = 61.6 bits (148), Expect = 2e-10
Identities = 68/285 (23%), Positives = 124/285 (42%), Gaps = 16/285 (5%)
Frame = +1
Query: 40 LYFNFPFPITLTMIHMAFSGAVAFVLIRV-LKVVSPIKMTLHIYATCVVPISAFFAASLW 98
+Y FP+P +++IH+ V V L +PI ++P++ A
Sbjct: 409 IYNYFPYPYFVSVIHLFVGVVYCLVSWTVGLPKRAPIDSN---QLKLLIPVAVCHALGHV 579
Query: 99 FGNTAYLFISVAFIQMLKALMPVATFLVAVTLGTEKLRCDVFWNMVLVSVGVVISSYGEI 158
N ++ ++V+F +KAL P + + + + ++ ++ V +GV ++S E+
Sbjct: 580 TSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTEL 759
Query: 159 HFNVIGTVYQVTGIIAEALRLVLTQVLLQKKGLTLNPITSLY-YIAPCSFVFLFIPWYIL 217
FN +G + + I+ R + + KK +T T+LY YI+ + + P IL
Sbjct: 760 SFNWLGFISAMISNISFTYRSIYS-----KKAMTDMDSTNLYAYISIIALIVCLPPAIIL 924
Query: 218 EKPEM-----EDPHMQFN--------FWI-FFSNALCALALNLSTFLVIGRTGAVTIRVA 263
E P + D + FW+ F + +A N + R +T V
Sbjct: 925 EGPVLLKHGFNDAIAKVGLVKFVTDLFWVGMFYHLYNQVATN-----TLERVAPLTHAVG 1089
Query: 264 GVLKDWLLITLSTVLFPESKITGLNITGYAIALSGVVLYNYLKVK 308
VLK +I S ++F T I G AIA++GV +Y+ +K +
Sbjct: 1090NVLKRVFVIGFSIIIFGNRISTQTGI-GTAIAIAGVAIYSLIKAR 1221
>AW720113
Length = 512
Score = 55.1 bits (131), Expect = 2e-08
Identities = 34/104 (32%), Positives = 53/104 (50%)
Frame = +2
Query: 10 KQHLLTYMYLLVYISLSSGVILYNKWVLSTLYFNFPFPITLTMIHMAFSGAVAFVLIRVL 69
K L T + + S + GV+L NK++LS + F +PI LTM HM ++V I L
Sbjct: 200 KTRLFTISLVSAWYSSNIGVLLLNKYLLSN--YGFKYPIFLTMCHMTACSLFSYVAIAWL 373
Query: 70 KVVSPIKMTLHIYATCVVPISAFFAASLWFGNTAYLFISVAFIQ 113
KVV + + + +S F S+ FGN + ++ V+F Q
Sbjct: 374 KVVPLQTIRSRVQFFKIATLSLVFCVSVVFGNISLRYLPVSFNQ 505
>TC14931 similar to UP|Q9M9Z3 (Q9M9Z3) F4H5.5 protein, partial (55%)
Length = 820
Score = 53.5 bits (127), Expect = 5e-08
Identities = 32/101 (31%), Positives = 57/101 (55%)
Frame = +1
Query: 237 NALCALALNLSTFLVIGRTGAVTIRVAGVLKDWLLITLSTVLFPESKITGLNITGYAIAL 296
+ L ++++N STFLVIG+T VT +V G LK L++ +L + NI G +A+
Sbjct: 124 SCLISISVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYILL-RDPFSWRNILGILVAM 300
Query: 297 SGVVLYNYLKVKDARTSQLQSTQDESTKMEKKAEDDVISNE 337
G++LY+Y +++ +++ S E ++ D +IS E
Sbjct: 301 IGMILYSYYCSLESQQKAVEAAAQASQAREAES-DPLISVE 420
>TC12333 similar to GB|AAP42755.1|30984584|BT008742 At2g30460 {Arabidopsis
thaliana;}, partial (20%)
Length = 474
Score = 50.8 bits (120), Expect = 3e-07
Identities = 30/74 (40%), Positives = 42/74 (56%)
Frame = +2
Query: 241 ALALNLSTFLVIGRTGAVTIRVAGVLKDWLLITLSTVLFPESKITGLNITGYAIALSGVV 300
A+++N STFLVIG+T VT V G L+ L++ L TG NI G IA+SG+
