TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0142.9
         (341 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14798 similar to UP|Q84TF6 (Q84TF6) At1g09740, partial (85%)         30  0.58
TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F...    29  1.3
TC19684 similar to UP|AAR88435 (AAR88435) NAC domain protein, pa...    26  8.4
BP037838                                                               26  8.4

>TC14798 similar to UP|Q84TF6 (Q84TF6) At1g09740, partial (85%)
          Length = 1309

 Score = 30.0 bits (66), Expect = 0.58
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 198 ILLIQLSSKRLDFLKVNPISYLQKFRRD--VERTSNVHLEFFKL 239
           +LL+      L F+   P+ Y  K+R    V+  + VHL+FF+L
Sbjct: 924 LLLVPCHDSALKFMSPMPVRYCYKYRFSLFVDNNAAVHLKFFQL 1055


>TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (36%)
          Length = 880

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 24/105 (22%), Positives = 43/105 (40%)
 Frame = +3

Query: 22  NEPTYDDAMFRRRYRMQKHLFLRIVDDLSSSDNYFTQRVDAANK*GISPLAKCTTAIRML 81
           + P + +  FRR +RM K  F  I  +L S+      + +   +  I    +    I  L
Sbjct: 357 SHPDFPEEEFRRSFRMSKATFEMICRELDSA----VTKKNTMLREAIPVRQRVAVCIWRL 524

Query: 82  AYGVAAHAVDEYIKIGGTTSLECLRRFCKGIIRLYEQQYLRAPTQ 126
           A G     V +   +G +T  + +   C  I  +   ++LR P +
Sbjct: 525 ATGDPLRLVAKRFGLGISTCHKLVLEVCSAIKTVLMPKFLRWPDE 659


>TC19684 similar to UP|AAR88435 (AAR88435) NAC domain protein, partial (48%)
          Length = 535

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
 Frame = -3

Query: 287 NLGKVDLVHS--NHTRPRCYPLLQIMCVLDP 315
           N+GK  L+H        RC+P +Q  C+L+P
Sbjct: 494 NIGKTILMHDPIRFDSFRCFPHIQHQCLLNP 402


>BP037838 
          Length = 377

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 133 LHASDMRGFPGMIESIDYMHWEWKN 157
           LH+  M   PGM  S   +HWEW +
Sbjct: 331 LHSQRMMVIPGMRLSHWRIHWEWNS 257


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.340    0.148    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,948,372
Number of Sequences: 28460
Number of extensions: 83495
Number of successful extensions: 583
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of query: 341
length of database: 4,897,600
effective HSP length: 91
effective length of query: 250
effective length of database: 2,307,740
effective search space: 576935000
effective search space used: 576935000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 55 (25.8 bits)