TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0134.16
         (212 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP060610                                                               30  0.31
TC15995 similar to UP|CAD56664 (CAD56664) S locus F-box (SLF)-S5...    30  0.31
TC18652                                                                27  2.6
TC13059 weakly similar to UP|Q84RL9 (Q84RL9) Enolase, partial (29%)    27  3.5
BP052068                                                               26  5.9

>BP060610 
          Length = 303

 Score = 30.0 bits (66), Expect = 0.31
 Identities = 13/14 (92%), Positives = 14/14 (99%)
 Frame = -3

Query: 199 YVFDTMFLIMLDIL 212
           YVFDTMFLI+LDIL
Sbjct: 115 YVFDTMFLIILDIL 74


>TC15995 similar to UP|CAD56664 (CAD56664) S locus F-box (SLF)-S5 protein,
           partial (6%)
          Length = 579

 Score = 30.0 bits (66), Expect = 0.31
 Identities = 13/14 (92%), Positives = 14/14 (99%)
 Frame = +3

Query: 199 YVFDTMFLIMLDIL 212
           YVFDTMFLI+LDIL
Sbjct: 444 YVFDTMFLIILDIL 485


>TC18652 
          Length = 527

 Score = 26.9 bits (58), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 5   QVGLTVNLKNQEGTLKLSLLDYGCYVGDL 33
           Q  L  NLKN + T++L +  Y C  G+L
Sbjct: 307 QTILCRNLKNSKQTIRLEITSYNCTKGNL 221


>TC13059 weakly similar to UP|Q84RL9 (Q84RL9) Enolase, partial (29%)
          Length = 540

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 53  GGNIASSVEEAVSEKINEGIAKLDKFLQSLPKQ--IPLDKT 91
           G  +A +V+  ++EKI+E +  +D  LQS   Q  I LDKT
Sbjct: 287 GNGVAKAVKN-INEKISEALIGMDPTLQSQIDQAMIDLDKT 406


>BP052068 
          Length = 480

 Score = 25.8 bits (55), Expect = 5.9
 Identities = 14/47 (29%), Positives = 28/47 (58%)
 Frame = +3

Query: 60  VEEAVSEKINEGIAKLDKFLQSLPKQIPLDKTSALNVSFVGNPVLSN 106
           VE +++ + +EGI      L  L K   ++K+S+L++SF  + ++ N
Sbjct: 267 VEFSLTMQFHEGILLETLNLAVLGKPWEVEKSSSLSISFKSSHIIEN 407


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,039,230
Number of Sequences: 28460
Number of extensions: 33512
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of query: 212
length of database: 4,897,600
effective HSP length: 86
effective length of query: 126
effective length of database: 2,450,040
effective search space: 308705040
effective search space used: 308705040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)