TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0132.6
         (162 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10339 homologue to UP|RL24_CICAR (O65743) 60S ribosomal protei...   294  4e-81
TC11570 similar to UP|O22165 (O22165) 60S ribosomal protein L30 ...    62  5e-11
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28...    30  0.16
TC8558 weakly similar to UP|Q9NDI0 (Q9NDI0) 200 kDa antigen p200...    30  0.26
AW720515                                                               29  0.35
TC14415 similar to UP|O04237 (O04237) Transcription factor, part...    29  0.35
TC13422                                                                27  1.3
AV408295                                                               27  1.7
BG662188                                                               27  1.7
TC12406 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, p...    26  2.9
TC9448 similar to GB|CAB81029.1|7269936|ATCHRIV72 cyclic nucleot...    25  5.0
BP053396                                                               25  6.5
BP038960                                                               25  8.5
BP034485                                                               25  8.5
TC16616 similar to GB|AAM47365.1|21360499|AY113057 AT4g32140/F10...    25  8.5

>TC10339 homologue to UP|RL24_CICAR (O65743) 60S ribosomal protein L24,
           complete
          Length = 677

 Score =  294 bits (753), Expect = 4e-81
 Identities = 147/164 (89%), Positives = 155/164 (93%), Gaps = 2/164 (1%)
 Frame = +2

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCK YFHNRLKPSKLTWTAM+RKQ
Sbjct: 74  MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQ 253

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVK 120
           HKKDIAQEA +K+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKER+K
Sbjct: 254 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 433

Query: 121 KTKDEKRAKKAEVQTKAQKSQGKG--GKVAAPKGPKLGGGGGKR 162
           KTKDEK+AKKAE   K+QKSQGKG   K AAPKGPKLGGGGGKR
Sbjct: 434 KTKDEKKAKKAETTAKSQKSQGKGNVSKGAAPKGPKLGGGGGKR 565


>TC11570 similar to UP|O22165 (O22165) 60S ribosomal protein L30
           (At2g44860/T13E15.13), partial (64%)
          Length = 1282

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
 Frame = +1

Query: 18  GRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDIA--QEAARKKRR 75
           G GI+F+R+D+++F F  SKC + F  +  P K+ WT  +R+ H K++   Q    +++R
Sbjct: 424 GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 603

Query: 76  STKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALRE--IKERVKKTKDEKRAKKAEV 133
           +  + Y R++    L+ I K           A+  A+RE    +++K+ K EK  ++AE 
Sbjct: 604 NRPERYDRNVKEDVLKAIPK----------IAKIRAIREETHHKKMKQGKHEKLRREAEK 753

Query: 134 QTK 136
           + K
Sbjct: 754 ELK 762


>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
           {Arabidopsis thaliana;}, partial (8%)
          Length = 937

 Score = 30.4 bits (67), Expect = 0.16
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
 Frame = -3

Query: 67  QEAARKKRRSTKKPYSR--------SIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 118
           +E  +K    +KK ++R        +I+    + I K   +  +  DA  +  +R ++  
Sbjct: 365 EEDGKKSGNDSKKQFTRLWSDEDEIAILKGLADFISKTGNDPLKYPDAFYDFVIRSLQAD 186

Query: 119 VKKT--KDEKRAKKAEVQTKAQKSQGKGGKVAAPKGPKL 155
             +T  KD+ R  K + QT A    GKG     PK PK+
Sbjct: 185 ATRTQVKDKVRRLKKKFQTLA----GKGKNGETPKFPKV 81


>TC8558 weakly similar to UP|Q9NDI0 (Q9NDI0) 200 kDa antigen p200
           (Fragment), partial (4%)
          Length = 585

 Score = 29.6 bits (65), Expect = 0.26
 Identities = 27/94 (28%), Positives = 42/94 (43%), Gaps = 19/94 (20%)
 Frame = +1

Query: 82  SRSIVGATLEVIQKRRTEK-PEVRDAAREAAL------------------REIKERVKKT 122
           S ++V A L+  ++R   +  E +DAA  AAL                  RE  E  +K 
Sbjct: 10  SPTLVAARLDAEERRNNIRLREEQDAAYRAALEADQARERQRREEQERLAREAAEAERKR 189

Query: 123 KDEKRAKKAEVQTKAQKSQGKGGKVAAPKGPKLG 156
           K+E+ A++ E +  A+K Q    K+   K   LG
Sbjct: 190 KEEEEAREREAREAAEK-QAALAKIRQQKAESLG 288


>AW720515 
          Length = 472

 Score = 29.3 bits (64), Expect = 0.35
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
 Frame = -2

Query: 44  NRLKPSKLTWTAMFRKQHKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQK--RRTEKP 101
           N LK   + W   F   H KDI +E    +RRS          G   +   K  R+  + 
Sbjct: 279 NFLK*FLVIWV*FF---HSKDIVKENLNHRRRS----------GLLTKACMKMNRKLREG 139

