BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.10
(1564 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066094 142 5e-61
BP084332 106 5e-46
BP052756 83 3e-16
AV780009 80 2e-15
BP075943 72 7e-13
AV766665 57 3e-08
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 55 7e-08
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 50 3e-06
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 47 2e-05
TC9039 44 2e-04
AV424544 43 4e-04
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete 39 0.008
TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromos... 37 0.018
BP065763 36 0.041
BP039068 36 0.041
AV773507 33 0.46
TC17929 32 0.59
AV777635 32 0.59
TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526 At2g01... 32 0.78
TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retro... 29 6.6
>BP066094
Length = 532
Score = 142 bits (358), Expect(4) = 5e-61
Identities = 74/96 (77%), Positives = 83/96 (86%)
Frame = +1
Query: 1147 SNQTADLLLSKP*HNSTSDGC*ECIPKWIHIRGSLCSSTPRF*R*EEPRPCLQAEEISLW 1206
S QT DL+LS+ HNS+SD C*EC+ KW+H+RGSLCSSTPRF R*EE P Q EEISLW
Sbjct: 97 SYQTTDLILSESQHNSSSDEC*ECLSKWLHLRGSLCSSTPRFXR*EEL*PYFQIEEISLW 276
Query: 1207 SEASSQSMV*ETQLIPSGE*VCKG*SRYNSLLKNIQ 1242
SEASSQSMV*ETQLIPSG+*V KG*SRYNSLL+N+Q
Sbjct: 277 SEASSQSMV*ETQLIPSGK*VXKG*SRYNSLLQNLQ 384
Score = 95.5 bits (236), Expect(4) = 5e-61
Identities = 47/53 (88%), Positives = 49/53 (91%)
Frame = +2
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQ 1291
K ++DILIVQIYVDDIIFGSAN SLCKEFSEMMQAEFEM MMGELKYFLGIQ
Sbjct: 374 KTYKDDILIVQIYVDDIIFGSANPSLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 32.7 bits (73), Expect(4) = 5e-61
Identities = 14/22 (63%), Positives = 19/22 (85%)
Frame = +2
Query: 1126 RLQSAGRNRLH*NICSSSKTRS 1147
++QSA RNRL+*N+CS SKT +
Sbjct: 35 KVQSAVRNRLY*NVCSGSKTEA 100
Score = 24.6 bits (52), Expect(4) = 5e-61
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 1117 QKQGKASCSR 1126
QKQGKASCSR
Sbjct: 9 QKQGKASCSR 38
>BP084332
Length = 368
Score = 106 bits (264), Expect(3) = 5e-46
Identities = 60/62 (96%), Positives = 60/62 (96%)
Frame = +3
Query: 1497 H*VRILSYIQGQSTLR*IIILLEIMYRRAYFF*SLLILTINGQISLQSP*QRIDLISF*K 1556
H*VRILSYIQGQSTLR* I LLEIMYRRAYFF*SLLILTINGQISLQSP*QRIDLISF*K
Sbjct: 183 H*VRILSYIQGQSTLR*SITLLEIMYRRAYFF*SLLILTINGQISLQSP*QRIDLISF*K 362
Query: 1557 I* 1558
I*
Sbjct: 363 I* 368
Score = 96.3 bits (238), Expect(3) = 5e-46
Identities = 47/50 (94%), Positives = 47/50 (94%)
Frame = +2
Query: 1447 QSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQILESNISIYCDNTAAI 1496
QSTIALSTAEAEYI AICSTQMLWMKHQLEDYQILESNI IYCDNTAAI
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAI 181
Score = 21.6 bits (44), Expect(3) = 5e-46
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1432 CQFLGSNL 1439
CQFLGSNL
Sbjct: 4 CQFLGSNL 27
>BP052756
Length = 488
Score = 83.2 bits (204), Expect = 3e-16
Identities = 52/124 (41%), Positives = 82/124 (65%), Gaps = 2/124 (1%)
Frame = +1
Query: 256 KRPKKHFKTKKSLMVTFDESESEDVDY--DGEVQGLMDIVKDKGAESKDVVDSDSESEGD 313
KRP+K F TKK+L +TFD ++S++ + D V+ LM +GAE+ SE D
