TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0137.11
         (178 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%)         33  0.037
AV425658                                                               27  1.5
TC10672 weakly similar to PIR|T00710|T00710 thioredoxin homolog ...    27  2.0
NP459535 cytochrome f [Lotus japonicus]                                26  3.4
AV774526                                                               26  4.5
TC10679 weakly similar to UP|LOXA_PHAVU (P27480) Lipoxygenase 1 ...    26  4.5
TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial...    25  5.9

>TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%)
          Length = 826

 Score = 32.7 bits (73), Expect = 0.037
 Identities = 27/129 (20%), Positives = 53/129 (40%), Gaps = 10/129 (7%)
 Frame = +2

Query: 32  PSDAQLVAKTCKNTPYPSACLQFLQADPRSSSADVTGLALIMVDVIQAKTNGVLNKISQL 91
           P+  + +  +C+ T YP+ C+Q L         +   LA+  + V  + T    + + ++
Sbjct: 146 PNPIEFIKFSCRATRYPAVCVQTLTRYAHVIRQNEQQLAITALTVSMSMTKSSASFMKKM 325

Query: 92  LKGGGDKPALNSCQGRYNAILKADIPQATQALK------TGNPKF----AEDGVADAGVE 141
            K  G KP  +         +   + +  Q++K       GN  +     +  V+ A  +
Sbjct: 326 TKVKGIKPREHGAVQDCKENMDNSVDRLNQSVKEMGLTAAGNVMWRMSNVQTWVSAALTD 505

Query: 142 ANTCESGFS 150
            NTC  GF+
Sbjct: 506 QNTCLDGFA 532


>AV425658 
          Length = 280

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 3  NLKSLSLICNI---FIVVATISMSIGHCRVLQPSDAQLVAKTCKNTPYPSACLQFL 55
          N+ S S +CNI   F+++     SI       P+        CK+TP PS C   L
Sbjct: 34 NMASKSTLCNIPLTFLILLPFFASIAFSDT-PPTTPVSPGTACKSTPDPSYCKSVL 198


>TC10672 weakly similar to PIR|T00710|T00710 thioredoxin homolog F22O13.5 -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (12%)
          Length = 511

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 9   LICNIFIVVATISMSIGHCRVLQPSDAQLVAKTCKNTPYPSACL--QFLQADPRSS 62
           L+  +F   + +S  +GH +    +   +V+K  K+  +PS  L  Q L++ P SS
Sbjct: 156 LMAEVFTNTSLVSSWLGHTQQHHHNQKLMVSKVAKSCSFPSLKLKSQALRSSPFSS 323


>NP459535 cytochrome f [Lotus japonicus]
          Length = 963

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 75  DVIQAKTNGVLNKISQLLKGGGDKPALNSCQGR 107
           +V  A T+G++NKI +  KGG +   +++  GR
Sbjct: 610 NVYNATTSGIINKIIRKDKGGYEITIVDASDGR 708


>AV774526 
          Length = 472

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 8/27 (29%), Positives = 19/27 (69%)
 Frame = -1

Query: 7  LSLICNIFIVVATISMSIGHCRVLQPS 33
          ++ IC ++ ++ T+S+ +  CR++ PS
Sbjct: 88 VTCICRLWTILWTLSIDLSGCRLVAPS 8


>TC10679 weakly similar to UP|LOXA_PHAVU (P27480) Lipoxygenase 1  , partial
           (22%)
          Length = 615

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 2/60 (3%)
 Frame = +3

Query: 75  DVIQAKTNGVLNKISQLLKGGGD--KPALNSCQGRYNAILKADIPQATQALKTGNPKFAE 132
           D+I A   GVL     LL+  GD    A+++    ++  +   +  AT+    GN K  E
Sbjct: 120 DIISATKGGVLGLAGDLLEFAGDVAGQAVDTATAIFSRSVAIQLISATKTDANGNGKLGE 299


>TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial (40%)
          Length = 579

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 32  PSDAQLVAKTCKNTPYPSACLQFLQADPRSSSADVTGLALIMVDVI 77
           P   Q +        YPS C  FL  +   +S   TGL LI+V+ +
Sbjct: 190 PGRHQWLQSVAMTPLYPSGCASFLYCESVVTSKKYTGL-LILVNTL 56


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,782,825
Number of Sequences: 28460
Number of extensions: 31984
Number of successful extensions: 154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of query: 178
length of database: 4,897,600
effective HSP length: 84
effective length of query: 94
effective length of database: 2,506,960
effective search space: 235654240
effective search space used: 235654240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)