BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0135.9
(645 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J... 259 1e-69
BF177891 249 1e-66
TC16499 similar to UP|Q7X9J7 (Q7X9J7) P60 katanin (Fragment), pa... 191 4e-49
TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATP... 177 6e-45
AV408284 176 1e-44
TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (T... 175 2e-44
TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%) 155 1e-38
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {... 144 4e-35
TC18639 similar to UP|Q9LPN2 (Q9LPN2) F2J10.1 protein, partial (4%) 123 8e-29
TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase... 119 2e-27
TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), pa... 114 5e-26
CB826675 98 5e-21
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat... 97 1e-20
TC9326 homologue to UP|Q93WX4 (Q93WX4) Suppressor of K+ transpor... 94 5e-20
BP056372 90 1e-18
TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 ... 89 3e-18
CN825587 89 3e-18
AV421390 82 2e-16
TC16655 homologue to UP|O99018 (O99018) Chloroplast protease pre... 76 1e-14
CN825067 76 1e-14
>TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J8.110 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 771
Score = 259 bits (661), Expect = 1e-69
Identities = 129/222 (58%), Positives = 169/222 (76%), Gaps = 3/222 (1%)
Frame = +3
Query: 320 PSQSLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFTH 379
P+ + + +EFE V+P EIGV F DIGA++++K++L ELV+LP+RRP+LF
Sbjct: 108 PTPAKAEVPDNEFEKRIRPEVIPANEIGVTFGDIGAMDEIKESLQELVMLPLRRPDLFK- 284
Query: 380 GNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLTSKWFGDAEKLTKALFS 439
G LL+P +GILLFGPPGTGKT++A A+A EAGA+FI+VS ST+TSKWFG+ EK +ALFS
Sbjct: 285 GGLLKPCRGILLFGPPGTGKTMLAXAIANEAGASFINVSMSTITSKWFGEDEKNVRALFS 464
Query: 440 FASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATN 499
A+K+AP IIFVDEVDS+LG R EHEA R+++NEFM WDGL + ++IL+L ATN
Sbjct: 465 LAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTAPGEQILVLAATN 644
Query: 500 RPFDLDDAVIRRLPRRIYVDLPDADNRKKILRIIL---KHEN 538
RPFDLD+A+IRR RRI V LP +NR+ IL+ +L KHEN
Sbjct: 645 RPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLA*EKHEN 770
>BF177891
Length = 390
Score = 249 bits (636), Expect = 1e-66
Identities = 125/126 (99%), Positives = 126/126 (99%)
Frame = +1
Query: 364 NELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLT 423
+ELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLT
Sbjct: 13 SELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLT 192
Query: 424 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDG 483
SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDG
Sbjct: 193 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDG 372
Query: 484 LRSKEN 489
LRSKEN
Sbjct: 373 LRSKEN 390
>TC16499 similar to UP|Q7X9J7 (Q7X9J7) P60 katanin (Fragment), partial (61%)
Length = 646
Score = 191 bits (484), Expect = 4e-49
Identities = 92/95 (96%), Positives = 94/95 (98%)
Frame = +1
Query: 550 NLTDGYSGSDLKNLCITAAYRPVQELLEEEKAGDNNITNVALRPLNLDDFVQSKSKVGPS 609
NLTDGYSGSDLKNLCITAAYRPVQELLEEEKAGDNNITNVALRPLNLDDFVQSKS+VGPS
Sbjct: 1 NLTDGYSGSDLKNLCITAAYRPVQELLEEEKAGDNNITNVALRPLNLDDFVQSKSQVGPS 180
Query: 610 VAYDAVSVNELRKWNEMYGEGGTRTKSPFGFGQNN 644