Sbjct: 5 AVSVNFSTFLVIGKTSPVTYPVLGHLQTCLVLGFGYTLL-HDPFTGRNILGILIAVSGMG 181
Query: 301 LYNYLKVKDARTSQ 314
LY+Y ++ Q
Sbjct: 182 LYSYFCTQENEKKQ 223
>TC18097 similar to UP|Q9LNH5 (Q9LNH5) F21D18.5, partial (10%)
Length = 528
Score = 50.8 bits (120), Expect = 3e-07
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Frame = +2
Query: 305 LKVKDARTSQL--QSTQDESTK---MEKKAED-----DVISNEETLQND-LVSDTHFDEE 353
+KVKD R SQL +S D TK EKK+ D V NE + D + SD +FDEE
Sbjct: 2 IKVKDVRASQLPAESIPDRLTKDWKFEKKSSDIFVPDSVSENEGSSGGDGIASDINFDEE 181
Query: 354 APLI-SSRISHLGR 366
APLI SSR+SH+GR
Sbjct: 182 APLISSSRLSHIGR 223
>TC15915 similar to UP|Q9SFE9 (Q9SFE9) T26F17.9 (GONST5 golgi nucleotide
sugar transporter), partial (38%)
Length = 545
Score = 50.1 bits (118), Expect = 6e-07
Identities = 31/82 (37%), Positives = 43/82 (51%)
Frame = +2
Query: 225 PHMQFNFWIFFSNALCALALNLSTFLVIGRTGAVTIRVAGVLKDWLLITLSTVLFPESKI 284
P+ I FS+ + A LN S F VI T AVT VAG LK + + +S ++F + I
Sbjct: 41 PYPWLALTIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIF-RNPI 217
Query: 285 TGLNITGYAIALSGVVLYNYLK 306
+ LN G I L G Y Y++
Sbjct: 218 SYLNAVGCGITLVGCTFYGYVR 283
>AV767296
Length = 490
Score = 49.3 bits (116), Expect = 1e-06
Identities = 32/96 (33%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
Frame = -3
Query: 224 DP-HMQFNFWIFFSNALCALALNLSTFLVIGRTGAVTIRVAGVLKDWLLITLSTVLFPES 282
DP + ++ F + + + ALN+ F+V+ T +VT+ VAG LK +I LS +F +
Sbjct: 485 DPARVPLDYGYIFISGVISFALNVMLFIVLKATSSVTVTVAGNLKTVAVIALSVAIF-RN 309
Query: 283 KITGLNITGYAIALSGVVLYNYLKVKDARTSQLQST 318
T N G IA+ G + Y L K A L+ T
Sbjct: 308 PFTVFNALGCLIAIGGCMWYGLLPKKWATMGTLEET 201
>CN825108
Length = 655
Score = 47.4 bits (111), Expect = 4e-06
Identities = 45/167 (26%), Positives = 79/167 (46%), Gaps = 1/167 (0%)
Frame = +2
Query: 26 SSGVILYNKWVLSTLYFNFPFPITLTMIHMAFSGAVAFVLIRVLKVVSPIKMTLHIYATC 85
S G+IL NK ++ T + F F TLT +H A +L LK + I+ T H+
Sbjct: 122 SVGIILVNKALMGT--YGFSFATTLTGLHF----ATTTLLTSFLKWMGYIQ-TSHLPLPD 280
Query: 86 VVPISAFFAASLWFGNTAYLFISVAFIQMLK-ALMPVATFLVAVTLGTEKLRCDVFWNMV 144
++ F S+ N + ++ SV F Q+ K +++PV+ FL + L + D ++
Sbjct: 281 LIKYVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFL-EIVLDNVRYSRDTKLSIS 457
Query: 145 LVSVGVVISSYGEIHFNVIGTVYQVTGIIAEALRLVLTQVLLQKKGL 191
LV +GV + + ++ N G + + + AL+ L +K L
Sbjct: 458 LVLLGVAVCTVTDVSVNAKGFMAAAVAVWSTALQQYYVHFLQRKYSL 598
>TC15637 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruvate
translocator protein-like, partial (32%)
Length = 680
