BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.24
(366 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV767121 130 4e-31
AV780221 102 1e-22
TC18710 83 8e-17
AV780705 72 1e-13
CB828232 59 2e-09
BP060613 56 1e-08
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 51 3e-07
BP083121 35 0.001
AV426437 33 0.075
BP085058 30 0.83
AV421099 29 1.4
AV772436 28 1.8
AV410933 28 1.8
TC10483 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (... 28 1.8
BP043629 28 2.4
TC19187 28 3.1
TC15890 similar to UP|Q9FFL2 (Q9FFL2) Nucleolar protein-like, pa... 27 4.1
TC15785 similar to UP|Q94BV7 (Q94BV7) AT4g05020/T32N4_4, partial... 27 4.1
AV771839 27 5.4
BP052360 27 5.4
>AV767121
Length = 525
Score = 130 bits (326), Expect = 4e-31
Identities = 60/113 (53%), Positives = 78/113 (68%)
Frame = +2
Query: 254 LQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQMDFLWGREVGAGK 313
L WKQK +SFGG++ LI+SVL+++PLF+LSFFK P G+ K C R+ +FLWG K
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 314 ICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDRLWGEVLSSR 366
I KW+ VCK KE GLG+KDL FN+AL+ K RWR L E D LW V+ ++
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQ 340
>AV780221
Length = 461
Score = 102 bits (254), Expect = 1e-22
Identities = 53/97 (54%), Positives = 66/97 (67%), Gaps = 1/97 (1%)
Frame = +3
Query: 268 VCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQMDFLWGREVGAGK-ICWAKWSTVCKIK 326
+CLI+SVL ++PLF+L FFK P G D +GREV GK I W KWSTVC+ K
Sbjct: 3 LCLIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPK 182
Query: 327 EEEGLGVKDLERFNRALMSKWRWRNLGEEDRLWGEVL 363
+E GLGV++L FN+AL+ KWRWR L E D LW +VL
Sbjct: 183 DEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVL 293
>TC18710
Length = 843
Score = 82.8 bits (203), Expect = 8e-17
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Frame = +2
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG---KECMIFKVDYK 57
K+ R+ + ++I QS FI GR + D++L+ E R G + I K+D
Sbjct: 404 KIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGALGRNHSIIKLDMN 583
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V FL + GF W+ I + + + +NG + + QRGLRQGDP
Sbjct: 584 KAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQRGLRQGDP 763
Query: 118 LAPFLFLVVAEWLSGLMRQA 137
+P+LFL E LS L++ +
Sbjct: 764 FSPYLFLFTMEVLSLLIQNS 823
>AV780705
Length = 524
Score = 72.4 bits (176), Expect = 1e-13
Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Frame = -2
Query: 216 MLNCRVMKEPFTYLGI--FVGANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKS 273
+L+ + +P YLG+ G N +W + K+K++L+ WK+ +L+ GK LIK+
Sbjct: 520 LLHMPIWDDPGHYLGLPAIWGRNKSHSLVW--IEEKVKEKLEGWKETLLNQAGKEVLIKA 347
Query: 274 VLSSIPLFYLSFFKFPRGIAKECKRIQMDFLW-GREVGAGKICWAKWSTVCKIKEEEGLG 332
++ +IP + ++ FP+ + DF W + GA + A + KE+ G+G
Sbjct: 346 IIQAIPSYAMTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVG 167
Query: 333 VKDLERFNRALMSKWRWRNLGEEDRLWGEVLSS 365
+DL N A +++ WR L + LW V+ S
Sbjct: 166 FRDLRTQNLAFLARQAWRVLTNPEALWVRVMKS 68
>CB828232
Length = 532
Score = 58.5 bits (140), Expect = 2e-09
Identities = 30/50 (60%), Positives = 36/50 (72%)
Frame = +1
Query: 257 WKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQMDFLWG 306
WK LS G +VC K VLSS+PLF+LSFFK + +AK CK+IQ FLWG
Sbjct: 388 WKTLCLS-GARVCCFKMVLSSLPLFFLSFFKI-KCVAKVCKQIQSRFLWG 531
>BP060613
Length = 378
Score = 55.8 bits (133), Expect = 1e-08
Identities = 24/62 (38%), Positives = 36/62 (57%)
Frame = +1
Query: 304 LWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDRLWGEVL 363
+W G + W KW + ++K+E GLG KD E N+AL++K WR L D LW ++L
Sbjct: 43 VWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
Query: 364 SS 365
+
Sbjct: 223 KA 228
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 51.2 bits (121), Expect = 3e-07
Identities = 37/125 (29%), Positives = 61/125 (48%)
Frame = -3
Query: 154 EISLLQFLDDTLFIGEASTQNVLVLKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCF 213
EIS L F D+ + +++ ++ +L F+ LSGL N +K+ I + E T
Sbjct: 376 EISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEV-FILVKETTKNQI 200
Query: 214 ARMLNCRVMKEPFTYLGIFVGANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKS 273
ML + K P LG+ + S + LV + +LQ W + LS+ G++ LI S
Sbjct: 199 TNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINS 20
Query: 274 VLSSI 278
+L S+
Sbjct: 19 ILFSM 5
>BP083121
Length = 527
Score = 35.0 bits (79), Expect(2) = 0.001