VAYDAVSVNELRKWNEMYGEGGTRT+SPFGFG NN
Sbjct: 181 VAYDAVSVNELRKWNEMYGEGGTRTQSPFGFGPNN 285
>TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
partial (74%)
Length = 1060
Score = 177 bits (448), Expect = 6e-45
Identities = 92/200 (46%), Positives = 130/200 (65%), Gaps = 3/200 (1%)
Frame = +1
Query: 348 VKFDDIGALEDVKKALNELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALA 407
+K++D+ LE K++L E VILP++ P+ FT RP + LL+GPPGTGK+ +AKA+A
Sbjct: 454 IKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKR--RPWRAFLLYGPPGTGKSYLAKAVA 627
Query: 408 TEAGANFISVSGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 467
TEA + F SVS S L SKW G++EKL LF A + AP IIFVDE+DSL G RG E
Sbjct: 628 TEADSTFFSVSSSDLGSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNES 807
Query: 468 EATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDADNRK 527
EA+RR++ E + G+ +Q++L+L ATN P+ LD A+ RR +RIY+ LPD R+
Sbjct: 808 EASRRIKTELLVQMQGV-GNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDVKARQ 984
Query: 528 KILRIIL---KHENLDPDFQ 544
+ ++ L H + DF+
Sbjct: 985 HMFKVHLGDTPHNLAESDFE 1044
>AV408284
Length = 425
Score = 176 bits (446), Expect = 1e-44
Identities = 86/142 (60%), Positives = 109/142 (76%)
Frame = +1
Query: 356 LEDVKKALNELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFI 415
LE +K+AL ELVILP++RP+LF+HG LL P KG+LL+GPPGTGKT++AKA+A E+GA FI
Sbjct: 1 LESIKEALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI 180
Query: 416 SVSGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRN 475
+V S L SKWFGDA+KL A+FS A KL P IIF+DEVDS LG R +HEA M+
Sbjct: 181 NVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQR-RTTDHEALLNMKT 357
Query: 476 EFMAAWDGLRSKENQRILILGA 497
EFMA WDG + +N R+++L A
Sbjct: 358 EFMALWDGFTTDQNARVMVLAA 423
>TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (TAT-binding
homolog 4), partial (20%)
Length = 389
Score = 175 bits (443), Expect = 2e-44
Identities = 83/126 (65%), Positives = 102/126 (80%)
Frame = +3
Query: 363 LNELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTL 422
L ELV+LP++RPELF G L +P KGILLFGPPGTGKT++AKA+ATEAGANFI++S S++
Sbjct: 12 LKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 191
Query: 423 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWD 482
TSKWFG+ EK KA+FS ASK++P +IFVDEVD +L R EHEA R+M NEFM WD
Sbjct: 192 TSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDXMLXRRENPGEHEAMRKMXNEFMVHWD 371
Query: 483 GLRSKE 488
GL SK+
Sbjct: 372 GLPSKQ 389
>TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%)
Length = 532
Score = 155 bits (393), Expect = 1e-38
Identities = 82/179 (45%), Positives = 119/179 (65%), Gaps = 1/179 (0%)
Frame = +1
Query: 373 RPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLTSKWFGDAEK 432
+P+ FT LL P KGILLFGPPGTGKT++AKA+ATE F ++S S++ SKW GD+EK
Sbjct: 1 QPKYFT--GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEK 174
Query: 433 LTKALFSFASKLAPVIIFVDEVDSLLGARGGA-FEHEATRRMRNEFMAAWDGLRSKENQR 491
L K LF A AP IF+DE+D+++ RG A EHEA+RR++ E + DGL ++ ++
Sbjct: 175 LVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TRTDEL 351
Query: 492 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDADNRKKILRIILKHENLDPDFQFDKLAN 550
+ +L ATN P++LD A++RRL +RI V LP+ + R + +L + + +D L N
Sbjct: 352 VFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVN 528