Score = 47.4 bits (111), Expect = 4e-06
Identities = 24/75 (32%), Positives = 44/75 (58%)
Frame = +2
Query: 232 WIFFSNALCALALNLSTFLVIGRTGAVTIRVAGVLKDWLLITLSTVLFPESKITGLNITG 291
W N+ A +NL+ FLV T A+T++V G K + + +S ++F ++ ++ + G
Sbjct: 62 WYLLFNSTLAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIF-KNPVSVTGMMG 238
Query: 292 YAIALSGVVLYNYLK 306
YA+ + GV+LY+ K
Sbjct: 239 YALTVFGVILYSEAK 283
>TC19709
Length = 483
Score = 45.1 bits (105), Expect = 2e-05
Identities = 26/71 (36%), Positives = 40/71 (55%), Gaps = 2/71 (2%)
Frame = +2
Query: 234 FFSNALCALAL--NLSTFLVIGRTGAVTIRVAGVLKDWLLITLSTVLFPESKITGLNITG 291
FF C +A+ NLS F+ IGR AV+ +V G +K L++ L + F + + I G
Sbjct: 2 FFITLSCTIAVGTNLSQFICIGRFSAVSFQVIGHMKTILVLILGFIFFGKEGLNVQVIIG 181
Query: 292 YAIALSGVVLY 302
AIA+ G++ Y
Sbjct: 182 MAIAILGMIWY 214
>TC10652 similar to UP|Q9SFE9 (Q9SFE9) T26F17.9 (GONST5 golgi nucleotide
sugar transporter), partial (28%)
Length = 595
Score = 41.6 bits (96), Expect = 2e-04
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = +3
Query: 241 ALALNLSTFLVIGRTGAVTIRVAGVLKDWLLITLSTVLFPESKITGLNITGYAIALSGVV 300
A LN S F VI AVT VAG LK + + +S ++F + I+ +N G AI L G
Sbjct: 12 AFCLNFSIFYVIHSPPAVTFNVAGNLKVAVAVLVSWLIF-RNPISYMNSIGCAITLIGCT 188
Query: 301 LYNYLK 306
Y Y++
Sbjct: 189 FYGYVR 206
>TC19806 weakly similar to UP|US74_DROME (Q95YI5) UDP-sugar transporter
UST74c (Fringe connection protein), partial (10%)
Length = 523
Score = 40.0 bits (92), Expect = 6e-04
Identities = 24/79 (30%), Positives = 38/79 (47%)
Frame = +3
Query: 242 LALNLSTFLVIGRTGAVTIRVAGVLKDWLLITLSTVLFPESKITGLNITGYAIALSGVVL 301
+ LN + FL A+T + GVLK TL VL ++ LN++G I +G V
Sbjct: 9 IVLNYTMFLCTVVNSALTTTIVGVLKGVGSTTLGFVLLDGVQVHALNVSGLVINTAGGVW 188
Query: 302 YNYLKVKDARTSQLQSTQD 320
Y+Y K + + ++ D
Sbjct: 189 YSYAKYQQKMSKTVKLVTD 245
>BP059637
Length = 471
Score = 38.9 bits (89), Expect = 0.001
Identities = 39/137 (28%), Positives = 69/137 (49%), Gaps = 4/137 (2%)
Frame = -2
Query: 20 LVYISLSSGVILYNKWVLSTLYFNFPFPITLTMIHMAFSGAVAFVLIRVLKVVSPIKMTL 79
L + S G+IL NK +++ + F F TLT +H A + + VL + L ++P
Sbjct: 398 LFNVVTSVGIILVNKALMAK--YGFSFATTLTGMHFATTTLLTLVL-KSLGYITP----S 240
Query: 80 HIYATCVVPISAFFAASLWFGNTAYLFISVAFIQMLK-ALMPVATFLVAVTLGTEKLRCD 138
H+ + ++ F S+ N + ++ SV F Q+ K +++PV+ FL V CD
Sbjct: 239 HLPISDIIKFVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVL-----DMCD 75
Query: 139 V---FWNMVLVSVGVVI 152
+ +++LV +GV I
Sbjct: 74 IQGHKLSILLVLLGVAI 24
>TC8887
Length = 674
