TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0134.14
         (277 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP055633                                                               35  0.011
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ...    33  0.069
TC12682                                                                26  8.5

>BP055633 
          Length = 528

 Score = 35.4 bits (80), Expect = 0.011
 Identities = 32/113 (28%), Positives = 51/113 (44%)
 Frame = -2

Query: 132 FRTAFLEKYFPTSARDEREAQFLTLGQGSMTVPEYASKLESLAKHFQFFNNHVDERYMCK 191
           F+ A LE++  TS      A      +GS  V E+  + E  A   +     +DE +   
Sbjct: 509 FKEAMLEQFQLTSNSSPFAALLALKQEGS--VEEFVGQFERFAGMLK----GIDEEHYMD 348

Query: 192 RFLNGLRADIKDSVRPLGIIRFQALVEKATEVELMKNRRMNGAGTGGPMRSSS 244
            F+NGL+ +I   ++         +V+KA  VE  KN  ++ AG G   R +S
Sbjct: 347 IFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVE-QKNLAVSKAGIGSTSRYNS 192


>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
           [imported] - Agrobacterium                tumefaciens
           (strain C58, Dupont) {Agrobacterium tumefaciens;},
           partial (6%)
          Length = 561

 Score = 32.7 bits (73), Expect = 0.069
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -2

Query: 219 KATEVELMKNRRMNGA-----GTGGPMRSSSQDNLGKGRFQMKKPYQRPMGEGYTLG 270
           KA  +E + N R   A     G+GGP RS+      + +   KKP+QRP   G + G
Sbjct: 560 KAKSIEAIDNLRSRPAFRPNQGSGGPNRSAP-GRFDRNKSFQKKPFQRPQNRGTSSG 393


>TC12682 
          Length = 583

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 23/72 (31%), Positives = 34/72 (46%), Gaps = 4/72 (5%)
 Frame = -2

Query: 108 DAEYW--WKGTRG--IMRANHEEVN*NSFRTAFLEKYFPTSARDEREAQFLTLGQGSMTV 163
           +A+ W  W+G R   I++A   E     FR+AF+        R+  E  F + G  SMT+
Sbjct: 276 EAQKWGLWEGRRQFKILQAMRREF---MFRSAFVLSMI----RNLLETMFRS-GSASMTI 121

Query: 164 PEYASKLESLAK 175
           P Y   +  L K
Sbjct: 120 PSYTGAIFQLLK 85


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,484,225
Number of Sequences: 28460
Number of extensions: 36401
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of query: 277
length of database: 4,897,600
effective HSP length: 89
effective length of query: 188
effective length of database: 2,364,660
effective search space: 444556080
effective search space used: 444556080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)