>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;}, partial (87%)
Length = 1385
Score = 144 bits (363), Expect = 4e-35
Identities = 87/230 (37%), Positives = 133/230 (57%), Gaps = 5/230 (2%)
Frame = +3
Query: 350 FDDIGALEDVKKALNELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATE 409
+D IG L+ K + E++ LP++ PELF + +P KG+LL+GPPGTGKTL+A+A+A
Sbjct: 324 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHH 500
Query: 410 AGANFISVSGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR---GGAFE 466
FI VSGS L K+ G+ ++ + LF A + AP IIF+DE+DS+ AR G
Sbjct: 501 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGXG 680
Query: 467 HEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAD 524
+R E + DG + + +I +L ATNR LD A++R R+ R+I P+ +
Sbjct: 681 DSEVQRTMLELLNQLDGFEA--SNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEE 854
Query: 525 NRKKILRIILKHENLDPDFQFDKLANLTDGYSGSDLKNLCITAAYRPVQE 574
+R+ IL+I + NL K+A +G SG++LK +C A ++E
Sbjct: 855 SRQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 1004
>TC18639 similar to UP|Q9LPN2 (Q9LPN2) F2J10.1 protein, partial (4%)
Length = 558
Score = 123 bits (309), Expect = 8e-29
Identities = 75/124 (60%), Positives = 83/124 (66%)
Frame = +3
Query: 113 YFPDGSQWLHKSVPKSIRSEFFHKVEEMFDQLSGPIVLICGQNKAQSGTKEKGQFTMILP 172
YFPDG LHKS PKSI+SEFF KV+E F+ LSGPIVLICGQN+AQS KGQ +
Sbjct: 3 YFPDG---LHKSGPKSIQSEFFQKVQEKFELLSGPIVLICGQNQAQS----KGQLLFSM- 158
Query: 173 NFARLAKLPLSLKRLTDKGQKTSDDDEINKLFSNVVSIQPPKDENLLATFKKQLEEDRKI 232
+KGQKTS D EI K F NV+SIQPPKDE LL FKK LEEDRKI
Sbjct: 159 ----------------NKGQKTSKDGEIYKPF-NVLSIQPPKDEKLLVIFKKXLEEDRKI 287
Query: 233 VISR 236
VIS+
Sbjct: 288 VISQ 299
>TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase subunit
RPT2a, partial (69%)
Length = 916
Score = 119 bits (298), Expect = 2e-27
Identities = 73/183 (39%), Positives = 107/183 (57%), Gaps = 5/183 (2%)
Frame = +1
Query: 350 FDDIGALEDVKKALNELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATE 409
+ DIG L+ + + E V LP+ PEL+ + +P KG++L+G PGTGKTL+AKA+A
Sbjct: 379 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANS 555
Query: 410 AGANFISVSGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF---E 466
A F+ V GS L K+ GD KL + LF A L+P I+F+DE+D++ R A E
Sbjct: 556 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE 735
Query: 467 HEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAD 524
E R M E + DG S+ + ++++ ATNR LD A++R R+ R+I LPD
Sbjct: 736 REIQRTML-ELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDTK 906
Query: 525 NRK 527
R+
Sbjct: 907 TRR 915
>TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), partial (32%)
Length = 1418
Score = 114 bits (285), Expect = 5e-26
Identities = 60/125 (48%), Positives = 82/125 (65%)
Frame = +2
Query: 338 SAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFTHGNLLRPVKGILLFGPPGT 397
SA+ P VK++D+G LEDVKK++ + V LP+ +LF G LR G+LL+GPPGT
Sbjct: 185 SALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASG--LRKRSGVLLYGPPGT 358
Query: 398 GKTLMAKALATEAGANFISVSGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSL 457
GKTL+AKA+ATE NF+SV G L + + G++EK + +F A P +IF DE+DSL
Sbjct: 359 GKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSL 538
Query: 458 LGARG 462
A G
Sbjct: 539 APASG 553
