TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0140.12
         (414 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16716 similar to GB|AAP37657.1|30725270|BT008298 At5g05630 {Ar...    27  6.2
TC15604 similar to UP|PROC_PEA (Q04708) Pyrroline-5-carboxylate ...    27  6.2
AW720245                                                               27  8.1
TC9230 homologue to UP|Q8MFR8 (Q8MFR8) Plastidic ATP/ADP transpo...    27  8.1

>TC16716 similar to GB|AAP37657.1|30725270|BT008298 At5g05630 {Arabidopsis
           thaliana;}, partial (28%)
          Length = 580

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 56  IGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAG 99
           +  ALGP  G   G   +L   +  ALY +  ++    AVPA G
Sbjct: 378 VSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAVPAVG 509


>TC15604 similar to UP|PROC_PEA (Q04708) Pyrroline-5-carboxylate reductase
           (P5CR) (P5C reductase) , complete
          Length = 1124

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +2

Query: 47  MKGGGP--YYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGIFRET 104
           + G GP   YL   AL  + GV+ GL   L  ++A    VLGA           G  ++ 
Sbjct: 521 LSGSGPAYVYLAVEALA-DGGVAAGLPRDLALSLASQT-VLGAASMVTPTGKHPGQLKDD 694

Query: 105 ITQVNGTTIAQPIESPSSHDLQIYGIVVTIV 135
           +T   GTTIA        H+L+  G   T++
Sbjct: 695 VTSPGGTTIA------GVHELEKGGFRATLM 769


>AW720245 
          Length = 521

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 16/44 (36%), Positives = 22/44 (49%)
 Frame = +3

Query: 347 LFTAFLCSGCVVIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLL 390
           LFT  L     + G+LD + P V    +L Y  V+  C LL +L
Sbjct: 174 LFTPPLIFCMYITGHLDSVFPEVYRKEILRYTYVHQCCLLLSML 305


>TC9230 homologue to UP|Q8MFR8 (Q8MFR8) Plastidic ATP/ADP transporter
           (Fragment), partial (42%)
          Length = 1136

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 20/43 (45%)
 Frame = +2

Query: 248 PLGTLAATLVTTFMYLVSVIMFGALATREKLLTDRLLTATVAW 290
           PLG     L+  FM    ++ FG+LA     L   LL   +AW
Sbjct: 500 PLGKSGGALIQQFM----ILSFGSLANSTPYLGGVLLVIVLAW 616


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.142    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,211,065
Number of Sequences: 28460
Number of extensions: 120906
Number of successful extensions: 952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of query: 414
length of database: 4,897,600
effective HSP length: 93
effective length of query: 321
effective length of database: 2,250,820
effective search space: 722513220
effective search space used: 722513220
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)