BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0127a.6
(105 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP067247 28 0.31
TC16104 homologue to GB|AAP37819.1|30725594|BT008460 At5g03290 {... 27 0.53
CB827808 27 0.53
AV779986 26 1.2
TC17679 25 1.6
TC10984 25 1.6
BP042696 25 2.6
BP055405 24 3.5
TC9040 similar to UP|RL71_ARATH (P60040) 60S ribosomal protein L... 24 3.5
TC18710 23 5.9
TC15501 23 5.9
TC17699 23 5.9
BP071516 23 7.7
>BP067247
Length = 515
Score = 27.7 bits (60), Expect = 0.31
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -3
Query: 20 LKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHR---VPYIAIGGN**FIV 76
+++ L V +++N N G V+S + +I G++ + YI IGG
Sbjct: 483 IENDLEVNDEITMVIENDYNTYEFGGKKSLVLSTTTWIGGRNHFLGIAYIFIGGMSLLFA 304
Query: 77 IVCMIM 82
I C++M
Sbjct: 303 IACLLM 286
>TC16104 homologue to GB|AAP37819.1|30725594|BT008460 At5g03290
{Arabidopsis thaliana;}, partial (41%)
Length = 559
Score = 26.9 bits (58), Expect = 0.53
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 9 RCFPWLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPL 47
RC PWL +S D +VA ++L L S LP+ PL
Sbjct: 27 RCQPWLLIS---SDEPSVAATSLTLSGVSPPLPLRSAPL 134
>CB827808
Length = 251
Score = 26.9 bits (58), Expect = 0.53
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +1
Query: 8 FRCFPWLAVSFFLKDGLNVAPSTLQLLQNS 37
+ CFP L + ++ G +AP ++ LLQ S
Sbjct: 148 YSCFPQLLLPYYWGGGGVIAPPSISLLQRS 237
>AV779986
Length = 551
Score = 25.8 bits (55), Expect = 1.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 13 WLAVSFFLKDGLNVAPSTLQLLQN 36
W+++ FF+++G TL+ LQN
Sbjct: 209 WMSMQFFMREGDRELTQTLESLQN 138
>TC17679
Length = 585
Score = 25.4 bits (54), Expect = 1.6
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 24 LNVAPSTLQLLQNSANLPMV 43
L+++ +TLQLL+ S NLP++
Sbjct: 20 LSLSSTTLQLLKKSHNLPLI 79
>TC10984
Length = 649
Score = 25.4 bits (54), Expect = 1.6
Identities = 11/37 (29%), Positives = 19/37 (50%)
Frame = -1
Query: 2 GYWVQGFRCFPWLAVSFFLKDGLNVAPSTLQLLQNSA 38
G + GF+ + W + + K PSTL ++ NS+
Sbjct: 262 GIRICGFKEWWWGVIDIWFKSASKSRPSTLTIISNSS 152
>BP042696
Length = 460
Score = 24.6 bits (52), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = -1
Query: 28 PSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQ-HRVPYIAI 68
P +LQLL NLP++ P+ YI Q H+ P + +
Sbjct: 430 PPSLQLLSQLRNLPLMNGPIVENS*RQHYIQNQNHKSPSLTM 305
>BP055405
Length = 512
Score = 24.3 bits (51), Expect = 3.5
Identities = 12/29 (41%), Positives = 14/29 (47%)
Frame = -3
Query: 9 RCFPWLAVSFFLKDGLNVAPSTLQLLQNS 37
R PWL F +KD L+ LLQ S
Sbjct: 243 RAVPWLEGGFVMKDELSSVFDVFSLLQVS 157
>TC9040 similar to UP|RL71_ARATH (P60040) 60S ribosomal protein L7-1,
complete
Length = 941
Score = 24.3 bits (51), Expect = 3.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 12 PWLAVSFFLKDGLNVAPSTLQLLQNSANLPM 42
PW V K + PS+ L+ +A+LPM
Sbjct: 217 PWHTVGLCSKSACEIQPSSSWRLRVAASLPM 125
>TC18710
Length = 843
Score = 23.5 bits (49), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Frame = +3
Query: 3 YWVQGF----RCFPWLAVSFFLKDG 23
+W QG R W +SFFLK+G
Sbjct: 672 FWSQGSLIITRSMVWWDLSFFLKEG 746
>TC15501
Length = 1128
Score = 23.5 bits (49), Expect = 5.9
Identities = 11/34 (32%), Positives = 16/34 (46%)
Frame = +1
Query: 1 LGYWVQGFRCFPWLAVSFFLKDGLNVAPSTLQLL 34
LGY PWL + ++ D NV S + +L
Sbjct: 676 LGYLSSSPSLQPWLLIDQYIHDSRNVVISKIYVL 777
>TC17699
Length = 486
Score = 23.5 bits (49), Expect = 5.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 5 VQGFRCFPWLAVSFFLKD 22
VQ +RCF WL F D
Sbjct: 380 VQHYRCFAWLKFIIFSTD 433
>BP071516
Length = 183
Score = 23.1 bits (48), Expect = 7.7
Identities = 8/31 (25%), Positives = 16/31 (50%)
Frame = -1
Query: 40 LPMVGTPLYAVVSDSVYISGQHRVPYIAIGG 70
LP++G ++S + ++ G H + GG
Sbjct: 102 LPLLGVLFLQILSKNSFVIGHHTSAHCTFGG 10
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.355 0.161 0.564
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,811,559
Number of Sequences: 28460
Number of extensions: 19712
Number of successful extensions: 282
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of query: 105
length of database: 4,897,600
effective HSP length: 81
effective length of query: 24
effective length of database: 2,592,340
effective search space: 62216160
effective search space used: 62216160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 47 (22.7 bits)
Lotus: description of TM0127a.6