>CB826675
Length = 551
Score = 97.8 bits (242), Expect = 5e-21
Identities = 47/108 (43%), Positives = 69/108 (63%)
Frame = +1
Query: 350 FDDIGALEDVKKALNELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATE 409
++D+G LE + L E ++LPM E F + RP KG+LL+GPPGTGKTLMA+A A +
Sbjct: 133 YNDVGGLEKQIQELVEAIVLPMTHKERFQKLGV-RPPKGVLLYGPPGTGKTLMARACAAQ 309
Query: 410 AGANFISVSGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSL 457
A F+ ++G L + GD KL + F A + +P IIF+DE+D++
Sbjct: 310 TNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAI 453
>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
6B homolog, partial (65%)
Length = 901
Score = 96.7 bits (239), Expect = 1e-20
Identities = 54/141 (38%), Positives = 85/141 (59%)
Frame = +3
Query: 321 SQSLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFTHG 380
S +L ++ E +S+ IS + + V ++DIG + K+ + E V LP+ EL+
Sbjct: 411 SNALVDVLPPEADSS-ISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 587
Query: 381 NLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLTSKWFGDAEKLTKALFSF 440
+ P +G+LL+GPPGTGKT++AKA+A A FI V GS K+ G+ ++ + +F
Sbjct: 588 GI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRL 764
Query: 441 ASKLAPVIIFVDEVDSLLGAR 461
A + AP IIF+DEVD++ AR
Sbjct: 765 AKENAPAIIFIDEVDAIATAR 827
>TC9326 homologue to UP|Q93WX4 (Q93WX4) Suppressor of K+ transport growth
defect-like protein (Fragment), partial (73%)
Length = 894
Score = 94.4 bits (233), Expect = 5e-20
Identities = 64/224 (28%), Positives = 111/224 (48%), Gaps = 30/224 (13%)
Frame = +2
Query: 446 PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLD 505
P FVDE+DSL G RG E EA+RR++ E + G+ + + Q++L+L ATN P+ LD
Sbjct: 8 PFYHFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNND-QKVLVLAATNTPYALD 184
Query: 506 DAVIRRLPRRIYVDLPDADNRKKILRIIL---KHENLDPDFQFDKLANLTDGYSGSDLKN 562
A+ RR +RIY+ LPD R+ + ++ L H + DF++ LA+ T+G+SGSD+
Sbjct: 185 QAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLNESDFEY--LASRTEGFSGSDISV 358
Query: 563 LCITAAYRPVQ---------------------------ELLEEEKAGDNNITNVALRPLN 595
+ PV+ ++ ++ A + + P+
Sbjct: 359 CVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGAVQITMQDLAAKGLASQILPPPIT 538
Query: 596 LDDFVQSKSKVGPSVAYDAVSVNELRKWNEMYGEGGTRTKSPFG 639
DF + ++ P+V+ + V+E ++ + +GE G R + G
Sbjct: 539 RTDFEKVLARQRPTVSKKDLEVHE--RFTKEFGEEG*RRWNHIG 664
>BP056372
Length = 632
Score = 89.7 bits (221), Expect = 1e-18
Identities = 43/48 (89%), Positives = 45/48 (93%)
Frame = -3
Query: 580 KAGDNNITNVALRPLNLDDFVQSKSKVGPSVAYDAVSVNELRKWNEMY 627
KAGD+NITNVALRPL LDDFV SKS+VGPSVAYD VSVNELRKWNEMY
Sbjct: 600 KAGDHNITNVALRPLYLDDFVPSKSQVGPSVAYDXVSVNELRKWNEMY 457
>TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S
proteasome subunit 7) (26S proteasome AAA-ATPase subunit
RPT1a) (Regulatory particle triple-A ATPase subunit 1a),
partial (46%)
Length = 867
Score = 88.6 bits (218), Expect = 3e-18
Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 5/158 (3%)
Frame = +2
Query: 415 ISVSGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR---GGAFEHEATR 471
I V GS L K+ G+ ++ + LF A I+F DEVD++ GAR G ++E R
Sbjct: 2 IRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 181
Query: 472 RMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIR--RLPRRIYVDLPDADNRKKI 529
