TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0132.5
         (458 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13521 similar to UP|NFS1_ARATH (O49543) Cysteine desulfurase, ...   217  4e-57
TC11278 similar to UP|NFS1_ARATH (O49543) Cysteine desulfurase, ...   179  1e-45
AV413701                                                               60  8e-10
AV425810                                                               40  8e-04
TC19502 homologue to PIR|T06435|T06435 ribonuclease S5 homolog -...    30  1.1
TC9277 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Ara...    29  1.9
CB826995                                                               27  5.4
AW719890                                                               27  5.4
AV766103                                                               27  7.0
TC16818 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, parti...    27  7.0
TC16926 weakly similar to UP|Q9LHH2 (Q9LHH2) Ankyrin-like protei...    27  7.0
TC14737 similar to UP|Q9LEB3 (Q9LEB3) RNA binding protein 47, pa...    27  7.0

>TC13521 similar to UP|NFS1_ARATH (O49543) Cysteine desulfurase,
           mitochondrial precursor  , partial (14%)
          Length = 394

 Score =  217 bits (552), Expect = 4e-57
 Identities = 106/107 (99%), Positives = 106/107 (99%)
 Frame = +1

Query: 1   MTSKLLASTLRHHLTKPTQLLRRHFLSTAAAAAAAAEPQQHHDESAGLTMKGVKIAGRPL 60
           MTSKLLASTLRHHLTKPTQLLRRHFLSTAAAAAAAAEPQQHHDESAGLTMKGVKIAGRPL
Sbjct: 73  MTSKLLASTLRHHLTKPTQLLRRHFLSTAAAAAAAAEPQQHHDESAGLTMKGVKIAGRPL 252

Query: 61  YLDVQATSPVDPRVLDAMLPFYISRYGNPHSRTHFYGWESDEAVENA 107
           YLDVQATSPVDPRVLDAMLPFYISRYGNPHSRTHFYGWESDEA ENA
Sbjct: 253 YLDVQATSPVDPRVLDAMLPFYISRYGNPHSRTHFYGWESDEAFENA 393


>TC11278 similar to UP|NFS1_ARATH (O49543) Cysteine desulfurase,
           mitochondrial precursor  , partial (20%)
          Length = 557

 Score =  179 bits (453), Expect = 1e-45
 Identities = 90/92 (97%), Positives = 91/92 (98%)
 Frame = +3

Query: 367 LLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTEAEIDRAIQL 426
           LLMGLKE+AVSSGSACTSASLEPSYVLRALGVEEDMAHTSI FGIGRFTTEAEIDRAIQL
Sbjct: 3   LLMGLKEIAVSSGSACTSASLEPSYVLRALGVEEDMAHTSISFGIGRFTTEAEIDRAIQL 182

Query: 427 TVHQVEKLREMSPLYEMVKEGINIKDIQWAQH 458
           TVHQVEKLREMSPLYEMVKEGINIKDIQWAQH
Sbjct: 183 TVHQVEKLREMSPLYEMVKEGINIKDIQWAQH 278


>AV413701 
          Length = 416

 Score = 60.1 bits (144), Expect = 8e-10
 Identities = 34/119 (28%), Positives = 59/119 (49%)
 Frame = +3

Query: 168 QQEGFDVTYLPVESDGLVDLEKLRAAIRPDTGLVSVMAVNNEIGVFQPMEEIGRICKEFN 227
           Q+ G  + ++ +  D + D+EKL+  +   T +V V  V+N +    P+ +I     +  
Sbjct: 21  QKVGAVLKFVDLNQDEIPDIEKLKEMLSKKTKIVVVHHVSNVLASVLPIRDIAHWAHDVG 200

Query: 228 VPFHTDAAQALGKVPVDVEKWNVSLMSLSGHKIYGPKGVGALYLRRRPRIRVEPQMNGG 286
                DA Q++  + VDV+  NV  +  S HK+ GP G+G LY +      + P + GG
Sbjct: 201 AKVLVDACQSVPHMVVDVQSLNVDFLVASSHKMCGPTGIGFLYGKIDILSSMPPFLGGG 377


>AV425810 
          Length = 433

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 33/109 (30%), Positives = 46/109 (41%), Gaps = 13/109 (11%)
 Frame = +3