Sbjct: 151 KRPRKVF-TKKAL-ITFDATDSDEAESEEDEAVEALM-ATTSRGAEA---------SEDD 294
Query: 314 PNSDDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLKKDLSAASKTPYEHEKIISDL 373
+S++++EVF+ FS SEL+ ALS+IM K++ LL+KHK+LKK + + + HEK +S+L
Sbjct: 295 SDSENDDEVFSDFSLSELRTALSEIMKKHDILLNKHKELKKKYAVKTSSSEVHEKSVSEL 474
Query: 374 KNDN 377
++N
Sbjct: 475 IDEN 486
>AV780009
Length = 529
Score = 80.1 bits (196), Expect = 2e-15
Identities = 42/118 (35%), Positives = 69/118 (57%), Gaps = 4/118 (3%)
Frame = -1
Query: 1384 AVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSENCQFLGSNLVSWA 1443
A R+LRY+KG GL + KL Y D+D+AG R+S + FLG++L+SW
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1444 SKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQILESN----ISIYCDNTAAIH 1497
+K Q+T++ S++EAEY A ++ W+ + +Q L+ N + ++CDN +A+H
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYL---FQFLKLNVPLPVPLFCDNQSALH 182
>BP075943
Length = 547
Score = 72.0 bits (175), Expect = 7e-13
Identities = 43/155 (27%), Positives = 75/155 (47%), Gaps = 2/155 (1%)
Frame = -3
Query: 1250 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 1309
+YVDD++ + + + +F + +GE KYFLG+++ ++ G ++Q KY +
Sbjct: 515 LYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQ 336
Query: 1310 LLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKL--YHGMIGTLLYLTASRPDILFSV 1367
L+ + H T +G + Y ++G LLYL +RPDI F+V
Sbjct: 335 LISDSGHF-GFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITFAV 159
Query: 1368 HLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY 1402
+ ++F S P + H + L+YL G+ GL Y
Sbjct: 158 NQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFY 54
>AV766665
Length = 601
Score = 56.6 bits (135), Expect = 3e-08
Identities = 31/76 (40%), Positives = 42/76 (54%)
Frame = +3
Query: 1383 TAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSENCQFLGSNLVSW 1442
T RI YLK + G +++K + + G+ ADY G +R ST FL NLV+W
Sbjct: 360 TFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTW 539
Query: 1443 ASKWQSTIALSTAEAE 1458
SK Q+ IA S+ EAE
Sbjct: 540 RSKQQNIIARSSGEAE 587
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 55.5 bits (132), Expect = 7e-08
Identities = 31/121 (25%), Positives = 60/121 (48%), Gaps = 8/121 (6%)
Frame = +2
Query: 1243 NDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQV--DQTPEGTY 1300
ND +I+ +YVDD++ N+ +E + EF+M +G LG+Q+ D+ +
Sbjct: 80 NDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRRIW 259
Query: 1301 IHQSKYTKELLKKFNMLESTVAKTP------MHPTCILEKEDASGKVCQKLYHGMIGTLL 1354
+ Q Y +++L++FNM + TP + + I E ++ + Y +G+L+
Sbjct: 260 LSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLM 439
Query: 1355 Y 1355
Y
Sbjct: 440 Y 442
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 50.1 bits (118), Expect = 3e-06
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = -1
Query: 1303 QSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGK-VCQKLYHGMIGTLLYLTASRP 1361
Q Y ++LKKF M S T + I GK V Y +IG++ YL R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 1362 DILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGL 1400
DI+ V L +RF +P + H +R LRY+KGT G+