M E + DG ++ N ++L+ ATNRP LD A++R RL R++ LPD ++R +I
Sbjct: 182 TML-EIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQI 352
Query: 530 LRIILKHENLDPDFQFDKLANLTDGYSGSDLKNLCITA 567
+I + N + D +F+ L+ L +G+D++++C A
Sbjct: 353 FKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEA 466
>CN825587
Length = 663
Score = 88.6 bits (218), Expect = 3e-18
Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Frame = +2
Query: 441 ASKLAPVIIFVDEVDSL-----LGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILIL 495
A AP I+F+DE+D++ G GG E E T N+ + DG N +++L
Sbjct: 2 AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTI---NQLLTEMDGFSG--NSGVIVL 166
Query: 496 GATNRPFDLDDAVIR--RLPRRIYVDLPDADNRKKILRIILKHENLDPDFQFDKLANLTD 553
ATNRP LD A++R R R++ VD PD R KIL++ + + L D FDK+A T
Sbjct: 167 AATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTP 346
Query: 554 GYSGSDLKNL----CITAAYRPVQELLEEE 579
G++G+DL+NL I AA R ++E+ ++E
Sbjct: 347 GFTGADLQNLMNEAAILAARRDLKEISKDE 436
>AV421390
Length = 409
Score = 82.4 bits (202), Expect = 2e-16
Identities = 49/112 (43%), Positives = 65/112 (57%)
Frame = +2
Query: 350 FDDIGALEDVKKALNELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATE 409
F D+ +D K+ L E+V +R P FT P KGILL G PGTGKTL+AKA+A E
Sbjct: 68 FKDVKGCDDAKQELEEVVEY-LRNPAKFTRLGGKLP-KGILLTGAPGTGKTLLAKAIAGE 241
Query: 410 AGANFISVSGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 461
AG F +GS + G + ++LF A K AP IIF+DE+D++ R
Sbjct: 242 AGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 397
>TC16655 homologue to UP|O99018 (O99018) Chloroplast protease precursor,
partial (39%)
Length = 934
Score = 76.3 bits (186), Expect = 1e-14
Identities = 43/99 (43%), Positives = 59/99 (59%)
Frame = +3
Query: 347 GVKFDDIGALEDVKKALNELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKAL 406
GV FDD+ +++ K+ E+V +++PE FT P KG+LL GPPGTGKTL+AKA+
Sbjct: 642 GVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIP-KGVLLIGPPGTGKTLLAKAI 815
Query: 407 ATEAGANFISVSGSTLTSKWFGDAEKLTKALFSFASKLA 445
A EAG F S+SGS + G + LF A + A
Sbjct: 816 AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA 932
>CN825067
Length = 687
Score = 76.3 bits (186), Expect = 1e-14
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Frame = +1
Query: 385 PVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLTSKWFGDAEKLTKALFSFASK- 443
P + +L +GPPGTGKT+ A+ LA ++G ++ ++G + K+ + LF ++ K
Sbjct: 187 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGSQAVTKIHE-LFDWSKKS 363
Query: 444 LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFD 503
+++F+DE D+ L R + EA R N + G +SK+ I++ ATNRP D
Sbjct: 364 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TGDQSKD---IVLALATNRPGD 531
Query: 504 LDDAVIRRLPRRIYVDLPDADNRKKILRIIL 534
LD AV R+ + LP R K+L++ L
Sbjct: 532 LDSAVADRIDEVLEFPLPGEGERYKLLKLYL 624
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,854,385
Number of Sequences: 28460
Number of extensions: 117989
Number of successful extensions: 677
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of query: 645
length of database: 4,897,600
effective HSP length: 96
effective length of query: 549
effective length of database: 2,165,440
effective search space: 1188826560
effective search space used: 1188826560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0135.9