BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0140.2
(123 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14365 similar to UP|Q9XFC1 (Q9XFC1) Stearoyl acyl carrier prot... 30 0.12
BP054107 27 0.77
TC8082 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein-... 27 0.77
BP083308 27 1.00
TC10332 similar to UP|Q8H6R4 (Q8H6R4) Jp18, partial (67%) 27 1.00
AV418586 27 1.3
AV768020 26 2.2
AV765408 26 2.2
AU251494 26 2.2
AV781082 25 2.9
TC14642 homologue to UP|O65761 (O65761) Beta-galactosidase (Lac... 25 2.9
TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing fact... 25 2.9
TC11995 25 2.9
AV425816 25 2.9
TC15740 weakly similar to GB|AAM19935.1|20453393|AY097419 AT5g58... 25 2.9
BP079571 25 2.9
BP061139 25 3.8
TC17147 similar to UP|Q8LP14 (Q8LP14) Nine-cis-epoxycarotenoid d... 25 3.8
AU089377 25 3.8
BP046708 24 8.5
>TC14365 similar to UP|Q9XFC1 (Q9XFC1) Stearoyl acyl carrier protein
desaturase Lldd3A20, partial (94%)
Length = 1539
Score = 30.0 bits (66), Expect = 0.12
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 21 STNARTLSPHILHLYQPMLVCHLDNLMPRTPCVIMIASTPPSQHH 65
S NA+T S +YQ L CH+ C+IM SQ+H
Sbjct: 1302 SHNAKTCSSITFSIYQTCLSCHM-----HVTCIIMTVDHQSSQNH 1183
Score = 24.3 bits (51), Expect = 6.5
Identities = 13/51 (25%), Positives = 18/51 (34%)
Frame = +3
Query: 46 LMPRTPCVIMIASTPPSQHHHSCKPTVNRAPGWFPEKRGVFPEPPKTALHN 96
L+P+TPC A+ H H + T P PP H+
Sbjct: 12 LIPKTPCTFKPATPSRPFHWHGHQETTTTTEHTVTTPHHPSPPPPPYRRHS 164
>BP054107
Length = 327
Score = 27.3 bits (59), Expect = 0.77
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 2/58 (3%)
Frame = -3
Query: 50 TPCVIMIASTPPSQHHHSCKP--TVNRAPGWFPEKRGVFPEPPKTALHNVTLLQHLRN 105
+P I++ P H+SC+P TV W+ + P P T + VT LQ L N
Sbjct: 301 SPSTILMVIRGPVGAHYSCRPDTTVRWGDPWYRRR----PIAPFTFVVVVTRLQMLAN 140
>TC8082 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein-3, partial
(54%)
Length = 1913
Score = 27.3 bits (59), Expect = 0.77
Identities = 12/22 (54%), Positives = 13/22 (58%), Gaps = 1/22 (4%)
Frame = -2
Query: 76 PGWFPEK-RGVFPEPPKTALHN 96
P W P K R +FP P ALHN
Sbjct: 1261 PSWIPTKLRSIFPLHPLQALHN 1196
>BP083308
Length = 314
Score = 26.9 bits (58), Expect = 1.00
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 50 TPCVIMIASTPPSQHHHSCKPTVNRAPGW 78
TP STPPS +C P V P W
Sbjct: 169 TPTACTATSTPPSPLPATCAPWVRATPLW 83
>TC10332 similar to UP|Q8H6R4 (Q8H6R4) Jp18, partial (67%)
Length = 786
Score = 26.9 bits (58), Expect = 1.00
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 27 LSPHILHLYQPMLVCHLDNLMPRTPCVIMIASTPPSQHHHSCK-PTVNRAP 76
LSPH L+ P+ H + +P P +T P HHH C+ TVN+ P
Sbjct: 471 LSPH--QLFVPL---HHHSTLPACPKT----TTRPFWHHHKCRFFTVNQRP 346
