BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.11
(238 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP043407 41 2e-04
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 33 0.044
TC11087 weakly similar to UP|Q8GS92 (Q8GS92) OJ1513_F02.5 protei... 33 0.057
TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase is... 33 0.057
AV779145 32 0.075
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 32 0.13
TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precurso... 31 0.17
TC16697 31 0.17
AV408190 31 0.22
TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate... 31 0.22
TC18617 weakly similar to UP|Q9FPQ5 (Q9FPQ5) Gamete-specific hyd... 30 0.28
BP035940 30 0.48
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 29 0.63
BP044109 29 0.63
AV423963 29 0.82
TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-... 29 0.82
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 28 1.1
TC16424 similar to UP|Q9FZF1 (Q9FZF1) T2E6.18, partial (39%) 28 1.4
TC13393 similar to UP|Q9FMU6 (Q9FMU6) Mitochondrial phosphate tr... 28 1.8
TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like... 27 2.4
>BP043407
Length = 472
Score = 40.8 bits (94), Expect = 2e-04
Identities = 17/27 (62%), Positives = 21/27 (76%)
Frame = -1
Query: 212 LVGPDDPPGFTAEHFAVAEIEREKSSM 238
LVGP+DPPGF AE+F A+ EREK +
Sbjct: 178 LVGPNDPPGFNAEYFLAADNEREKEDI 98
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 33.1 bits (74), Expect = 0.044
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +2
Query: 11 SPCPEGVSAGLKPSENSLQTTPSPNLT-EAGPAGA----SLARPASSQDEGANSQGSPVF 65
+P +S P +NS +TPSP LT A P A S A++ ++S SP
Sbjct: 134 APPTPPISPRAAPGKNSSPSTPSPALTPSAKPPSA*STTSATSSATTPWSSSSSSSSPSS 313
Query: 66 CSPSAETNHAISGDQAGPSASQQPSLIAFMLSN 98
+PS ++ S + P +S S A LS+
Sbjct: 314 GTPSPSSS---SSPSSSPGSSSSSSATALSLSS 403
>TC11087 weakly similar to UP|Q8GS92 (Q8GS92) OJ1513_F02.5 protein
(OJ1118_G09.13 protein), partial (6%)
Length = 689
Score = 32.7 bits (73), Expect = 0.057
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Frame = +1
Query: 11 SPCPEGVSAGLKPSEN----SLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFC 66
SP P + PS + S TP P+ T P+ S + A+S + + S C
Sbjct: 133 SPKPPATATTNSPSSSVSTSSGAPTPKPSRTTPSPSSNSASTTAASSSKSSTHPPSLTLC 312
Query: 67 SPSAETNH-----------AISGDQAGPSASQQPSLIA 93
PS+ T + +IS + GPS PS A
Sbjct: 313 LPSSPTPNTRL*ALGSRVTSISFSRTGPSRWPMPSTSA 426
>TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase isolog,
25331-24357 (At1g11090), partial (18%)
Length = 552
Score = 32.7 bits (73), Expect = 0.057
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Frame = +3
Query: 10 SSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPS 69
++P P G S S T+P + P ++ A P +S A S SP SPS
Sbjct: 225 TAPTPAG------SSRRSASTSPPGATPSSPPTSSATAAPTASAATSATSTASPPPRSPS 386
Query: 70 AETNHAIS-------GDQAGPSASQQPS 90
+ T+ A S A P A PS
Sbjct: 387 SSTSAAASPTPPFRPSSSASPWAGSPPS 470
>AV779145
Length = 417
Score = 32.3 bits (72), Expect = 0.075
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +2
Query: 10 SSPCPEGVSAGLKPSENSLQTTPSPNLT---EAGPAGASLARPASSQDEGANSQGSPVFC 66
+SP P S P + Q TPSP+ T P ASLA PA++ SP
Sbjct: 59 TSPSPARFSHSKPPPSPTTQPTPSPHGTPPHATAPGTASLAAPAAT---------SPPLT 211
Query: 67 SPSAETNHAISGDQAGPSASQQPS 90
SP + + + PS S PS
Sbjct: 212 SPLSPSPANSPPTPSPPSLSSPPS 283
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 31.6 bits (70), Expect = 0.13
Identities = 28/92 (30%), Positives = 37/92 (39%), Gaps = 4/92 (4%)
Frame = +3
Query: 2 PKHVGGAESSPCPEG-VSAGLKPSENSLQTTPSPNLTEAGPAGASL--ARPASSQDEGAN 58