Sbjct: 559 DIVCGVGLRSRFM-EP*DCH*QGAQRSLRYIKGTLKDGI 446
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 47.4 bits (111), Expect = 2e-05
Identities = 31/78 (39%), Positives = 44/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 1440 VSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQILESNISIYCDNTAAIH*V 1499
V+W S+ Q +ALSTAEAE+I ++LWMK+ L++ I T A+ +
Sbjct: 27 VAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFLQNAWFHSHPILCCIVITKALFTL 206
Query: 1500 -RILSYIQGQSTLR*III 1516
RIL +IQ STL +II
Sbjct: 207 ARILLFIQDPSTLMFVII 260
>TC9039
Length = 1218
Score = 43.9 bits (102), Expect = 2e-04
Identities = 50/221 (22%), Positives = 89/221 (39%), Gaps = 2/221 (0%)
Frame = +2
Query: 33 RSEMTADQKKLYSQHHKARAILLSAIS--YEEYEKITDREYAKGIFESLKMSHEGNKKVK 90
R T++Q+K Y + ++ + L I E + T E KG + L + K
Sbjct: 263 RKSSTSEQRKDYEKWDRSNRMSLMIIKRGIPEVFRGTISEEIKGAKDFLAEIEKRFAKSD 442
Query: 91 ESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKYHVIRVIRSLPESW 150
+++ +L+Q S + +I E + + ++ L + + V+ SLP +
Sbjct: 443 KAETSTLLQNLISMKYQGKGNIREYIMGMSNIASKLKALKLELSDDLLIHLVLLSLPAQF 622
Query: 151 MPLVTSIELTRDVERMSLEELISILKCHELKHSEMLDSDEDELTLISKRLNRIWKHKQSK 210
S + E+ SL ELIS ++ E L + E S K K K
Sbjct: 623 SQFKISYNCPK--EKWSLNELISFC----VQEEERLKQERKE----SAHFVSTSKDK-GK 769
Query: 211 YRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPK 251
+ + + K ++ + K ++ TC+ C SGH K C K
Sbjct: 770 RKKTVEPKNEAADAPAPKKQKEDDTCYFCNVSGHMKKKCTK 892
>AV424544
Length = 276
Score = 42.7 bits (99), Expect = 4e-04
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +3
Query: 1247 IVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKY 1306
++ +YVDD+I + + + + +F + +G LKYFLG++V ++ G ++ Q KY
Sbjct: 96 VILVYVDDLILAGNDLNEIQCVKNKLDIQFRIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
Length = 1064
Score = 38.5 bits (88), Expect = 0.008
Identities = 50/188 (26%), Positives = 79/188 (41%), Gaps = 15/188 (7%)
Frame = +3
Query: 217 AKGKSESSG-------QKKSS--IKEVTCFECKESGHYKSDCPKLKK-----DKRPKKHF 262
AKG +E G QK SS I T + + G D K + ++R ++HF
Sbjct: 186 AKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPRRDGQDTQDELKRRNLRDELEERERRHF 365
Query: 263 KTK-KSLMVTFDESESEDVDYDGEVQGLMDIVKDKGAESKDVVDSDSESEGDPNSDDENE 321
+K KS D +S + +G + + D + A S D DSD E + D SDD++
Sbjct: 366 SSKNKSYSDDRDHGKSSHLFLEGTKRDVEDHIV---ARSVDADDSDVEVKSDEESDDDD- 533
Query: 322 VFASFSTSELKHALSDIMDKYNSLLSKHKKLKKDLSAASKTPYEHEKIISDLKNDNHALV 381
D D +LL++ +++KK+ A K E + +LK L+
Sbjct: 534 ---------------DDEDDTEALLAELEQIKKE-RAEEKLRKERLEQEEELKVKEAELL 665
Query: 382 NSNSVLKN 389
N +L N
Sbjct: 666 RGNPLLNN 689
>TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromosome 3, P1
clone: MSJ11, partial (39%)
Length = 1403
Score = 37.4 bits (85), Expect = 0.018
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 28/137 (20%)
Frame = +3
Query: 210 KYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKRPKKHF------K 263
K RG + K ++SG+++ +E E +E+G K D K +D+ + K
Sbjct: 384 KKRGKRSSASKKDASGEEEK--EETKDVEMQEAGETK-DAVKENQDENKAEDTDVNQDEK 554
Query: 264 TKKSLMVTFDESESEDVDY----------------------DGEVQGLMDIVKDKGAESK 301