>AV418586
Length = 416
Score = 26.6 bits (57), Expect = 1.3
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Frame = +1
Query: 26 TLSPHILHLYQPMLVCHLDNL---------MPRTPCVIMIASTPPSQHHHSCKPTVNR 74
TLSP L + P+ L NL +PR+ C + P HH P++ R
Sbjct: 61 TLSPRSLTPHLPLFSLSLSNLFFTFFFTISLPRSQCRNLFRHFPRPLPHHPHSPSLRR 234
>AV768020
Length = 268
Score = 25.8 bits (55), Expect = 2.2
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Frame = -2
Query: 61 PSQHHHSCKPTVNRAPGWFPEKRGVFPEPPKTALHNVTL-------LQHLRNTTQSDIHR 113
P HH PT +R R PP A H+ L LQ +T Q++ R
Sbjct: 231 PHHHHPLISPTTHRCSSQSTTTRWYCTVPPPPATHSPPLHLPSPPTLQIPSSTMQTEPTR 52
Query: 114 TGSSDTTVRK 123
+ T R+
Sbjct: 51 KADKEETQRE 22
>AV765408
Length = 507
Score = 25.8 bits (55), Expect = 2.2
Identities = 20/67 (29%), Positives = 28/67 (40%), Gaps = 11/67 (16%)
Frame = +3
Query: 7 SSSAIDITTYLASMSTNARTLSPHILHLY-----------QPMLVCHLDNLMPRTPCVIM 55
+S+ I ITT STN T + LHL+ PM + +PC +
Sbjct: 90 TSNLITITTRRVLFSTNTNTNTNPKLHLFPNHHKTFFLDGPPMATLYPTAASSASPCPV- 266
Query: 56 IASTPPS 62
+ TPPS
Sbjct: 267 LPGTPPS 287
>AU251494
Length = 380
Score = 25.8 bits (55), Expect = 2.2
Identities = 16/62 (25%), Positives = 28/62 (44%), Gaps = 16/62 (25%)
Frame = +2
Query: 23 NARTLSPHILHLYQPMLVC-----------HLDNLMPRTPCVIMIAS-----TPPSQHHH 66
+ L PH++HL+ P+++ HL L+P P + + S + P +H
Sbjct: 2 SGENLLPHLIHLFPPLVLLLECLNHVTV*KHL-RLLPHLPSSMRVLSMSLMISLPRRHKQ 178
Query: 67 SC 68
SC
Sbjct: 179SC 184
>AV781082
Length = 488
Score = 25.4 bits (54), Expect = 2.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 45 NLMPRTPCVIMIASTPPSQHHHSCKP 70
++ PR+PCV ++ ST H SC P
Sbjct: 270 SMYPRSPCVSILVST--VLHDFSCSP 199
>TC14642 homologue to UP|O65761 (O65761) Beta-galactosidase (Lactase)
(Fragment) , partial (78%)
Length = 2239
Score = 25.4 bits (54), Expect = 2.9
Identities = 11/34 (32%), Positives = 16/34 (46%)
Frame = -3
Query: 41 CHLDNLMPRTPCVIMIASTPPSQHHHSCKPTVNR 74
CH+ +L+P +I P+ H C PT R
Sbjct: 887 CHVKSLLPSLRPFNVIGPRTPAFHVSKCGPTFGR 786
>TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing factor 18
(PRP18 homolog) (hPRP18), partial (8%)
Length = 563
Score = 25.4 bits (54), Expect = 2.9
Identities = 13/46 (28%), Positives = 18/46 (38%)
Frame = +1
Query: 45 NLMPRTPCVIMIASTPPSQHHHSCKPTVNRAPGWFPEKRGVFPEPP 90
N +P+ P +S P S + S R+ W P P PP
Sbjct: 103 NPLPKKPAARNSSSAPRSNRNKSRNSANKRSANWKPNL*NAPPPPP 240
>TC11995
Length = 726
Score = 25.4 bits (54), Expect = 2.9
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = -3
Query: 51 PCVIMIASTPPSQHHHSCKPTVNRAPGWFPEKRGVFP 87
P + + S+P + HH CKP NR P + VFP
Sbjct: 475 PLIRLEVSSPS*RCHHFCKPK-NRKPSIQRLDKRVFP 368