P + +P P G SAG PS + T+PSP+ A PA + A SS +
Sbjct: 636 PSVLPSPAGAPVPAGGPSAGTPPSAS---TSPSPSPVSAPPAASPAPGAESPSSSPTSNS 806
Query: 59 SQGSPVFCSPSAETNHAISGDQA-GPSASQQP 89
G P SPS + G A P+ P
Sbjct: 807 PAGGPTATSPSPAGDSPAGGPPAPSPTTGDTP 902
>TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precursor (Atperox
P31) (ATP41) , partial (38%)
Length = 475
Score = 31.2 bits (69), Expect = 0.17
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = +1
Query: 10 SSPCPEGVSAGLKPSENSLQTTPSPNLTEAG-------PAGASLARPASS 52
S P S+ LKP NSL TPSP T + P A+L P+SS
Sbjct: 325 SPATPSTSSSELKPPSNSLAPTPSPAPTSSPPPPATS*PCSAALTSPSSS 474
>TC16697
Length = 635
Score = 31.2 bits (69), Expect = 0.17
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = -1
Query: 10 SSPCPEGVS------AGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSP 63
SSP P S A PS +S P+P+ T+ + A P+ ++SQGSP
Sbjct: 548 SSPSPPAPSQRKPAPATAPPSNSSQSPPPNPSSTDP-TSPAPQPHPSHLSPASSSSQGSP 372
Query: 64 VFCSPSAETNHAISGDQAGP--SASQQPSL 91
V PS + I+ + P +S+QP L
Sbjct: 371 V---PSPSPSPPITSPSSPPIGDSSRQPRL 291
>AV408190
Length = 382
Score = 30.8 bits (68), Expect = 0.22
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Frame = +3
Query: 8 AESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASS-----QDEGANSQGS 62
A ++P ++G PS SLQTTP +L + PA ++ARP SS N+ G
Sbjct: 75 ASAAPIQSSTASG-SPSL-SLQTTP*TSLLSSPPA-PTMARPPSSTLPLAASSPTNTSGP 245
Query: 63 PVF----CSPSAETNHAISGDQAGPSASQQPS 90
P SP+ + A S P+ S PS
Sbjct: 246 PSTPSPPLSPTWASERATSSSSFPPTPSTSPS 341
>TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (29%)
Length = 576
Score = 30.8 bits (68), Expect = 0.22
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Frame = +1
Query: 7 GAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASS-------QDEGANS 59
GA + P P S G +S T P T P ++ A ASS +
Sbjct: 271 GAPTPPTPHAASPGASACRSSQNQTSPPETTLTPPTSSAPATSASSSPPHTLPKSPSPPP 450
Query: 60 QGSPVFCSPSAETNHAISGDQAGPSASQQPS 90
SP+ P A + + + PS S+ P+
Sbjct: 451 PPSPLSPPPPASPSPPPTASPSAPSPSKSPT 543
>TC18617 weakly similar to UP|Q9FPQ5 (Q9FPQ5) Gamete-specific
hydroxyproline-rich glycoprotein a2, partial (13%)
Length = 578
Score = 30.4 bits (67), Expect = 0.28
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 6 GGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVF 65
G ++S PC P + QT P T + A+ +RP S+ G+N +G P+
Sbjct: 264 GSSKSPPCLT------PPRHHRHQTPPPQKPTSSASTAATASRPRSASPTGSN-RGYPLI 422
Query: 66 CSPSAETNHA 75
SP ++ A
Sbjct: 423 PSPHGASSPA 452
>BP035940
Length = 396
Score = 29.6 bits (65), Expect = 0.48
Identities = 16/54 (29%), Positives = 27/54 (49%)
Frame = +3
Query: 10 SSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSP 63
+S P + S ++ Q TPS + P+GAS++ P +S A++ SP
Sbjct: 228 TSSQPSSLHRDRSNSRHTFQQTPSNLCSSEEPSGASISPPPASSLSAASAHPSP 389
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 29.3 bits (64), Expect = 0.63
Identities = 24/84 (28%), Positives = 33/84 (38%), Gaps = 1/84 (1%)
Frame = +2
Query: 7 GAESSPCPEGVSAGLKPSENSLQ-TTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVF 65
G SSP P S+ S ++ T+PSP+ T GPA + A A + P
Sbjct: 149 GPASSPTPATQSSPAAASSSTPSPTSPSPSQTLTGPAASGPAPAAPT---------PPAT 301
Query: 66 CSPSAETNHAISGDQAGPSASQQP 89
SP+ A P+ QP
Sbjct: 302 ASPAHPATAAAVSSAPAPAVPPQP 373
>BP044109
Length = 497
Score = 29.3 bits (64), Expect = 0.63
Identities = 22/89 (24%), Positives = 33/89 (36%)
Frame = +2
Query: 2 PKHVGGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQG 61
P H A S P + P + P P+ P+ + P+SS A +
Sbjct: 152 PSHASNATSKSTPRTQTPTTPPPSPTSSPKPPPSTFATKPSTSPPETPSSSSHGPAPTLP 331