++ DE +ED D D E+Q + V DKGAE
Sbjct: 555 KAEATDANQDEKRAEDADVKEPTHPGENTDGPNDEGKLNTADEELQASKEKVDDKGAEGS 734
Query: 302 DVVDSDSESEGDPNSDD 318
D V + + G+P +
Sbjct: 735 DAVQNKDDGSGEPEKSE 785
>BP065763
Length = 537
Score = 36.2 bits (82), Expect = 0.041
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 209 SKYRGSGKAKGKSESSGQKKSSI-KEVTCFECKESGHYKSDCPKLK 253
SK + K + K ++ K+ I KE C+ CK++GH+K CPK K
Sbjct: 465 SKAKPGRKEQKKDQALKVKEGRIHKEHVCYFCKKAGHFKKYCPKRK 328
>BP039068
Length = 467
Score = 36.2 bits (82), Expect = 0.041
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 212 RGSGKAKGK--SESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKRPKKH 261
R +A+G S SS ++ ++ C C+E+GH +DCP L R +H
Sbjct: 234 RMPARARGPTASTSSNVNHNNPRQTVCMNCQETGHASNDCPSLTLRSRNAQH 389
>AV773507
Length = 496
Score = 32.7 bits (73), Expect = 0.46
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 211 YRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCP 250
YRG G + G S G + + CFEC GH DCP
Sbjct: 278 YRGGGYSSGGRGSYGAG-DRVGQDDCFECGRPGHRARDCP 394
>TC17929
Length = 791
Score = 32.3 bits (72), Expect = 0.59
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +2
Query: 216 KAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPK 251
+A+ E+S + S TC+ C ESGH +CPK
Sbjct: 2 RAQIGEETSNRPNDSKFRQTCYRCGESGHKMRNCPK 109
>AV777635
Length = 382
Score = 32.3 bits (72), Expect = 0.59
Identities = 15/35 (42%), Positives = 23/35 (64%)
Frame = -2
Query: 1371 ARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT 1405
++F DP E HL RIL+YLK + GL+++K+
Sbjct: 381 SQFMHDPHERHLD---RILQYLKASPGRGLLFRKS 286
>TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526
At2g01100/F23H14.7 {Arabidopsis thaliana;}, partial
(33%)
Length = 902
Score = 32.0 bits (71), Expect = 0.78
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = +3
Query: 294 KDKGAESKDVVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLK 353
K K A+ K DSDSES+ D SDDE++ TS H Y+ S H+K K
Sbjct: 369 KLKAAKHKKRADSDSESDYD--SDDESK-----RTSRRSHRKHKKRSHYD---SDHEKRK 518
Query: 354 KDLSAASKTPYEHEKIISDLKNDNHALVNSNSVLKNQIAK---LEEVIACDASDS 405
+ LS + E SD D + + + K ++V D+SDS
Sbjct: 519 EKLSKRKTKKWSSES--SDFSGDESESRSEEERRRKRKQKKKLRDQVSRSDSSDS 677
>TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
polyprotein, partial (3%)
Length = 517
Score = 28.9 bits (63), Expect = 6.6
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = -1
Query: 1435 LGSNLVSWASKWQSTIALSTAEAEYILTA 1463
L NL+SW SK +A S AEAE+ + A
Sbjct: 517 LSDNLISWKSKETIIVARSRAEAEFRVMA 431
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.347 0.151 0.513
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,293,181
Number of Sequences: 28460
Number of extensions: 394125
Number of successful extensions: 3817
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 3701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3801
length of query: 1564
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1462
effective length of database: 1,994,680
effective search space: 2916222160
effective search space used: 2916222160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0134.10