TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0133.3
         (700 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC20179                                                                54  8e-08
TC15230 similar to GB|AAP75810.1|32189311|BT009660 At1g70180 {Ar...    45  4e-05
TC16544 similar to UP|Q9SFU7 (Q9SFU7) T1B9.17 protein (AT3g07170...    42  3e-04
BP037276                                                               34  0.090
TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, part...    32  0.34
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (...    29  2.9
TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pro...    29  2.9
BP074386                                                               28  5.0
TC12459                                                                28  5.0
AW720080                                                               28  5.0
AV411437                                                               28  6.5
TC14124 UP|Q8H945 (Q8H945) Phosphoenolpyruvate carboxylase  , co...    28  6.5

>TC20179 
          Length = 511

 Score = 53.9 bits (128), Expect = 8e-08
 Identities = 27/58 (46%), Positives = 37/58 (63%)
 Frame = +3

Query: 211 WLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHALCEFRKGIA 268
           WL  LGLG+Y  VF   EVD + L  LT EDL  MG++A+G R+K+  A+ +  KG +
Sbjct: 24  WLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYCAIQKLGKGFS 197


>TC15230 similar to GB|AAP75810.1|32189311|BT009660 At1g70180 {Arabidopsis
           thaliana;}, partial (11%)
          Length = 611

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = +2

Query: 212 LRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHAL 260
           L  LGLGKY  +F  EEVD   L+ + E DL  +G+  +GPRKKI+ AL
Sbjct: 116 LHALGLGKYVILFKAEEVDMTALKQMGENDLKELGI-PMGPRKKILLAL 259


>TC16544 similar to UP|Q9SFU7 (Q9SFU7) T1B9.17 protein (AT3g07170/T1B9_17),
           partial (33%)
          Length = 546

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 27/57 (47%), Positives = 36/57 (62%), Gaps = 4/57 (7%)
 Frame = +2

Query: 208 VVDWLRDLGLGKYEDVFVREE----VDWDTLQWLTEEDLLSMGVTALGPRKKIVHAL 260
           V ++L+ LGL KY   F  EE    VD   L  +T+EDL +MG+  +GPRKKI+ AL
Sbjct: 146 VDEFLQSLGLEKYLISFQAEELLFQVDMTALNHMTDEDLKAMGI-PMGPRKKILLAL 313


>BP037276 
          Length = 516

 Score = 33.9 bits (76), Expect = 0.090
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = +2

Query: 40  LKKHKLETTAFGGSGKENVPPNASSSTIHDDGYEIENCSLDFIPSTIDSVGTALTDSSSS 99
           LK H  E +    SGK+  P + S S   +  +     S +  PS+   V +  T  S+ 
Sbjct: 260 LKSHTYEKSELINSGKQISPMSKSKSKSVESSFSFPQGSNERTPSSSPLVKSLATAESNG 439

Query: 100 SSSASVSAFVISSPVKVKMKG 120
           S SAS + F + S + V + G
Sbjct: 440 SPSASSNNFAMKSSLCVCIGG 502


>TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, partial (4%)
          Length = 622

 Score = 32.0 bits (71), Expect = 0.34
 Identities = 21/58 (36%), Positives = 35/58 (60%)
 Frame = +1

Query: 58  VPPNASSSTIHDDGYEIENCSLDFIPSTIDSVGTALTDSSSSSSSASVSAFVISSPVK 115
           VPP++S+S       + + C++  I  +  S+  + T S+SSSS+ + S F ISSPV+
Sbjct: 55  VPPHSSTSL------QSQ*CTMTLITPSTSSISISST-STSSSSNNNRSIFTISSPVQ 207


>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
           protein) (Fragment), partial (15%)
          Length = 543

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 60  PNASSSTIHDDGYEIENCSLDFIPSTIDSVGTALTDSSSSSSSASVSAFVIS 111
           P+ S+S++        + S    PS+  S  ++ + SSSSSSS+S S+  +S
Sbjct: 400 PSTSTSSLPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSLS 245


>TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
           (LIM domain interacting RING finger protein) (RING
           finger LIM domain-binding protein) (R-LIM) (NY-REN-43
           antigen), partial (4%)
          Length = 526

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +3

Query: 82  IPSTIDSVGTALTDSSSSSSSASVSAFVISSPVK 115
           I S+  S  ++L DSSS SSS S S  V+ SP++
Sbjct: 174 ISSSAVSSASSLLDSSSPSSSPSSSPRVLDSPIR 275


>BP074386 
          Length = 496

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 3/166 (1%)
 Frame = +3

Query: 262 EFRKGIAASNEKPEDALAEPRRNRNQNVKMQPHRPERKVDGTSKPAANKKITEYFPGFAT 321
           E RKG  +++EKP DA    R  +N+             +   K    KK   Y     +
Sbjct: 72  EKRKGAGSTSEKPLDAKTLRRLAQNR-------------EAAKKSRLRKK--AYVQQLES 206

Query: 322 NGKKVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRDVPKWCSIEGTPFRVDAFKYLR 381
           +  K+S   ++ Q ++S G   G    G N S+   +             F ++  ++L 
Sbjct: 207 SRLKLSHLEQDLQRLRSQGLFLGCGVAGGNLSSGAAM-------------FDMEYARWLE 347

Query: 382 GDCSHWFLTHFHLDRTRL-LDLNIFDTDLRQM--GYLIKFECFARL 424
            D       H H+   R  L   + D +LR +  GYL  ++   RL
Sbjct: 348 DD-------HQHMAELRTGLQAPLSDNELRVIVDGYLYHYDELFRL 464


>TC12459 
          Length = 797

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 13/29 (44%), Positives = 15/29 (50%)
 Frame = +3

Query: 313 TEYFPGFATNGKKVSTAPEEQQEMKSSGS 341
           T YFP     G+    +PE QQE K  GS
Sbjct: 27  TRYFPASTCGGEDDRPSPEIQQEQKRRGS 113


>AW720080 
          Length = 394

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +3

Query: 288 NVKMQPHRPERKVDGTSKPAANKKITEYFPGFATNGKKVSTAPEEQQEMKSSGSVSGRN 346
           +V M P      VDGT  P+ + K         TNG  V +A     E  S+   SG+N
Sbjct: 90  SVSMAPSEEAXAVDGTLNPSEHGKSE------ITNGATVDSAAIGGAESASNAETSGKN 248


>AV411437 
          Length = 417

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -1

Query: 59  PPNASSSTIHDDGYEIENCSLDFIPSTIDSVGTALTDSSSSSSSASVSAFVIS 111
           PP+ S+S+  +      NCS    PST          SSSSSSS+S S+ ++S
Sbjct: 171 PPSVSNSSSSESVSSSSNCSNS--PST--------PSSSSSSSSSSSSSAIVS 43



 Score = 27.3 bits (59), Expect = 8.5
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = -1

Query: 50  FGGSGKENVPPNASSSTIHDDGYEIENCSLDFIPSTIDSVGTALTDSSSSSSSASVSAFV 109
           F  +G E  PP  +SS+         + S + + S+ +   +  T SSSSSSS+S S+  
Sbjct: 228 FSTNGDEVEPPTWASSSSPPPSVS-NSSSSESVSSSSNCSNSPSTPSSSSSSSSSSSSSA 52

Query: 110 ISS 112
           I S
Sbjct: 51  IVS 43


>TC14124 UP|Q8H945 (Q8H945) Phosphoenolpyruvate carboxylase  , complete
          Length = 3367

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 283  RNRNQNVKMQPHRPERKVDGTSKPAAN----KKITEYFPG 318
            R+ N NVK++PH  +  +D  SKPA         +EY PG
Sbjct: 2852 RDPNYNVKLRPHISKEAID-VSKPADELVTLNPTSEYAPG 2968


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,001,755
Number of Sequences: 28460
Number of extensions: 173976
Number of successful extensions: 1215
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of query: 700
length of database: 4,897,600
effective HSP length: 97
effective length of query: 603
effective length of database: 2,136,980
effective search space: 1288598940
effective search space used: 1288598940
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)