TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0134.17
         (431 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662122                                                              129  7e-31
BP030435                                                              124  2e-29
TC10511 similar to UP|Q9ZWM6 (Q9ZWM6) Adenylyl cyclase associate...    33  0.091
TC19663 similar to UP|Q8H6S8 (Q8H6S8) Translation initiation fac...    29  1.7
AV776277                                                               28  3.8
TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein...    27  5.0
TC15595 homologue to UP|Q8L784 (Q8L784) Cytoplasmic aconitate hy...    27  5.0
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein...    27  6.5
TC14311 homologue to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein...    27  8.5

>BG662122 
          Length = 386

 Score =  129 bits (325), Expect = 7e-31
 Identities = 68/128 (53%), Positives = 87/128 (67%)
 Frame = +2

Query: 86  TAKEPLYPRKESFERRRPWHQTDSRRQEESGKSLNAHLTELLRKVKATHVVEAGEKETDP 145
           +A+E LYPR+E+ +RRRP     SRR+EE    LNAHLT++L+ VKA H+V    +   P
Sbjct: 5   SAREQLYPRREALDRRRP*QPMGSRRREED-MELNAHLTDILQDVKAAHMVGKSGQS*PP 181

Query: 146 PRVVVDKTKWCEYHRSAGYDTGDCFTLKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYK 205
           PR  +D TK CEY RS  +D  DCFTLK EIE+LI+ GR +  DRG R +G RQQG R +
Sbjct: 182 PRRGIDTTK*CEYRRSVVHDIDDCFTLKREIEKLIKMGRLKQYDRGSRQQGDRQQGGRLQ 361

Query: 206 GDR*QDDR 213
           GDR Q +R
Sbjct: 362 GDRQQGNR 385


>BP030435 
          Length = 533

 Score =  124 bits (312), Expect = 2e-29
 Identities = 76/198 (38%), Positives = 101/198 (50%)
 Frame = +1

Query: 156 CEYHRSAGYDTGDCFTLKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRR 215
           C YH++ G+ T +C TL+ E+ +LI  G+                               
Sbjct: 103 CVYHQAMGHITEECRTLQREVGKLIATGKP------------------------------ 192

Query: 216 DDRRRTPTSDKKETLATRKKGSEETFNKDLEPPVGTINTIAGGFGGGGDIASTRRRNVRA 275
                           TR +G      K        ++TIAGGFGGGG  ++ R+R  RA
Sbjct: 193 ----------------TRIQGGNAPVPKG-------VHTIAGGFGGGGITSAARKRYARA 303

Query: 276 VTSVREYEAPFGFHHPDIVISSADF*RIKTHKDDPVVVMIRINSFNVRRVLLNQGSSADI 335
           V +V E    FGF HP I  SS DF RIK H D+P+V+++R+N  NV+RVLL+QGSSADI
Sbjct: 304 VNTVTE--VLFGFSHPVITFSSDDFIRIKPHLDNPIVILLRVNQLNVQRVLLDQGSSADI 477

Query: 336 IYGDAFDQLGLTDKDLMP 353
           IYG  FD+LGL + DL P
Sbjct: 478 IYGGVFDRLGLNEADLTP 531


>TC10511 similar to UP|Q9ZWM6 (Q9ZWM6) Adenylyl cyclase associated protein,
           partial (41%)
          Length = 782

 Score = 33.1 bits (74), Expect = 0.091
 Identities = 21/49 (42%), Positives = 27/49 (54%), Gaps = 5/49 (10%)
 Frame = +1

Query: 223 TSDKKETLATRKKGS--EETFNKDLEPPVGTINTIAGGF---GGGGDIA 266
           TS KKE    R++GS  EE     LE  V  +  ++ GF   GGGGD+A
Sbjct: 70  TSQKKERARERERGSGMEEKLIGRLESAVARLEALSVGFQGGGGGGDVA 216


>TC19663 similar to UP|Q8H6S8 (Q8H6S8) Translation initiation factor,
           partial (10%)
          Length = 485

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 65  KSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEE 114
           +SK      +  DKK+    R  +E L  RKE+ ER++   +   R++EE
Sbjct: 144 ESKKNESKTKAADKKLPKHVREMQEALARRKEAEERKKREEEEKLRKEEE 293


>AV776277 
          Length = 480

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 80  IKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSL 119
           +++G R     +YPR+    RRR W ++  R +   GK L
Sbjct: 337 VRAGRRRCGR-IYPRRARRRRRRWWRRSMERERRGKGKGL 453


>TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein S2,
           partial (88%)
          Length = 1134

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 15/32 (46%), Positives = 19/32 (58%)
 Frame = +3

Query: 189 DRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRR 220
           DRG   RG   +G+R +GDR +  RRR   RR
Sbjct: 75  DRGGFGRGFGGRGDRGRGDRGRGGRRRTGGRR 170



 Score = 26.9 bits (58), Expect = 6.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 184 RSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRT 221
           ++++ +RG   RG   +G   +GDR + DR R  RRRT
Sbjct: 45  KTKMAERGGGDRGGFGRGFGGRGDRGRGDRGRGGRRRT 158


>TC15595 homologue to UP|Q8L784 (Q8L784) Cytoplasmic aconitate hydratase
           (At2g05710), partial (26%)
          Length = 1077

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
 Frame = -3

Query: 37  KVPCSVFREQEQASCDRGLIQRAPVGQGKSKAIRETIQRR----DKKIKSGERTAKEPLY 92
           K+  +  R+  Q S     ++R     G   A+ E  + R    D + KSG RTA E + 
Sbjct: 421 KLAATRLRKASQVS-----LERIFTSHGSDLAV-EAFENRSDGSDLRAKSGGRTAVEAVA 260

Query: 93  PRKESFE------------RRRPWHQTDSRRQEESG 116
           P  E  +            RRR     DSRR+EESG
Sbjct: 259 PAGERGDEGSGRRGGEGSARRRM--SEDSRREEESG 158


>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
            (75%)
          Length = 1708

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = -3

Query: 269  RRRNVRAVTSVREYEAPFGFHHPDIVISSA 298
            R R +R     +  +   GFHHPD+ + SA
Sbjct: 1313 RNRRLRQQAGHQSSKGSLGFHHPDLHLHSA 1224


>TC14311 homologue to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein, partial
           (97%)
          Length = 626

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 21/76 (27%), Positives = 29/76 (37%)
 Frame = +2

Query: 34  FLVKVPCSVFREQEQASCDRGLIQRAPVGQGKSKAIRETIQRRDKKIKSGERTAKEPLYP 93
           FL+ +     + QEQ    R   QR        +  R   QRR   ++      KEP   
Sbjct: 11  FLLSIKSISRKWQEQTRSQRRRSQR--------RRRRRPPQRRRSLVRRRRSRRKEPPPA 166

Query: 94  RKESFERRRPWHQTDS 109
            +   +RRR W  T S
Sbjct: 167 TRRRRDRRRTWRHTRS 214


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.143    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,413,084
Number of Sequences: 28460
Number of extensions: 75766
Number of successful extensions: 603
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of query: 431
length of database: 4,897,600
effective HSP length: 93
effective length of query: 338
effective length of database: 2,250,820
effective search space: 760777160
effective search space used: 760777160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)