Query: 102 EVRDAAREAALREIKERVKKTKDEKRAKKAEVQTKAQKSQGKGGKV 147
            VR ++ +A    + E     K+ KR  K + + +  +S G GG V
Sbjct: 138 VVRSSSSKAFPLIVYEDPFGDKERKRVSKVQKKEEQWRSGGIGGTV 1


>TC14415 similar to UP|O04237 (O04237) Transcription factor, partial (83%)
          Length = 1666

 Score = 29.3 bits (64), Expect = 0.35
 Identities = 14/27 (51%), Positives = 18/27 (65%)
 Frame = +2

Query: 136 KAQKSQGKGGKVAAPKGPKLGGGGGKR 162
           KA + +G G    AP+GP  GGGGG+R
Sbjct: 587 KASERRGYG----APRGPYRGGGGGRR 655


>TC13422 
          Length = 490

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 32  LFVNSKCKRYFHNRLKPSKLTWTAMF 57
           LF+ S   +YFH+ L PSK+   A F
Sbjct: 226 LFLTSSQDKYFHSYLLPSKVNTCAFF 149


>AV408295 
          Length = 426

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 17/62 (27%), Positives = 28/62 (44%)
 Frame = +1

Query: 43  HNRLKPSKLTWTAMFRKQHKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPE 102
           H+ L+P +       +K+  K   +   RKKR   KK   +  +     +++KRR  K  
Sbjct: 133 HHPLRPRRTKLQLQLQKKK*KKKKRRKQRKKRNLLKKRRRKR*LKKKRNLLKKRRRPKLR 312

Query: 103 VR 104
           VR
Sbjct: 313 VR 318


>BG662188 
          Length = 358

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 13/29 (44%), Positives = 17/29 (57%)
 Frame = +1

Query: 123 KDEKRAKKAEVQTKAQKSQGKGGKVAAPK 151
           ++EKR  KAE + KA K   K  K A P+
Sbjct: 217 EEEKRCGKAEAERKAAKKGSKSKKGAPPE 303


>TC12406 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial (6%)
          Length = 450

 Score = 26.2 bits (56), Expect = 2.9
 Identities = 20/48 (41%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
 Frame = +2

Query: 116 KERVKKTKDEKRAKKAEVQTKAQK---SQGKGGKVAAPKGPKLGGGGG 160
           K R K+ K  K  KKAE + K +K   +Q +     A  GP  GGGGG
Sbjct: 194 KRRGKRRKKHK--KKAEKKRKIRKILMAQVQVQPQNAMPGPNGGGGGG 331


>TC9448 similar to GB|CAB81029.1|7269936|ATCHRIV72 cyclic nucleotide and
           calmodulin-regulated ion channel-like protein
           {Arabidopsis thaliana;} , partial (5%)
          Length = 553

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 141 QGKGGKVAAPKGPKLGGGGG 160
           +G+GGK     GPK GGGGG
Sbjct: 411 KGEGGKKL---GPKKGGGGG 461


>BP053396 
          Length = 467

 Score = 25.0 bits (53), Expect = 6.5
 Identities = 13/39 (33%), Positives = 16/39 (40%)
 Frame = +2

Query: 45  RLKPSKLTWTAMFRKQHKKDIAQEAARKKRRSTKKPYSR 83
           +L+   L W      QH   I     R KRR T  P S+
Sbjct: 197 KLRKRLLFW*PSMPSQHMDRIGTRIPRTKRRRTMSPLSK 313


>BP038960 
          Length = 524

 Score = 24.6 bits (52), Expect = 8.5
 Identities = 16/52 (30%), Positives = 25/52 (47%)
 Frame = +3

Query: 93  IQKRRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVQTKAQKSQGKG 144
           +QK   E+P V D+  EAA  +  E  ++ ++E+      V   A    GKG
Sbjct: 270 LQKGEAEQPRVEDSEEEAADYDDDEEEEEEEEEEDEHADRV---AVSGPGKG 416


>BP034485 
          Length = 485

 Score = 24.6 bits (52), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (49%)
 Frame = +3

Query: 134 QTKAQKSQGKGGKVAAPKGPKLGGGGGK 161
           + K +     GG     +G K GGGGGK
Sbjct: 180 KNKNKNKNNGGGNNKGKEGKKGGGGGGK 263


>TC16616 similar to GB|AAM47365.1|21360499|AY113057 AT4g32140/F10N7_50
           {Arabidopsis thaliana;}, partial (27%)
          Length = 883

 Score = 24.6 bits (52), Expect = 8.5
 Identities = 14/43 (32%), Positives = 22/43 (50%)
 Frame = -3

Query: 119 VKKTKDEKRAKKAEVQTKAQKSQGKGGKVAAPKGPKLGGGGGK 161
           V + +   RA+    Q + ++ +  GG   A  G + GGGGGK
Sbjct: 194 VNENRATNRARSDPKQERQRRGRDGGG--GAGGGGRDGGGGGK 72


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,167,329
Number of Sequences: 28460
Number of extensions: 24803
Number of successful extensions: 206
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of query: 162
length of database: 4,897,600
effective HSP length: 83
effective length of query: 79
effective length of database: 2,535,420
effective search space: 200298180
effective search space used: 200298180
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)