TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0126.7
         (542 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV777619                                                               29  1.7
AV768479                                                               29  2.2
TC16339 similar to UP|Q8VYI1 (Q8VYI1) At1g69640/F24J1.22, partia...    27  8.4

>AV777619 
          Length = 433

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 25  RVIVLVDCGVSHNFI 39
           RVIVL+DCG +HN I
Sbjct: 389 RVIVLIDCGATHNLI 433


>AV768479 
          Length = 462

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 213 IPNIRPYRCPHYQKSEIEKLVKEMLDVGIFRPSISQFSSLVILVKKK 259
           IP  RP+RC  Y K  +   +   +  G  +PS   F  ++  + ++
Sbjct: 156 IPTTRPHRCQWYPKHILHHTIMPRVPHGFIQPSDKPFFVIIFTIMQQ 296


>TC16339 similar to UP|Q8VYI1 (Q8VYI1) At1g69640/F24J1.22, partial (37%)
          Length = 544

 Score = 26.9 bits (58), Expect = 8.4
 Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
 Frame = +1

Query: 174 VPEQLQGLMGDYSELFSTIWD-LPPSRVQDHAIHLQEG 210
           +  QLQGL  +YS+ F  IWD L  + +  H +   EG
Sbjct: 148 IHHQLQGLKYNYSQPFFPIWDKLLGTHMPFHLVKRPEG 261


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.349    0.158    0.543 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,791,023
Number of Sequences: 28460
Number of extensions: 134789
Number of successful extensions: 934
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of query: 542
length of database: 4,897,600
effective HSP length: 95
effective length of query: 447
effective length of database: 2,193,900
effective search space: 980673300
effective search space used: 980673300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 57 (26.6 bits)