TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0128.2
         (265 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15428                                                                35  0.013
TC15536 similar to UP|Q9FVN7 (Q9FVN7) NADPH-dependent mannose 6-...    32  0.085
TC9713                                                                 30  0.42
TC19223 similar to UP|Q940C3 (Q940C3) AT3g27530/MMJ24_7, partial...    30  0.42
TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific...    29  0.94
TC17811 similar to UP|Q9FKL6 (Q9FKL6) Calmodulin-binding protein...    28  1.2
TC9682 similar to UP|Q8VZC0 (Q8VZC0) DTDP-glucose 4-6-dehydratas...    28  2.1
AV778219                                                               28  2.1
BP063059                                                               27  3.6
BP055490                                                               27  3.6
TC14011                                                                27  4.7
TC9405 homologue to UP|Q84V96 (Q84V96) Aldehyde dehydrogenase 1 ...    27  4.7
AV771156                                                               27  4.7
TC11448                                                                27  4.7
AV409906                                                               27  4.7
AV423894                                                               26  6.1
BP062957                                                               26  6.1
BI419839                                                               26  6.1
AV418250                                                               26  6.1
BP028705                                                               26  7.9

>TC15428 
          Length = 629

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = +2

Query: 89  NSPSSSDPTQKRTVSITSH------LSTGNPSTSEDWRTSDKCIDDKCLFRSVW 136
           N+P+SS P+ K T + TSH      + T  PS +  +R+S K +   CL R +W
Sbjct: 2   NTPTSSYPSHKTTFTSTSHPLI*RLMKTPKPSVTSWFRSSVKRLVKACLSR*LW 163


>TC15536 similar to UP|Q9FVN7 (Q9FVN7) NADPH-dependent mannose 6-phosphate
           reductase, partial (40%)
          Length = 642

 Score = 32.3 bits (72), Expect = 0.085
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 98  QKRTVSITSHLSTGNPSTSEDWRTSDKCIDDKCL 131
           QK  VS+T+H   G  + + +W  S  C+DD+ L
Sbjct: 44  QKHGVSVTAHTPLGGAAANTEWFGSVSCLDDQVL 145


>TC9713 
          Length = 856

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 19/51 (37%), Positives = 25/51 (48%), Gaps = 3/51 (5%)
 Frame = -3

Query: 17  LHSYYFTHPRLVP---LFSLYFSCFSIHLLSMKLPKMSAK*QSYYSLSLNS 64
           L+S  F H    P   +F +Y  CF I  LS K    + K* SYY   L++
Sbjct: 695 LNSTIFKHNNFEPESQVFLIYIICFGIGTLSTKWNPHNLK*NSYYYYYLHA 543


>TC19223 similar to UP|Q940C3 (Q940C3) AT3g27530/MMJ24_7, partial (13%)
          Length = 525

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 79  ITVDSDSESHNSPSSSDPTQKRTVSITSHLSTGNPSTSEDWRTSDKCIDDKCLFRSVW 136
           + + ++ + H+S SSS  T       +S  ST +P+ S  W TS     +  L  S W
Sbjct: 224 LNIKTEIKVHHSSSSSSST-------SSAASTSSPTPSSSWSTSSPSSSNLALSLSTW 376


>TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific
           extensin-like protein precursor (PELP), partial (11%)
          Length = 630

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +1

Query: 80  TVDSDSESHNSPSSSDPTQKRTVSITSHLST----GNPSTSEDWRTSDKCIDDKCLFRSV 135
           T +    SH+  ++S+ T      ITS LST     N S SE+  +S  C +  C   S+
Sbjct: 388 TSEGTFSSHSEITTSEGTNSSHSEITSLLSTTSEGTNSSPSENTSSSSSCSEAPCCSNSI 567


>TC17811 similar to UP|Q9FKL6 (Q9FKL6) Calmodulin-binding protein, partial
           (10%)
          Length = 566

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/30 (36%), Positives = 18/30 (59%)
 Frame = -3

Query: 22  FTHPRLVPLFSLYFSCFSIHLLSMKLPKMS 51
           F H   +  +SL+F+   IH L  ++PK+S
Sbjct: 330 FPHTNFIGRWSLHFNSLPIHTLDYQIPKLS 241


>TC9682 similar to UP|Q8VZC0 (Q8VZC0) DTDP-glucose 4-6-dehydratase-like
           protein, partial (29%)
          Length = 731

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 65  DSDDGDKTTVSQEVITVDSDSESHNSP--SSSDPTQKRTVSITSHLSTGNPSTSEDWRTS 122
           D      TT S   ++  S SES ++P  SSS+P    +   T HL T  PS+    +TS
Sbjct: 289 DPSPDPSTTSSVNSVSSSSSSESSSAPPSSSSNPLSPASALTTPHL-TPTPSSPLPSQTS 465


>AV778219 
          Length = 569

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 80  TVDSDSESHNSPSSSDPTQKRTVSITSHLSTGNP 113
           T+D  S SH SPSS+  +   + S +   STG P
Sbjct: 568 TLDDSSVSHESPSSASLSAFASASTSRVFSTGAP 467


