TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0126.8
         (749 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU252157                                                              204  3e-53
BI417718                                                               32  0.37
TC8983 UP|Q40213 (Q40213) RAB7C, complete                              31  0.83
TC12700 similar to UP|P93390 (P93390) Phosphate/phosphoenolpyruv...    29  2.4
AV410512                                                               28  7.0
TC12399                                                                28  7.0
BP065590                                                               27  9.1
AV408212                                                               27  9.1

>AU252157 
          Length = 350

 Score =  204 bits (520), Expect = 3e-53
 Identities = 105/116 (90%), Positives = 106/116 (90%), Gaps = 8/116 (6%)
 Frame = +1

Query: 407 VAITNLHSCNGPEFQFQLRLSFF--------SGSREIQVANARLRVVYFPFTKGKENIER 458
           VAITNLHSCNGPEFQFQLRLSF         + SREIQVANARLRVVYFPFTKGKENIER
Sbjct: 1   VAITNLHSCNGPEFQFQLRLSFSPDSDGIKTASSREIQVANARLRVVYFPFTKGKENIER 180

Query: 459 ILEKLADDGCVIRENFLNFSRVSVRRLGRLLPDARWTLLPFMDIRNKKGNRANILK 514
           ILEKLADDGCVIRENFLNFSRVSVRRLGRLLPDARWTLLPFMDIRNKKGNRANILK
Sbjct: 181 ILEKLADDGCVIRENFLNFSRVSVRRLGRLLPDARWTLLPFMDIRNKKGNRANILK 348


>BI417718 
          Length = 515

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 271 LFIAPSHVLSHNRRASVSSKTKHVKKVYMLHLEREALLNTCSEVKWKTDGGIRDPSKDEI 330
           LF      +  +RRA  SSK K V       ++R++ ++ C E      G   D +K +I
Sbjct: 218 LFALTMAAIGISRRAPNSSKAKIVTASIFEIIDRKSKIDPCDE-----SGSTLDSTKGKI 382

Query: 331 KDCHGSF 337
           + CH SF
Sbjct: 383 EFCHVSF 403


>TC8983 UP|Q40213 (Q40213) RAB7C, complete
          Length = 1017

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/36 (41%), Positives = 25/36 (68%)
 Frame = -1

Query: 549 LKNIGNKISDNQKGILINSYYTVTTLLSRFLDTQLT 584
           L+ IGN+I  N  G++ +SY+T+T  L+R ++T  T
Sbjct: 954 LRKIGNEI--NNFGMVSHSYFTITEHLTRLMNTNQT 853


>TC12700 similar to UP|P93390 (P93390) Phosphate/phosphoenolpyruvate
           translocator, partial (9%)
          Length = 442

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
 Frame = -3

Query: 654 RVHKVLKRKEKLWKHGERIKVQKGA------CAGCHKNTVFATIEYFLLEGFEGDAGGDS 707
           R H  L+R+  +WK G R +   G       C G  +   + T   F   G EG+  G+ 
Sbjct: 233 RRHLDLRRRR*VWKRGGRRRKVAGGGWCGGGCGGGGRGRRWRTPPRFAFSGSEGE*NGEE 54

Query: 708 RI-ICR 712
           R  +CR
Sbjct: 53  RARLCR 36


>AV410512 
          Length = 429

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 280 SHNRRASVSSKTKHVKKVYMLHLEREALLNTC 311
           +H R  +++ + K   K+ +LHLE +  L+TC
Sbjct: 180 AHKRNRAINVRNKLPSKLTILHLEGDVELSTC 85


>TC12399 
          Length = 356

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 624 DEEADSGEDQA---VIIVNPANKKELRISSDVIRVHK 657
           D+ +D+ E Q    +II+N  N  ++ ISS + ++HK
Sbjct: 296 DQRSDAWESQVNPTIIIINIYNNLKISISSTIHKIHK 186


>BP065590 
          Length = 483

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 517 SLRVKCFIETDAGFKPTQTKTDLAHH 542
           SLR  C  E+ AG  P+ + + +AHH
Sbjct: 302 SLRGLCMFESSAGATPSHSPSAIAHH 379


>AV408212 
          Length = 362

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 348 KDFDINRLQCHLKDIYFPYIQFLIVVFI 375
           + F +  L  HL+D+ +PY   +IV  +
Sbjct: 234 QSFQLTHLHYHLRDVLYPYFAVVIVAVV 151


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,249,424
Number of Sequences: 28460
Number of extensions: 185711
Number of successful extensions: 791
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of query: 749
length of database: 4,897,600
effective HSP length: 97
effective length of query: 652
effective length of database: 2,136,980
effective search space: 1393310960
effective search space used: 1393310960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)