Score = 37.7 bits (86), Expect = 0.003
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 240 CALA--LNLSTFLVIGRTGAVTIRVAGVLKDWLLITLSTVLFPESKITGLNITGYAIALS 297
C LA LN S FL AVT + G LKD I L ++F N+ G + +
Sbjct: 49 CTLAFFLNYSIFLYTTLNSAVTQTICGNLKDLFTIGLGWIIFGGLPFDFWNVIGQLLGFA 228
Query: 298 GVVLYNYLKV 307
G LY Y K+
Sbjct: 229 GSGLYAYYKL 258
>TC19748 weakly similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruvate
translocator protein-like, partial (22%)
Length = 427
Score = 37.0 bits (84), Expect = 0.005
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Frame = +3
Query: 28 GVILYNKWVLSTLYFNFPFPITLTMIHM----AFS-GAVAFVLIRVLKVVSPIKMTLHIY 82
GV+L NK++LS ++ + +PI LTM+HM A+S GA+ F+ + L+ + K L I+
Sbjct: 249 GVLLLNKYLLS--FYGYRYPIFLTMLHMISCSAYSYGAINFLDLVPLQHIHSKKQFLKIF 422
Query: 83 A 83
A
Sbjct: 423 A 425
>AV780441
Length = 141
Score = 37.0 bits (84), Expect = 0.005
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +2
Query: 227 MQFNFWIFFSNALCALALNLSTFLVIGRT 255
+ F F +F +N++CA ALNL+ FL++G+T
Sbjct: 50 LPFGFAVFGTNSVCAFALNLAVFLLVGKT 136
>TC10382 weakly similar to UP|Q9SKP5 (Q9SKP5) At2g21180 protein
(At2g21180/F26H11.6), partial (66%)
Length = 824
Score = 32.7 bits (73), Expect = 0.099
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 189 KGLTLNPIT-SLYYIAPCSFVFLFIPWYILEKPEMEDPHMQFNFWIFFSNALCALAL 244
+G TLNP+ + I F+FL I WY+ + +E QF W+ F+ + + L
Sbjct: 178 EGFTLNPLPYPVLLILALIFIFLGISWYLSYEEVVETAQEQFG-WVLFATPVVLILL 345
>TC20193 similar to UP|Q7XI91 (Q7XI91) Transporter-related-like, partial
(26%)
Length = 544
Score = 29.6 bits (65), Expect = 0.83
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 26 SSGVILYNKWVLSTLYFNFPFPITLTMIHMAFSGAVAFV 64
S G+I+ NK ++S + F F TLT H A + V V
Sbjct: 319 SVGIIMANKQLMSNNGYAFSFATTLTGFHFAVTALVGLV 435
>AV779144
Length = 544
Score = 28.1 bits (61), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 76 KMTLHIYATCVVPISAFFAASLWF 99
+M L + C+V ISAFF LWF
Sbjct: 160 QMLL*VCKNCIVTISAFFLLFLWF 89
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,263,566
Number of Sequences: 28460
Number of extensions: 87274
Number of successful extensions: 818
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of query: 369
length of database: 4,897,600
effective HSP length: 92
effective length of query: 277
effective length of database: 2,279,280
effective search space: 631360560
effective search space used: 631360560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0143b.3