>BP063059 
          Length = 480

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = +1

Query: 30  LFSLYFSCFSIHLLSMKLPKMSA 52
           L S YFSC  +HL+ M L ++ A
Sbjct: 148 LMSTYFSCSCMHLIQMSLVQLHA 216


>BP055490 
          Length = 547

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 7   TFQCSDHHCSLHSYYFTHPRLVPLFSLYFSCFS 39
           +F CS  +CSL S +FT    +  F   F+ FS
Sbjct: 338 SFYCSSFYCSLSSKWFTSILTISNFFPSFTSFS 240


>TC14011 
          Length = 455

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = +2

Query: 172 CDDNEVVTLKPSGADGEPAWFYLH 195
           CDD+    ++PSGA+ E    +LH
Sbjct: 122 CDDDHTSEIEPSGAEHEAVPIWLH 193


>TC9405 homologue to UP|Q84V96 (Q84V96) Aldehyde dehydrogenase 1
          precursor  , partial (73%)
          Length = 1249

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 17/46 (36%), Positives = 25/46 (53%)
 Frame = +1

Query: 11 SDHHCSLHSYYFTHPRLVPLFSLYFSCFSIHLLSMKLPKMSAK*QS 56
          SDH CS HS+       +  F  ++SCFS  L   K+ ++  +*QS
Sbjct: 55 SDHGCS-HSFLSAFSLSLSFF-FFWSCFSASLTWRKIWRVEKQ*QS 186


>AV771156 
          Length = 484

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 11  SDHHCSLHSYYFTHPRLVPLFSLYFSCF 38
           + H C LHSYY T      +F++YF+ +
Sbjct: 108 NSHGCYLHSYY-TKQAWAEVFNIYFNIY 188


>TC11448 
          Length = 590

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 18/56 (32%), Positives = 28/56 (49%)
 Frame = +2

Query: 13  HHCSLHSYYFTHPRLVPLFSLYFSCFSIHLLSMKLPKMSAK*QSYYSLSLNSDSDD 68
           +HCS+H +       +P FSL FS  ++   S+     S    S + L L+S S+D
Sbjct: 287 YHCSMHYHCLFDLCCLPPFSL-FSLKALLFCSLAFEISSLDGNSLFFLLLDSGSED 451


>AV409906 
          Length = 412

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
 Frame = -3

Query: 64  SDSDDGDKTTVSQEVITVDSDSESHNSPSSSDPTQKRTVSITSHLSTGNPSTSEDWRTSD 123
           SD++DG     + +V +V     SH S SSS  +  ++ S ++  STG  ++  +   S 
Sbjct: 395 SDAEDGALAETALDVSSV-----SHKSTSSSSLSAFKSCSTSTVFSTGACASISELLASS 231

Query: 124 KCIDDKCLFRSVWNSVQSLKNNRLTARGFTRVNAETGHN--DDLSLNIAPCDDNEVVTLK 181
             I    L  S      +  ++ + A  FT    E G++  + +SL +       ++  +
Sbjct: 230 NLISGVSLITS-----DTASDSEVEADSFTTDVWEQGNDVIE*VSLTVVT*RSGSMIVSE 66

Query: 182 PSG 184
            SG
Sbjct: 65  RSG 57


>AV423894 
          Length = 408

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = -2

Query: 236 CFELLCEPLNFGPPYPLFLFFYKI 259
           CF LLC+  + G   P++L FY +
Sbjct: 248 CFHLLCDLNDCGRRCPIYLVFYHL 177


>BP062957 
          Length = 269

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 19/69 (27%), Positives = 27/69 (38%), Gaps = 6/69 (8%)
 Frame = -2

Query: 202 LFMKLPFSTFVCDVLTFLNVAPCQLLPNAWGFTRCFELLCEPLNFGP------PYPLFLF 255
           L+ K+P S    +         C L+   WG T CF         GP      P P+F  
Sbjct: 232 LYTKIPRSRP*IETYVTAFTRFCSLINPPWGGTPCF---ANVTFSGPVQLDLFPLPVFYL 62

Query: 256 FYKISIAKP 264
           F+K+ +  P
Sbjct: 61  FWKLLVFPP 35


>BI419839 
          Length = 496

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/27 (40%), Positives = 19/27 (69%)
 Frame = +1

Query: 90  SPSSSDPTQKRTVSITSHLSTGNPSTS 116
           +P SSDPT+    +++S + T +PS+S
Sbjct: 205 TPPSSDPTEPPQTTLSSVVPTRSPSSS 285


>AV418250 
          Length = 420

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 165 LSLNIAPCDDNEVVTLKPSGADGEPAWFYLHGYIFNELFMKLPFSTF 211
           L+L     D+NE   LKPS ++ E  W     ++ +   +  P +TF
Sbjct: 19  LNLEFPITDNNE*SNLKPSQSEEEEEWLSFLFFVPHRSQIPQPIATF 159


>BP028705 
          Length = 474

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 34 YFSCFSIHLLSMKL 47
          YFSC+ +HL+ MKL
Sbjct: 19 YFSCYFLHLVHMKL 60


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,026,269
Number of Sequences: 28460
Number of extensions: 98372
Number of successful extensions: 721
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of query: 265
length of database: 4,897,600
effective HSP length: 89
effective length of query: 176
effective length of database: 2,364,660
effective search space: 416180160
effective search space used: 416180160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)