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 120 PFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDG 152
P FL+VAE L+GL++Q +N FKG+ + G
Sbjct: 312 PSFFLIVAEGLNGLLKQVATINKFKGFTFHLRG 410
Score = 22.7 bits (47), Expect(2) = 0.001
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 104 EESVMQRGLRQGDPLAPFLF 123
+E M + L Q DP+A FLF
Sbjct: 263 KEFKMWKSLHQVDPMAAFLF 322
>AV426437
Length = 303
Score = 33.1 bits (74), Expect = 0.075
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = +1
Query: 313 KICWAKWSTVCKIKEEEGLGVKD 335
KI W W T+CK K GLGVK+
Sbjct: 226 KIAWINWETICKPKWLRGLGVKN 294
>BP085058
Length = 452
Score = 29.6 bits (65), Expect = 0.83
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 253 RLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQMDFLWGREVGAG 312
RL K +L+ ++ L K VLS+I ++ + P+ I + + F+W G
Sbjct: 212 RLAC*KAYLLNKPARLTLAKPVLSAISMYVMQLNWLPQSICDQICTVVRHFVWENVNGIP 391
Query: 313 KICW 316
+ W
Sbjct: 392 LVAW 403
>AV421099
Length = 428
Score = 28.9 bits (63), Expect = 1.4
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = +1
Query: 49 CMIFKVDY--KKAYDSVRSDFLYYMMRRLGFC-----EKWIGWIKACI-QSATVSVLVNG 100
C+ + +++ K + FL+Y+ + C E W GW CI S++ S+ +
Sbjct: 85 CLSYHLEFLNKMFHQKFAYSFLHYISKDPKICSLTGIEYWDGWGMVCIPPSSSSSLSSSS 264
Query: 101 SPTEESVMQRGLRQGDPLAP 120
S T SV LR L P
Sbjct: 265 SMTNHSVRMARLRTWRLLVP 324
>AV772436
Length = 424
Score = 28.5 bits (62), Expect = 1.8
Identities = 17/44 (38%), Positives = 23/44 (51%)
Frame = -3
Query: 211 QCFARMLNCRVMKEPFTYLGIFVGANPRRRSMWEPLVCKMKKRL 254
+CF R + R + P L ANPRRRS W P++ + RL
Sbjct: 362 RCFYR*MATRELHMPRLCL-----ANPRRRSRWTPVLKFSRPRL 246
>AV410933
Length = 422
Score = 28.5 bits (62), Expect = 1.8
Identities = 12/46 (26%), Positives = 23/46 (49%), Gaps = 4/46 (8%)
Frame = +1
Query: 292 IAKECKRIQMDFLWGREVGAGKICW----AKWSTVCKIKEEEGLGV 333
+A +CK +QM F GR + ++ W WS +C +++ +
Sbjct: 163 VAWDCKGVQMPFPSGRWISLTQVIWNGLIRLWSVLCILQQRRNFRI 300
>TC10483 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (24%)
Length = 552
Score = 28.5 bits (62), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 238 RRRSMWEPLVCKMKKRLQSWKQK 260
RRR W+P C+MK+R W +
Sbjct: 255 RRRFCWQPSWCRMKRRR*GWSSR 187
>BP043629
Length = 562
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/29 (48%), Positives = 16/29 (54%), Gaps = 1/29 (3%)
Frame = -3
Query: 336 LERFNRALMSKWRWR-NLGEEDRLWGEVL 363
LERF R + WR R + G D WGE L
Sbjct: 335 LERFRRRIRRSWRRRESFGGVDAFWGEDL 249
>TC19187
Length = 632
Score = 27.7 bits (60), Expect = 3.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = +1
Query: 60 YDSVRSDFLYYMMRRLGFCEKWI 82
YD R+DF+ +MM+ G E W+
Sbjct: 193 YDHKRTDFVVWMMKDYGVRESWV 261
>TC15890 similar to UP|Q9FFL2 (Q9FFL2) Nucleolar protein-like, partial (9%)
Length = 1066
Score = 27.3 bits (59), Expect = 4.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 305 WGREVGAGKICWAKWSTVCKIKEEE 329
W GA K CW W T K +E
Sbjct: 109 WSNSSGAKKACWCFWGTAGKFSFKE 183
>TC15785 similar to UP|Q94BV7 (Q94BV7) AT4g05020/T32N4_4, partial (43%)
Length = 854
Score = 27.3 bits (59), Expect = 4.1
Identities = 15/68 (22%), Positives = 34/68 (49%)
Frame = +3
Query: 216 MLNCRVMKEPFTYLGIFVGANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVL 275
++N ++EP TY+ + + R W+ L +++ Q+ ++ + S K C + SV
Sbjct: 543 LMNG*ELREPTTYMHLVIVLQ*TREKSWKILRQYLRRLTQTIQEPLQSKNCKRCCMTSVK 722
Query: 276 SSIPLFYL 283
++ Y+
Sbjct: 723 DTLRWSYI 746
>AV771839
Length = 605
Score = 26.9 bits (58), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +3
Query: 256 SWKQKMLSFGGKVCLIKSVLSSIPLFYLS 284
+W+QK+ F + L S +S +PLF S
Sbjct: 240 NWRQKVTKFSSTIQLNTSTISLLPLFTFS 326
>BP052360
Length = 519
Score = 26.9 bits (58), Expect = 5.4
Identities = 20/51 (39%), Positives = 24/51 (46%), Gaps = 3/51 (5%)
Frame = +3
Query: 156 SLLQFLDDTLFIGEASTQNVLVLKGMLRYFEL---LSGLKVNFSKNRFPGI 203
S L F DTL +G+ T N VL + FEL L V K R+ GI
Sbjct: 216 SQLCFAGDTLNVGQEITGNGTVLVSAAKKFELGFFSPDLNVTGGKGRYLGI 368
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,025,975
Number of Sequences: 28460
Number of extensions: 105130
Number of successful extensions: 696
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of query: 366
length of database: 4,897,600
effective HSP length: 92
effective length of query: 274
effective length of database: 2,279,280
effective search space: 624522720
effective search space used: 624522720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0134.24