>AV425816
Length = 415
Score = 25.4 bits (54), Expect = 2.9
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -1
Query: 87 PEPPKTALHNVTLLQHLRNTTQSDIHRTGSS 117
P P++ALH T+ H + TQS R S
Sbjct: 370 PHTPRSALHR*TM*THFPSLTQSPFSREKDS 278
>TC15740 weakly similar to GB|AAM19935.1|20453393|AY097419 AT5g58640/mzn1_90
{Arabidopsis thaliana;}, partial (65%)
Length = 575
Score = 25.4 bits (54), Expect = 2.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 59 TPPSQHHHSCKPTVNRAPGWFPEKR 83
T PS HH +P VN A FP ++
Sbjct: 172 TKPSHSHHHEQPAVNPATIQFPSEK 246
>BP079571
Length = 414
Score = 25.4 bits (54), Expect = 2.9
Identities = 14/52 (26%), Positives = 25/52 (47%)
Frame = +2
Query: 15 TYLASMSTNARTLSPHILHLYQPMLVCHLDNLMPRTPCVIMIASTPPSQHHH 66
T+L+S +N + + H+ + P H +PR P + + + S HHH
Sbjct: 146 TFLSSAKSNPPSSNLHVH--FHPEASRHSLAKVPRLPTMEAVCFSQHSHHHH 295
>BP061139
Length = 352
Score = 25.0 bits (53), Expect = 3.8
Identities = 14/42 (33%), Positives = 19/42 (44%)
Frame = -2
Query: 41 CHLDNLMPRTPCVIMIASTPPSQHHHSCKPTVNRAPGWFPEK 82
CHL L+P+ P ++ P H H T G+FP K
Sbjct: 198 CHLWLLIPQAPFCFLVFCXPIFVHFH----TACLHNGFFPXK 85
>TC17147 similar to UP|Q8LP14 (Q8LP14) Nine-cis-epoxycarotenoid
dioxygenase4, partial (22%)
Length = 663
Score = 25.0 bits (53), Expect = 3.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 58 STPPSQHHHSCKPTVNRAPGWFPEKRGVFPEPPKT 92
STPPS HH P+ + P + P PP T
Sbjct: 255 STPPSPHHARNSPSTHHPP--------LPPPPPPT 175
>AU089377
Length = 729
Score = 25.0 bits (53), Expect = 3.8
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 55 MIASTPPSQHHHSCKPTVNRAPGWFPEK 82
+ A PP Q HHS K T P K
Sbjct: 340 LFAEPPPEQRHHSFKGTXXHTGAIVPTK 257
>BP046708
Length = 498
Score = 23.9 bits (50), Expect = 8.5
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Frame = +3
Query: 37 PMLVCHLDNLMPRTPCVIMIASTPPSQHHHSCK--PTVNRAPGWFPEKRGVFPEPPKTAL 94
PML +L+PR P +++ P + H K P + V P+ P T
Sbjct: 207 PMLDTTSISLVPRRPLHLLVPQFPDQRRIHLFKVHPXAEKM---------VQPQVPSTPQ 359
Query: 95 HNVTL----LQHLRNTTQSDIHRTGSSD 118
H V + L H R +HR + D
Sbjct: 360 HPVQIKQQELHHRRR--NPPVHRAPAPD 437
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.131 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,819,419
Number of Sequences: 28460
Number of extensions: 51021
Number of successful extensions: 417
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of query: 123
length of database: 4,897,600
effective HSP length: 79
effective length of query: 44
effective length of database: 2,649,260
effective search space: 116567440
effective search space used: 116567440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)
Lotus: description of TM0140.2