TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0127b.1
         (509 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP040921                                                              261  1e-70
CN825552                                                              111  3e-25
TC15329 similar to UP|O22056 (O22056) Plastid RNA polymerase sig...    69  2e-12
TC12126 similar to PIR|S49166|S49166 cysteine proteinase  precur...    29  1.6
AV772215                                                               29  2.1
TC14509 similar to UP|FABG_CUPLA (P28643) 3-oxoacyl-[acyl-carrie...    28  3.5
TC9079 weakly similar to UP|Q8W4G1 (Q8W4G1) UDP-glucose glucosyl...    28  4.6
AW720175                                                               28  4.6
TC9133 similar to GB|AAP37758.1|30725472|BT008399 At5g27630 {Ara...    27  7.9

>BP040921 
          Length = 520

 Score =  261 bits (668), Expect = 1e-70
 Identities = 128/128 (100%), Positives = 128/128 (100%)
 Frame = +3

Query: 382 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 441
           KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK
Sbjct: 3   KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182

Query: 442 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 501
           LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE
Sbjct: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362

Query: 502 MEAMLLKH 509
           MEAMLLKH
Sbjct: 363 MEAMLLKH 386


>CN825552 
          Length = 731

 Score =  111 bits (277), Expect = 3e-25
 Identities = 68/235 (28%), Positives = 125/235 (52%), Gaps = 1/235 (0%)
 Frame = +3

Query: 223 LSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIA 282
           L L+E K+ L+ + G EP+  + A    +    L+ K      +RE+L  +N+R+V+ +A
Sbjct: 45  LKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVA 224

Query: 283 QRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR 342
           + Y   G  + DL+Q G +GLL+ ++KF    G +  +Y YWWI+Q + +A+  +SRT+R
Sbjct: 225 KTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIR 404

Query: 343 LPTHLHERL-SLIRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREA 401
           LP  ++ +L  ++   K  ++E  + PT + +A+ + +S+ K+ +         S+ +  
Sbjct: 405 LPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTV 584

Query: 402 FPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIR 456
           +   N     T     AD  +E+ P   V +  ++  V  L++ TL  +ER IIR
Sbjct: 585 WTDQN----TTFQEITADTSIES-PDSSVSKELMRRHVLNLLS-TLRPKERRIIR 731


>TC15329 similar to UP|O22056 (O22056) Plastid RNA polymerase sigma-subunit
           (RNA polymerase sigma factor), partial (30%)
          Length = 604

 Score = 68.9 bits (167), Expect = 2e-12
 Identities = 50/177 (28%), Positives = 96/177 (53%), Gaps = 2/177 (1%)
 Frame = +2

Query: 333 ALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIAKSLNMSQKKVRNATEAI 391
           +L + SRT+RLP H+ E    ++ A+ +L  E G  P  + +A++  +S K++       
Sbjct: 2   SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 181

Query: 392 SKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVERE 451
               SL+++   + N  P +     IAD   E      + ++  KD + K+++ +L  RE
Sbjct: 182 KAPRSLEQKIGINQNLKPSEV----IADPEAETAEEQLIKQFMKKD-LEKVLD-SLNPRE 343

Query: 452 REIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLL 507
           +++IR  +G+D   + T ++I + +G+SRER+RQ+   A  KLK+  R + ++  L+
Sbjct: 344 KQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKNKKRNKHLQQYLV 514


>TC12126 similar to PIR|S49166|S49166 cysteine proteinase  precursor -
           spring vetch {Vicia sativa;}  , partial (71%)
          Length = 839

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 413 HHCYIADNRLENIPWHGVDEWTL 435
           H C++ D   +N+PW+   EW L
Sbjct: 306 HLCFLKD*SSQNVPWNSTREWKL 374


>AV772215 
          Length = 416

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -2

Query: 461 LDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 494
           +D     +E+I K + LSRERVR +  +AL KL+
Sbjct: 319 MDTPLPPFEEIGKLLKLSRERVRPIHGLALSKLQ 218


>TC14509 similar to UP|FABG_CUPLA (P28643) 3-oxoacyl-[acyl-carrier protein]
           reductase, chloroplast precursor  (3-ketoacyl-acyl
           carrier protein reductase) , partial (47%)
          Length = 764

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +3

Query: 263 CTLARERLAMSN----VRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKI 318
           CT A  ++ M N    +  + S+     N+G       + G+IGL + + K  SS+G  +
Sbjct: 66  CTQAAAKIMMKNRKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYSSRGITV 245

Query: 319 STYVYWWIRQGVSRAL 334
           +     +I   ++  L
Sbjct: 246 NAVAPGFIASDMTAKL 293


>TC9079 weakly similar to UP|Q8W4G1 (Q8W4G1) UDP-glucose glucosyltransferase,
            partial (65%)
          Length = 1585

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = +1

Query: 122  QWSLSCEREVLTEHPRQEKSSKKVAVTCSGVSARQRRINTKRKIPGKTGSAMQACDAMQM 181
            +W +  E +   +    E    ++ V   G   RQR +  K+K    T      C  M +
Sbjct: 1228 EWDIGIEVDTNVKREEVENLIHELMVGDKGKKMRQRTMELKKKAEEDTRPG--GCSYMNL 1401

Query: 182  RSLISPELLQNR 193
              LI   LL+N+
Sbjct: 1402 DKLIKEVLLKNK 1437


>AW720175 
          Length = 451

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 27/101 (26%), Positives = 46/101 (44%)
 Frame = +3

Query: 161 TKRKIPGKTGSAMQACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIK 220
           T  KI   T +A+    A++ +  +S E+ +N+       +VSE ++       LSE   
Sbjct: 39  TGLKIMANTAAALILNPAVEHQITVSAEVKENQGGD---AIVSEMVIECESNWILSESQI 209

Query: 221 VGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTI 261
             +  DE    +  +   + S   +AASLK   SE+ + TI
Sbjct: 210 QPMKEDELMLSVDFQCPHDSSFQSVAASLKTVYSEIDSPTI 332


>TC9133 similar to GB|AAP37758.1|30725472|BT008399 At5g27630 {Arabidopsis
           thaliana;}, partial (16%)
          Length = 677

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +1

Query: 97  LEVESSDLGYSVEALLLLQK--SMLEKQWSLSCEREVLTEHPRQ 138
           LEVE ++LG  ++ +  LQK   +L++Q + S E+  L+  PRQ
Sbjct: 145 LEVEVAELGQKLQTIGTLQKELELLQRQKAAS-EQAALSAKPRQ 273


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,723,682
Number of Sequences: 28460
Number of extensions: 93353
Number of successful extensions: 443
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of query: 509
length of database: 4,897,600
effective HSP length: 94
effective length of query: 415
effective length of database: 2,222,360
effective search space: 922279400
effective search space used: 922279400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)