Query: 62 SPVFCSPSAETNHAISGDQAGPSASQQPS 90
SP PS+ T + + P+ S PS
Sbjct: 332 SP----PSSSTPTSTPSPPSPPNGSTLPS 406
>AV423963
Length = 381
Score = 28.9 bits (63), Expect = 0.82
Identities = 37/133 (27%), Positives = 54/133 (39%), Gaps = 9/133 (6%)
Frame = +1
Query: 18 SAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDEGANSQGSPVFCSPSAETNHAIS 77
S L PS + PSP+ + + PA +A S N SPS +TN S
Sbjct: 1 SPSLSPSPS-----PSPSPSPSAPATPPIALKPPSPSPRRNDS------SPSPQTNSTSS 147
Query: 78 GDQAGPSASQQPSLIAFMLSNASLEVKAKTESVNAGKATCI-LQGQ-ENAFL-------Q 128
+ P + + AF+L + + KT V K L GQ + AF+ +
Sbjct: 148 KNHHVPILAGSAGVAAFLLISLTGIYLCKTNKVTTVKPWVTGLSGQLQKAFVTGVPKLKR 327
Query: 129 SELGATNEALADV 141
SEL A E ++V
Sbjct: 328 SELEAACEDFSNV 366
>TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-like
protein, partial (97%)
Length = 2230
Score = 28.9 bits (63), Expect = 0.82
Identities = 25/72 (34%), Positives = 30/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 2 PKHVGGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGAS-LARPASSQDEGANSQ 60
P G + SSP P SA + T+P P AG +G S A P S D A
Sbjct: 265 PCSCGPSSSSPSPLPTSASKASLTPAAATSPPPG---AGSSGRSKSAPPHRSTDRAACPS 435
Query: 61 GSPVFCSPSAET 72
SP + SA T
Sbjct: 436 SSPAPPASSAHT 471
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 28.5 bits (62), Expect = 1.1
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Frame = +3
Query: 65 FCSPSAETNHAISGD----------QAGPSASQQPSLIAFMLSNASLEVKAKTESVNAGK 114
FC+P ++ D Q PS S+ P + LSN + S+N+G
Sbjct: 108 FCTPQTSILEPLNSDISISDYFLPQQVVPSFSKPPRSSS-NLSNRKPSLNISIPSINSGL 284
Query: 115 ATCILQGQENAFLQSELGATNEALADVRSQLEAENQ 150
+ I Q +E +F S +++ + +D ++Q E N+
Sbjct: 285 KSNISQSKETSF--SHQSSSSSSSSDHQTQEEDNNK 386
>TC16424 similar to UP|Q9FZF1 (Q9FZF1) T2E6.18, partial (39%)
Length = 537
Score = 28.1 bits (61), Expect = 1.4
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +1
Query: 8 AESSPCPEGVSAGLKPSENSLQTTPSPNLTE-AGPAGASLARPASSQDEGANSQGS---- 62
+ SSP P +S++T SPN + + PA AS ARP+ S S S
Sbjct: 274 SSSSPLPR---------TSSVRTRTSPNASRPSSPASASAARPSGSGSSCRISTRSEPPI 426
Query: 63 --PVFCSPSAET 72
CSPS+ T
Sbjct: 427 QNATSCSPSSPT 462
>TC13393 similar to UP|Q9FMU6 (Q9FMU6) Mitochondrial phosphate translocator
(AT5g14040/MUA22_4), partial (8%)
Length = 541
Score = 27.7 bits (60), Expect = 1.8
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Frame = +1
Query: 5 VGGAESSPCPEGVSAGLKPSENSLQTTPSPNLTEAGPAGASLARPASSQDE--------- 55
+ + SSPC G PS +S P P T + + P S+ +
Sbjct: 7 LASSSSSPCQWGFRLVNPPSASSTFPNPPPTRTSSPSSSPHSVPPPSTPSKSFPITPTGS 186
Query: 56 -----GANSQGSPVFCSPSAETNHAISGDQAGPSASQQPSLIA 93
++S+ SP +PS N S SAS + +I+
Sbjct: 187 LAAPAASSSRTSPPSPAPSLSPNPRSSSSSPTSSASPKTPMIS 315
>TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
(52%)
Length = 765
Score = 27.3 bits (59), Expect = 2.4
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = -1
Query: 50 ASSQDEGANSQGSPVFCSPSAETNHAISGDQAGPSASQQPSLIAFMLSNAS 100
AS +++GSP+FC S+ SG PS+S S I+ S +S
Sbjct: 348 ASRLSSVTSTEGSPIFCGGSS------SGSTISPSSSISDSTISSSSSGSS 214
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.307 0.124 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,145,134
Number of Sequences: 28460
Number of extensions: 34143
Number of successful extensions: 243
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of query: 238
length of database: 4,897,600
effective HSP length: 87
effective length of query: 151
effective length of database: 2,421,580
effective search space: 365658580
effective search space used: 365658580
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0134.11