Query: 177 LPVESDGLVDLEKLRAAIRPDTGLVSVMAVNNEIGVFQPMEEIGRICKEFNVPFHTDA-- 234
           +PV      D+   R  I  +T L+   A     G+  P+EE+G +   + V FH D   
Sbjct: 99  VPVNKSFQADVRATRRHINKNTILIVGSAPGYPHGIIDPIEELGHLASSYGVCFHVDLCL 278

Query: 235 -------AQALGK--VPVDVEKWNVSLMSLSGHKIYG--PKGVGALYLR 272
                  A+ LG    P D     VS +S+  HK YG  PKG   +  R
Sbjct: 279 GGFVLPFARELGYHIPPCDFSVQGVSSISVDVHK-YGLAPKGTSVVLYR 422


>TC19502 homologue to PIR|T06435|T06435 ribonuclease S5 homolog - garden pea
           {Pisum sativum;}, partial (5%)
          Length = 516

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 22/65 (33%), Positives = 33/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 283 MNGGGQERGIRSGTIPTPLVVGMGA-ACEVAMKEMEYDEKRISALQERLLNGIREKLDGV 341
           + GGG ER +  G     LV+G+GA  C++     E  + R   ++ R  + +R KL  V
Sbjct: 193 LRGGGAERAVFQGCGYRQLVLGVGAGTCDLPWLLDEPPQAR*QGIRCRFRH-VRSKLTRV 17

Query: 342 VVNGS 346
            V GS
Sbjct: 16  QVQGS 2


>TC9277 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
           thaliana;}, partial (79%)
          Length = 1297

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 83  ISRYGNPHSRTHFYGWESDEAVENARAQVASLI 115
           I RY  P S  HF+ W  +    + R Q+  L+
Sbjct: 30  IQRYNRPRSNLHFFNWNPNVVCGSCRYQIHLLL 128


>CB826995 
          Length = 479

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
 Frame = +2

Query: 181 SDGLVDLEKLRAAIR--------PDTGLVSVMAVNNEIG----VFQPMEEIGRICKEFNV 228
           +DG +D++ + AAIR        P T L+ +   +   G      +  + +G + K+  +
Sbjct: 143 NDGTMDIDLIEAAIRDPKGELFYPSTKLICLENTHANSGGRCLSAEYTDRVGEVAKKHGL 322

Query: 229 PFHTDAAQ------ALGKVPVD 244
             H D A+      ALG VPVD
Sbjct: 323 KLHIDGARIFNASVALG-VPVD 385


>AW719890 
          Length = 599

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 136 IKGVLHFYKEKKRHVITTQTEHKC 159
           IK  L FYKE+KR      T+ KC
Sbjct: 355 IKAALVFYKEEKRRPFLKNTDPKC 426


>AV766103 
          Length = 582

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 141 HFYKEKKRHVITTQTEHK 158
           +FYKE+K H I T+T+ K
Sbjct: 166 NFYKERKEHAIYTKTKRK 219


>TC16818 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, partial (23%)
          Length = 439

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = -2

Query: 211 GVFQPMEEIGRICKEFNVPFHTDAAQALGKVP 242
           G+F   +  G +  EFN PF ++   +LG VP
Sbjct: 267 GIFPKFKRKGLLELEFNDPFSSEEESSLGLVP 172


>TC16926 weakly similar to UP|Q9LHH2 (Q9LHH2) Ankyrin-like protein, partial
           (8%)
          Length = 801

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 27  STAAAAAAAAEPQQHHDESAGLTMKGVKIAGRPLY 61
           S+A+ AAAA  P +H   S+    +  ++ G PLY
Sbjct: 402 SSASGAAAAPAPGRHRCCSSSGARRSSRVPGSPLY 506


>TC14737 similar to UP|Q9LEB3 (Q9LEB3) RNA binding protein 47, partial (32%)
          Length = 803

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 12  HHLTKPTQLLRRHFLSTAAAAAAAAEPQQHHDE 44
           HH  +P      H    AAAAAA A PQQ H +
Sbjct: 303 HHHYQP-----HHQQQQAAAAAAGAVPQQQHQQ 386


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,937,967
Number of Sequences: 28460
Number of extensions: 87313
Number of successful extensions: 469
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of query: 458
length of database: 4,897,600
effective HSP length: 93
effective length of query: 365
effective length of database: 2,250,820
effective search space: 821549300
effective search space used: 821549300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)